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@insitro

insitro

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  1. redun redun Public

    Yet another redundant workflow engine

    Python 572 54

  2. insitro-research insitro-research Public

    insitro's repository for public research code and data

    Jupyter Notebook 24 11

  3. AllelicSeries AllelicSeries Public

    Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutations have increasingly large phenotypic effects.

    R 14 2

  4. ChannelViT ChannelViT Public

    Channel Vision Transformers: An Image Is Worth C x 16 x 16 Words

    Python 71 8

  5. EmbedGEM EmbedGEM Public

    EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery

    Python 22 1

  6. kindel kindel Public

    KinDEL is a large DNA-encoded library dataset containing two kinase targets (DDR1 and MAPK14) for benchmarking machine learning models.

    Python 28 11

Repositories

Showing 10 of 17 repositories
  • redun Public

    Yet another redundant workflow engine

    insitro/redun’s past year of commit activity
    Python 572 Apache-2.0 54 28 5 Updated Dec 10, 2025
  • insitro-research Public

    insitro's repository for public research code and data

    insitro/insitro-research’s past year of commit activity
    Jupyter Notebook 24 11 0 0 Updated Dec 1, 2025
  • ChannelSFormer Public

    Code Repository for ChannelSFormer: A Channel Agnostic Vision Transformer for Multi-Channel Cell Painting Images

    insitro/ChannelSFormer’s past year of commit activity
    Python 1 0 0 0 Updated Dec 1, 2025
  • cp-posh Public

    A Pooled Cell Painting CRISPR Screening Platform Enables de novo Inference of Gene Function by Self-supervised Deep Learning

    insitro/cp-posh’s past year of commit activity
    Jupyter Notebook 3 1 0 0 Updated Oct 29, 2025
  • AllelicSeries Public

    Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutations have increasingly large phenotypic effects.

    insitro/AllelicSeries’s past year of commit activity
    R 14 2 0 0 Updated Oct 22, 2025
  • MoleculeMiner Public
    insitro/MoleculeMiner’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Sep 23, 2025
  • kindel Public

    KinDEL is a large DNA-encoded library dataset containing two kinase targets (DDR1 and MAPK14) for benchmarking machine learning models.

    insitro/kindel’s past year of commit activity
    Python 28 11 1 0 Updated Sep 2, 2025
  • contrastive_vi_plus Public

    Modeling variable guide efficiency in pooled CRISPR screens with ContrastiveVI+

    insitro/contrastive_vi_plus’s past year of commit activity
    Python 8 1 0 0 Updated May 5, 2025
  • causal_considerations_ml_assisted_gwas Public

    simulation code for the paper 'Causal considerations can deterimine the utility of machine learning assisted GWAS'

    insitro/causal_considerations_ml_assisted_gwas’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Apr 3, 2025
  • FastVim Public

    Fast Vision Mamba : Pool your Spatial Dimensions for Accelerated Processing

    insitro/FastVim’s past year of commit activity
    Python 15 1 1 6 Updated Jan 28, 2025