Repositories list

• pycellin

  Public
  Graph-based framework to manipulate and analyze cell lineages from cell tracking data

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•20•9•5•Updated Jan 5, 2026Jan 5, 2026

• napari-epyseg

  Public
  Plugin to run epyseg within napari

  segmentationepithelianapari-plugin

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated Dec 4, 2025Dec 4, 2025

• localZBackProjector

  Public
  Retrieves the height map from 2D denoised projected epithelia image

  tissueprojectionheightmap+ 2bioimage-analysisepithelia

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Dec 4, 2025Dec 4, 2025

• .github

  Public
  0•0•0•0•Updated Dec 3, 2025Dec 3, 2025

• Pasteur-BioImage-Analysis-Course-2025

  Public
  Teaching materials and outline for the Pasteur Bioimage Analysis vour

  segmentationteaching-materialsbioimage-analysis+ 1spatial-transcriptomics

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•14•0•0•Updated Jun 2, 2025Jun 2, 2025

• LocalZProjector

  Public
  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated Sep 25, 2023Sep 25, 2023