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This is an automated workflow pipeline for analyzing and processing Bulk-RNA seq data, implemented primarily in bash, python and R, and wrapped in a NextFlow workflow to characterize the gene landscape in the samples.

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MIT license
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unikill066/Bulk-RNA-Seq-Nextflow-Pipeline

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This is an automated workflow pipeline for analyzing and processing Bulk-RNA seq data, implemented primarily in bash, python and R, and wrapped in a NextFlow workflow to characterize the gene landscape in the samples.

Topics

rna-seq multiqc bedtools samtools featurecounts bamtools fastqc rna-seq-pipeline htseq-count stringtie bulk-rna-seq nextflow-pipeline

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  • Nextflow 53.5%
  • Shell 31.2%
  • Python 13.7%
  • R 1.6%