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Feature anj #3

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@anjag01 anjag01 commented May 13, 2025

Description

Checklist

  • Make sure that you are listed in the AUTHORS file
  • Add relevant changes and new features to the CHANGELOG file
  • I have commented my code, particularly in hard-to-understand areas
  • New and existing unit tests pass locally with my changes
  • Updated or added python bindings for changed or new classes (Tick if no updates were necessary.)

How can I get additional information on failed tests during CI

Click to expand If your PR is failing you can check out
  • The details of the action statuses at the end of the PR or the "Checks" tab.
  • http://cdash.seqan.de/index.php?project=OpenMS and look for your PR. Use the "Show filters" capability on the top right to search for your PR number.
    If you click in the column that lists the failed tests you will get detailed error messages.

Advanced commands (admins / reviewer only)

Click to expand
  • /reformat (experimental) applies the clang-format style changes as additional commit. Note: your branch must have a different name (e.g., yourrepo:feature/XYZ) than the receiving branch (e.g., OpenMS:develop). Otherwise, reformat fails to push.
  • setting the label "NoJenkins" will skip tests for this PR on jenkins (saves resources e.g., on edits that do not affect tests)
  • commenting with rebuild jenkins will retrigger Jenkins-based CI builds

⚠️ Note: Once you opened a PR try to minimize the number of pushes to it as every push will trigger CI (automated builds and test) and is rather heavy on our infrastructure (e.g., if several pushes per day are performed).

cbielow and others added 30 commits October 30, 2023 14:19
@cbielow
fix error in concatenation
3a3c006
@cbielow
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into develop
432955c
@cbielow
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into develop
0968e8e
@cbielow
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into develop
bc0eb68
@subCode321
changed minimum header size
5264837
@moabo3li
[MSNumpressCoder]Refactoring: move implementation from header to cpp (O…
0b7f28f 
…penMS#7934)

* [MSNumpressCoder]Refactoring: move implementation from header to cpp

Fixes OpenMS#7904

* Update AUTHORS
@poshul
Fix broken filterable list boxes (OpenMS#7942)
69793b9 
Don't use wildcardToRegularExpression.
@BhuvanB404
Added support for more Data-field (OpenMS#7914)
85be5fe 
* Added support for more Data-field

* added extra datafilds as requested

* added mslevel to object instead of metadata

* Update MascotGenericFile.h

* Update MascotGenericFile.h

---------

Co-authored-by: BhuvanB <bhuvanb1408@gmail.com>
@poshul
Fix deb dependencies (OpenMS#7943)
411f4f2 
qt6-base-dev not required for OpenMS usage
@cbielow
make GaussFitter a lot faster
dd9fa42
@cbielow
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into feat_…
a845b65 
…ppfast
@subCode321
Fixed logic of parse
f1fdcdd
@subCode321
Merge branch 'develop' into fixcrash
33450e0
@cbielow
Speed improvement to GaussTraceFitter (OpenMS#7950)
c6a0998 
* fix error in concatenation

* make GaussFitter a lot faster

* mod CHANGELOG
@singjc
DOC: Minor update to OSW TOPP doc (OpenMS#7956)
86507b6 
* update: OSW doc usage of use_ms1_traces to enable_ms1

* update: example spyo chrom mzML param use_ms1_traces to enable_ms1
@subCode321
drop changes to check for valid headers
27b1bfc
@subCode321
Merge branch 'fixcrash' of github.com-subcode:subCode321/OpenMS into …
b2b99bb 
…fixcrash
@cbielow
Merge branch 'develop' into fixcrash
6b76c5d
@cbielow
fixes OpenMS#7923 (Targetedfileconverter crash)
6daf848 
BugFix : Fixed Targetedfileconverter crash
@timosachsenberg
improve compatibility with mzTabM standard (OpenMS#7958)
94a9194 
* minor fixes for MzTab

* choose more sane defaults

* fix test
@ChandraDevs1
FastaFile cannot start with an empty line (OpenMS#7960)
b36cdec 
* Enhanced test coverage in

* added changelog for new updates

* fixes the issue for OpenMS#7839
@subCode321
changed implementation
94e59bd
@subCode321
Revert "changed implementation"
9be6e33 
This reverts commit 94e59bd.
@subCode321
add const and const iterator
0aaee0e
@timosachsenberg @coderabbitai
Update PercolatorInfile.cpp to handle a corner case in sage (OpenMS#7977
f29d4fe 
)

* Update PercolatorInfile.cpp

* Apply suggestions from code review

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>

---------

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>
@subCode321
add logic to find minima
3043106
@subCode321
add min finder utility
4ebfa4c
@subCode321
Merge branch 'develop' into alignwork
f2ff27e
@subCode321
use getScoreComparator static const function
6230eb3
@subCode321
Merge branch 'alignwork' of github.com-subcode:subCode321/OpenMS into…
bdd798d 
… alignwork
Anjali Gajurel added 23 commits May 4, 2025 18:36
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