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Merged
matthdsm merged 52 commits into from
Feb 13, 2026
Merged

Feat: per sample params #155

matthdsm merged 52 commits into from
Feb 13, 2026
+3,378 −2,223

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@matthdsm matthdsm commented Feb 9, 2026

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@matthdsm matthdsm requested a review from nvnieuwk February 9, 2026 14:22
nvnieuwk
nvnieuwk reviewed Feb 9, 2026
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nvnieuwk
nvnieuwk reviewed Feb 9, 2026
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nvnieuwk
nvnieuwk reviewed Feb 9, 2026
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matthdsm added 25 commits February 9, 2026 15:51
@matthdsm matthdsm requested a review from nvnieuwk February 11, 2026 21:44
nvnieuwk
nvnieuwk approved these changes Feb 12, 2026
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I trust you

@matthdsm matthdsm merged commit 32ec4af into dev Feb 13, 2026
32 of 34 checks passed
@matthdsm matthdsm deleted the feat/per-sample-params branch February 13, 2026 06:33
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