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How to create a Repeat element STAR index for a RepBase fasta file?

Status: Open.

#44 In YeoLab/eCLIP;

· Jamie-King opened on Feb 12, 2025

Why only read2 is used for peak calling?

Status: Open.

#43 In YeoLab/eCLIP;

· FionaMoon opened on Dec 7, 2023

why CLIPPER only generates rep1 and rep2?

Status: Open.

#42 In YeoLab/eCLIP;

· FionaMoon opened on Dec 4, 2023

What should I do after peak calling?

Status: Open.

#40 In YeoLab/eCLIP;

· FionaMoon opened on Jul 18, 2023

Standard paired-end barcodes

Status: Open.

#39 In YeoLab/eCLIP;

· MusculusMus opened on Jul 18, 2023

Help with demo prerequisite files

Status: Open.

#37 In YeoLab/eCLIP;

· valerieT1998 opened on Apr 17, 2023

barcodecollapsepe.py

Status: Open.

#35 In YeoLab/eCLIP;

· juuinn opened on Jan 6, 2023

Which barcode-specific bam are used?

Status: Open.

#33 In YeoLab/eCLIP;

· biofilos opened on Sep 20, 2022

STAR 2.7.4a and 2.7.6a not compatible with the Genome 20201

Status: Open.

#32 In YeoLab/eCLIP;

· Zanex233 opened on Sep 14, 2022

Fisher exact test should be one sided

Status: Open.

#31 In YeoLab/eCLIP;

· algaebrown opened on Aug 4, 2022

On AWS instance, cwltool install leads to "error in rdflib-jsonld setup command: use_2to3 is invalid."

Status: Open.

#30 In YeoLab/eCLIP;

· lynnhlee opened on Aug 4, 2022

umi_tools import fails on single end cwl

Status: Open.

#29 In YeoLab/eCLIP;

· bounlu opened on Dec 9, 2021