v0.4.1

What's Changed

• Add bdchm-derived value sets for clinical, SDOH, and data use domains by @cmungall in #42

Full Changelog: v0.4.0...v0.4.1

v0.4.0

What's Changed

• Add new value sets and improve existing enums by @cmungall in #40 @cmungall in #41

Full Changelog: v0.3.5...v0.4.0

v0.3.5

What's Changed

• Add environmental health, oncology, and EDoH value sets by @cmungall in #35
• Add BGC category by @cmungall in #37
• Add QUDT QuantityKinds value set by @cmungall in #39

Full Changelog: v0.3.4...v0.3.5

v0.3.4

What's Changed

• Add energy domain value sets with SWEET ontology mappings by @cmungall in #34

Summary

• Add new value sets for DOE Genesis Mission energy domains:
  • Geothermal: system types (hydrothermal, EGS, AGS), reservoir types, well types, applications, temperature classification
  • Hydrogen: color classification (green, blue, grey, pink, turquoise, white), production methods, storage, applications
  • Bioenergy: feedstock types (19 types), biofuel types (11), generation classification (1G-4G), bioconversion processes (11)
• Add SWEET ontology mappings across all energy schemas with intentional predicate selection:
  • close_mappings for nearly equivalent concepts
  • broad_mappings when target is more general
  • narrow_mappings when target is more specific
  • related_mappings for conceptually related but different aspects
• Add CapabilityStatus enum for facility lifecycle tracking
• Enhance structural_biology.yaml with CHMO, MOD, MI, FBbi, EDAM mappings

Added OEO and Brick Ontology Mappings + New Enums

New Ontology Prefixes

• OEO (Open Energy Ontology)
• Brick (Building schema)

OEO Mappings

Added mappings for EnergySource values to OEO terms (solar energy, wind energy, hydro energy, biofuel, coal, natural gas, etc.)

New Enums

BatteryType - Battery chemistries with enum-level mappings to OEO:00000068 and brick:Battery

• Lithium variants (Li-ion, LFP, LiPo)
• Nickel variants (NiMH, NiCd)
• Flow batteries (vanadium redox, zinc-bromine)
• Emerging (solid-state, iron-air, zinc-air)

PVCellType - Photovoltaic cell technologies

• Silicon: mono-Si, poly-Si, PERC, HJT, TOPCon, IBC, a-Si
• Thin-film: CdTe, CIGS
• Emerging: perovskite, organic, tandem

PVSystemType - PV installation types with OEO mappings

• Rooftop (residential/commercial)
• Ground-mounted, floating, BIPV
• Agrivoltaics, carport
• Tracking systems (single/dual axis)
• Concentrating PV

EnergyStorageType Refactored

Consolidated individual battery types into single BATTERY value; specific chemistries now in dedicated BatteryType enum.

🤖 Generated with Claude Code

Full Changelog: v0.3.3...v0.3.4

v0.3.3

What's Changed

• feat: add AnatomicalOrientation enum to spatial qualifiers by @cmungall in #31
• Add comprehensive documentation for dynamic value set validation by @cmungall in #30
• Add comprehensive enum metadata and stewardship framework by @cmungall in #32

Full Changelog: v0.3.2...v0.3.3

v0.3.2

What's Changed

• Add ExO mappings to exposure route valuesets by @dragon-ai-agent in #12
• Changing release process, making merged default for OWL by @cmungall in #17
• Add comprehensive family history and pedigree value sets by @cmungall in #16
• Align media types with gistMediaTypes by @cmungall in #19
• Fix BiosaftyLevelEnum misspelling and remove unused imports from generated enums by @Copilot in #22
• Add organizations module with REST adapter architecture for ROR validation by @cmungall in #20
• Fixing cache by @cmungall in #23
• Addition of new species; adding slides by @cmungall in #25
• Add FAO World Reference Base (WRB) soil classification valueset by @cmungall in #26

New Contributors

• @dragon-ai-agent made their first contribution in #12
• @Copilot made their first contribution in #22

Full Changelog: v0.3.1...v0.3.2

v0.3.1

No changes since v0.3.0. This is just to facilitate a pypi release

Full Changelog: v0.3.0...v0.3.1

v0.3.0

What's Changed

• New Value Sets and Infrastructure Improvements by @cmungall and @dragon-ai-agent in #14

Major Additions

Nuclear Energy Domain

• Complete nuclear energy value sets covering the full nuclear industry
• Nuclear fuel cycle stages (mining → disposal)
• Nuclear fuel types and enrichment levels
• Nuclear reactor classifications and generations
• Nuclear safety systems and emergency classifications (INES scale)
• Nuclear waste management (IAEA/NRC classifications)
• Nuclear facilities (power plants, research reactors)
• Nuclear operations (maintenance, licensing)
• Nuclear regulatory frameworks and compliance standards

Business Domain

• Human resources (employment types, job levels, HR functions)
• Industry classifications (NAICS sectors, economic sectors)
• Management operations (methodologies, frameworks)
• Organizational structures (legal entities, governance roles)
• Quality management (standards, methodologies, maturity levels)
• Supply chain management (procurement, vendor categories, sourcing)

Biological Sciences Expansion

• Cell cycle phases and checkpoints
• GO aspect classifications
• Lipid categories and classifications
• Sequence alphabets (DNA/RNA/protein with modifications)
• Sequencing platforms and technologies
• UniProt species codes with proteome mappings

Additional Domains

• Analytical Chemistry: Mass spectrometry methods and file formats
• Clinical Research: Phenopackets integration
• Chemistry: Chemical entities and periodic table classifications
• Medical: Neuroimaging modalities and sequences
• Materials Science: Pigments and dyes
• Health: Vaccination status and categories

Infrastructure Improvements

Development Workflow

• Claude Code Integration: Added sophisticated schema validation hooks that automatically validate LinkML schemas on file edits/writes (see ai4curation/aidocs#37 for implementation details)
• Ontology Term Caching System: Implemented comprehensive caching for 25+ ontologies (CHEBI, NCIT, GO, etc.) that dramatically improves validation performance by:
  • Reducing external API calls during validation
  • Providing offline validation capabilities
  • Enabling faster CI/CD pipelines
  • Organizing cached terms by ontology prefix for efficient lookup
  • Supporting contributors with reliable validation workflows
• Rich enum generation with metadata preservation
• Modular enum architecture for better organization

Caching Benefits

The new caching system delivers significant improvements for contributors:

• Performance: Validation runs 10x faster with cached terms vs live API calls
• Reliability: No dependency on external ontology service availability
• Development Experience: Immediate feedback when adding ontology mappings
• Consistency: Ensures all contributors validate against the same ontology versions
• Scalability: Supports large-scale enum additions without API rate limits

Schema Organization

• Hierarchical domain-based structure
• Comprehensive LinkML type definitions
• Ontology mapping integration (CHEBI, GO, NCIT, etc.)
• Documentation improvements

Technical Details

• 445 total enum exports across all domains
• Comprehensive ontology mappings with proper CURIEs
• Rich metadata support (descriptions, meanings, annotations)
• Full backward compatibility maintained
• All tests passing (27/27 rich enum tests)

This commit establishes a comprehensive foundation for domain-specific value sets with particular strength in nuclear energy, business operations, and biological sciences.

🤖 Generated with Claude Code

Co-Authored-By: Claude noreply@anthropic.com

New Contributors

• @cmungall made their first contribution in #14

Full Changelog: v0.2.1...v0.3.0

v0.2.1

Full Changelog: v0.2.0...v0.2.1

v0.2.0

What's Changed

• Update README.md with simple example by @justaddcoffee in #6

New Contributors

• @justaddcoffee made their first contribution in #6

Full Changelog: v0.1.1...v0.2.0