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collaborativebioinformatics

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  1. STRdust STRdust Public

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  2. Mosaicome Mosaicome Public

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  3. Sniphles Sniphles Public

    Sniphles is a read-based phasing approach for phased variant calling of structural variants.

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  5. nibSV nibSV Public

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  6. GeneVar2 GeneVar2 Public

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Repositories

Showing 10 of 118 repositories
  • Haploblock_Clusters_ElixirBH25 Public Forked from jedrzejkubica/Elixir-BH-2025

    Elixir BioHackathon 2025 Project 4: Beyond beacons: Establishing genomic background in European and international biobanks

    collaborativebioinformatics/Haploblock_Clusters_ElixirBH25’s past year of commit activity
    Python 6 MIT 2 0 0 Updated Dec 16, 2025
  • HaploblocksBH25_manuscript Public
    collaborativebioinformatics/HaploblocksBH25_manuscript’s past year of commit activity
    TeX 0 0 0 0 Updated Dec 15, 2025
  • MethSmoothEval Public
    collaborativebioinformatics/MethSmoothEval’s past year of commit activity
    Jupyter Notebook 6 MIT 0 0 0 Updated Dec 3, 2025
  • IsoSV Public
    collaborativebioinformatics/IsoSV’s past year of commit activity
    Python 4 3 0 0 Updated Dec 2, 2025
  • ODP_hackathon_supplemental_materials Public

    Supplemental Materials from the AWS ODP - NVIDIA Knowledge Graph Hackathon

    collaborativebioinformatics/ODP_hackathon_supplemental_materials’s past year of commit activity
    0 MIT 0 0 0 Updated Dec 1, 2025
  • GeNETwork Public

    Build a knowledge graph connecting variants, drugs, and clinical evidence to identify therapeutic opportunities (e.g. CIViC - Clinical Interpretations of Variants in Cancer)

    collaborativebioinformatics/GeNETwork’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Nov 4, 2025
  • BioGraphRAG Public

    Implement a system to use GNN and/or LLM to use knowledge graphs to integrate literature with knowledge graphs made from large public datasets (CIVIC, TCGA, CPTAC)

    collaborativebioinformatics/BioGraphRAG’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Oct 10, 2025
  • ClassiGraph Public

    Develop a graph neural network to integrate proteomic and genomic features for cancer subtype classification (e.g. CPTAC-2 and CPTAC-3 breast, colorectal, and ovarian cancer data)

    collaborativebioinformatics/ClassiGraph’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 9, 2025
  • EasyGiraffe Public

    Simulating and validating multi-centric variant extraction with VG Giraffe.

    collaborativebioinformatics/EasyGiraffe’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 6, 2025
  • CNVision Public
    collaborativebioinformatics/CNVision’s past year of commit activity
    Python 8 MIT 2 0 0 Updated Oct 5, 2025
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