shiny for python

This Shiny application allows users to upload a .zip file containing single-cell RNA-seq data in .h5ad format and visualize the data using UMAP (Uniform Manifold Approximation and Projection). The app processes the data, performs dimensionality reduction, and generates a UMAP plot to help users explore cell clusters and their relationships.

Features

• Upload ZIP File: Users can upload a .zip file containing .h5ad data.
• UMAP Visualization: The app automatically processes the data and generates a UMAP plot.
• Interactive Interface: The Shiny interface makes it easy to upload data and view results.

Benefits

• User-Friendly: No coding required; simply upload your data and view the results.
• Quick Insights: Quickly visualize cell clusters and identify patterns in single-cell RNA-seq data.
• Customizable: The UMAP plot can be customized to highlight different cell features.

How to Use

1. Clone this repository.
2. Install the required Python packages:

   pip install shiny scanpy matplotlib and then
   run the app with "shiny run" command :)