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Evaluate need for VCFtools

Status: Open.

#24 In danforthcenter/panvaR;

· cluebbert opened on Dec 3, 2025

Split main panvar_func() into 2 functions

Status: Open.

#23 In danforthcenter/panvaR;

· cluebbert opened on Nov 20, 2025

Add flag for number of results from run of multiple snps

Status: Open.

#22 In danforthcenter/panvaR;

· cluebbert opened on Nov 20, 2025

SNP and chromosome name consistency

Status: Open.

#21 In danforthcenter/panvaR;

· cluebbert opened on Nov 20, 2025

Tag snp reporting

enhancementNew feature or requestNew feature or request

Status: Open.

#20 In danforthcenter/panvaR;

· cluebbert opened on Nov 20, 2025

left join error in setaria when passing precomputed gwas pvalues

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#19 In danforthcenter/panvaR;

· prashantbhandari87 opened on Nov 20, 2025

Add functional examples

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

Task

#18 In danforthcenter/panvaR;

· cluebbert opened on Nov 18, 2025

Make input syntax consistent

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#16 In danforthcenter/panvaR;

· cluebbert opened on Nov 18, 2025

Add ability to include variant effect scores

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#15 In danforthcenter/panvaR;

· cluebbert opened on Nov 13, 2025

Make pointer to snpsift

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#14 In danforthcenter/panvaR;

· cluebbert opened on Nov 13, 2025

Make pointer to bcftools

Status: Open.

Task

#13 In danforthcenter/panvaR;

· cluebbert opened on Nov 13, 2025

Snpsift status

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#12 In danforthcenter/panvaR;

· cluebbert opened on Nov 13, 2025