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@loosolab

Looso bioinformatics lab

Group of bioinformatics at the Max Planck Institute for Heart and Lung Research

Popular repositories Loading

  1. TOBIAS TOBIAS Public

    Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

    Python 237 45

  2. scanpro scanpro Public

    A modular tool for proportion analysis in single-cell sequencing data

    Jupyter Notebook 24 2

  3. UROPA UROPA Public

    Universal RObust Peak Annotator

    Python 16 6

  4. TF-COMB TF-COMB Public

    Transcription Factor Co-Occurrence using Market Basket analysis

    Python 15 2

  5. cardiac-progenitors cardiac-progenitors Public

    Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement

    R 10 3

  6. i2dash i2dash Public

    i2dash: interactive and iterative dashboards.

    R 10 4

Repositories

Showing 10 of 33 repositories
  • SC-Framework Public

    A framework for single cell analysis

    loosolab/SC-Framework’s past year of commit activity
    HTML 8 MIT 3 0 0 Updated Feb 4, 2026
  • FRED Public
    loosolab/FRED’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 4, 2026
  • loosolab/FRED_whitelists’s past year of commit activity
    Python 0 0 0 0 Updated Feb 3, 2026
  • loosolab/FRED_standalone’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 29, 2026
  • MarkerRepo Public
    loosolab/MarkerRepo’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 28, 2026
  • TOBIAS_snakemake Public

    Snakemake pipeline for running TOBIAS analysis

    loosolab/TOBIAS_snakemake’s past year of commit activity
    Python 8 MIT 5 2 0 Updated Dec 16, 2025
  • loosolab/Code_Tarasco_et_al_2025_danioheart’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 12, 2025
  • PILOT_scframework Public Forked from CostaLab/PILOT

    Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)

    loosolab/PILOT_scframework’s past year of commit activity
    Python 1 MIT 6 0 0 Updated Dec 5, 2025
  • Code_Schultheis_et_al_2025_SC-Framework Public

    Contains the analysis results of the SC-Framework manuscript

    loosolab/Code_Schultheis_et_al_2025_SC-Framework’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 4, 2025
  • TOBIAS Public

    Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

    loosolab/TOBIAS’s past year of commit activity
    Python 237 MIT 45 3 0 Updated Dec 2, 2025

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