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ralfne/pathosDBGenbankImport
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|---|---|---|---|---|
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ftp://ftp.ncbi.nih.gov/genbank/gbrel.txt:
152. gbbct99.seq - Bacterial sequence entries, part 99.
153. gbchg.txt - Accession numbers of entries updated since the previous release.
154. gbcon1.seq - Constructed sequence entries, part 1.
440. gbdel.txt - Accession numbers of entries deleted since the previous release.
441. gbenv1.seq - Environmental sampling sequence entries, part 1.
517. gbest1.seq - EST (expressed sequence tag) sequence entries, part 1.
994. gbgss1.seq - GSS (genome survey sequence) sequence entries, part 1.
1281. gbhtc1.seq - HTC (high throughput cDNA sequencing) sequence entries, part 1.
1437. gbinv1.seq - Invertebrate sequence entries, part 1.
1561. gbmam1.seq - Other mammalian sequence entries, part 1.
1570. gbnew.txt - Accession numbers of entries new since the previous release.
1571. gbpat1.seq - Patent sequence entries, part 1.
1786. gbphg2.seq - Phage sequence entries, part 2.
1787. gbpln1.seq - Plant sequence entries (including fungi and algae), part 1.
1876. gbpri1.seq - Primate sequence entries, part 1.
1924. gbrel.txt - Release notes (this document).
1925. gbrod1.seq - Rodent sequence entries, part 1.
1956. gbsts1.seq - STS (sequence tagged site) sequence entries, part 1.
1976. gbsyn1.seq - Synthetic and chimeric sequence entries, part 1.
1984. gbtsa1.seq - TSA (transcriptome shotgun assembly) sequence entries, part 1.
2140. gbuna1.seq - Unannotated sequence entries, part 1.
2141. gbvrl1.seq - Viral sequence entries, part 1.
2173. gbvrt1.seq - Other vertebrate sequence entries, part 1.
The detailed format for the LOCUS line format is as follows:
Positions Contents
--------- --------
01-05 'LOCUS'
06-12 spaces
13-28 Locus name
29-29 space
30-40 Length of sequence, right-justified
41-41 space
42-43 bp
44-44 space
45-47 spaces, ss- (single-stranded), ds- (double-stranded), or
ms- (mixed-stranded)
48-53 NA, DNA, RNA, tRNA (transfer RNA), rRNA (ribosomal RNA),
mRNA (messenger RNA), uRNA (small nuclear RNA).
Left justified.
54-55 space
56-63 'linear' followed by two spaces, or 'circular'
64-64 space
65-67 The division code
68-68 space
69-79 Date, in the form dd-MMM-yyyy (e.g., 15-MAR-1991)
Legal values for the division code include:
PRI - primate sequences
ROD - rodent sequences
MAM - other mammalian sequences
VRT - other vertebrate sequences
INV - invertebrate sequences
PLN - plant, fungal, and algal sequences
BCT - bacterial sequences
VRL - viral sequences
PHG - bacteriophage sequences
SYN - synthetic sequences
UNA - unannotated sequences
EST - EST sequences (Expressed Sequence Tags)
PAT - patent sequences
STS - STS sequences (Sequence Tagged Sites)
GSS - GSS sequences (Genome Survey Sequences)
HTG - HTGS sequences (High Throughput Genomic sequences)
HTC - HTC sequences (High Throughput cDNA sequences)
ENV - Environmental sampling sequences
CON - Constructed sequences
TSA - Transcriptome Shotgun Assembly sequences
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