GitHub - huyu335/cwl-commandlinetools: Central location for CWL CommandLineTools

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Central location for CWL CommandLineTools

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Name		Name	Last commit message	Last commit date
Latest commit History 74 Commits
Workflows		Workflows
abra2_2.17		abra2_2.17
abra2_2.19		abra2_2.19
alfred_0.1.17		alfred_0.1.17
bedtools_genomecov_v2.28.0_cv2		bedtools_genomecov_v2.28.0_cv2
bedtools_merge_v2.28.0_cv2		bedtools_merge_v2.28.0_cv2
bwa_mem_0.7.12		bwa_mem_0.7.12
bwa_mem_0.7.5a		bwa_mem_0.7.5a
disambiguate_1.0.0		disambiguate_1.0.0
facets_1.5.6		facets_1.5.6
gatk_ApplyBQSR_4.1.2.0		gatk_ApplyBQSR_4.1.2.0
gatk_BaseRecalibrator_4.1.2.0		gatk_BaseRecalibrator_4.1.2.0
gatk_apply_bqsr_4.1.0.0		gatk_apply_bqsr_4.1.0.0
gatk_base_recalibrator_4.1.0.0		gatk_base_recalibrator_4.1.0.0
gatk_mark_duplicates_4.1.0.0		gatk_mark_duplicates_4.1.0.0
marianas_collapsing_first_pass_1.8.1		marianas_collapsing_first_pass_1.8.1
marianas_collapsing_second_pass_1.8.1		marianas_collapsing_second_pass_1.8.1
marianas_process_loop_umi_1.8.1		marianas_process_loop_umi_1.8.1
msisensor_0.2		msisensor_0.2
msisensor_0.6		msisensor_0.6
mutect2_4.1.0.0		mutect2_4.1.0.0
picard_add_or_replace_read_groups_1.96		picard_add_or_replace_read_groups_1.96
picard_fix_mate_information_1.96		picard_fix_mate_information_1.96
picard_mark_duplicates_1.96		picard_mark_duplicates_1.96
picard_mark_duplicates_2.8.1		picard_mark_duplicates_2.8.1
samtools-merge_1.9		samtools-merge_1.9
samtools_sort_1.3.1		samtools_sort_1.3.1
samtools_view_1.3.1		samtools_view_1.3.1
scatterintervals_4.1.0.0		scatterintervals_4.1.0.0
snp-pileup_0.1.1		snp-pileup_0.1.1
test-yamls		test-yamls
trim_galore_0.6.2		trim_galore_0.6.2
utilities_ubuntu_18.04		utilities_ubuntu_18.04
waltz_count_reads_3.1.1		waltz_count_reads_3.1.1
waltz_pileupmatrices_3.1.1		waltz_pileupmatrices_3.1.1
.gitignore		.gitignore