TarGeneSimulationStudy

Repository containing run configurations and analysis scripts for the evaluation of semi-parametric estimators in the UK-Biobank.

Reproducibility

Workflows were run on the Eddie High Performance Computing platform.

Workflows

To run the workflows, the following dependencies need to be available:

• DVC >= 3.51.0
• Nextflow >= 24.04.4
• Singularity >= 3.8.6

Then run:

dvc repro

Analyses

To run the analyses scripts, the following dependency needs to be installed:

• Julia >= 1.10.0

Then run:

julia --project -e'using Pkg; Pkg.instantiate()'

to install the project's dependencies and

julia --project analyses.jl'

to generate the plots.