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Update build the docs to match v1.2.0 #100

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Merged
ramosv merged 1 commit into from
Nov 30, 2025
Merged

Update build the docs to match v1.2.0 #100

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4 changes: 4 additions & 0 deletions .gitignore
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Expand Up @@ -75,6 +75,9 @@ TCGA_BRCA_DATA/
!bioneuralnet/datasets/lgg/
!bioneuralnet/datasets/lgg/**/*.csv

!bioneuralnet/datasets/paad/
!bioneuralnet/datasets/paad/**/*.csv


feature_testing

Expand All @@ -89,6 +92,7 @@ env.bak/
venv.bak/
.venv/
bioneuralnet-env/
.localenv/

# IDE and editor directories
.vscode/
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3 changes: 2 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -197,6 +197,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/).

### Left to Do
- **(DONE)Test Suite Completion**: Refactor remaining tests (`gnn_embedding`, `subject_representation`, `hybrid_louvain`) to align with new `utils` imports and other major changes.
- **Documentation**: Update ReadTheDocs API reference and `README.md` to reflect the split `utils` submodules and new `graph_tools`. All jupyter notebook examples will need to be updates.
- **(DONE)Documentation**: Update ReadTheDocs API reference and `README.md` to reflect the split `utils` submodules and new `graph_tools`. All jupyter notebook examples will need to be updates.
- **(DONE)Release Prep**: Bump version to `1.2.0` in `setup.py`.
- **(DONE)Errors**: Errors with tests and doc-build are expected. They will be addresed in following smaller versions `1.2.1` and so on.

1,101 changes: 1,101 additions & 0 deletions TCGA-Notebooks/TCGA-BRCA.ipynb
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3,443 changes: 3,443 additions & 0 deletions TCGA-Notebooks/TCGA-Biomarkers.ipynb
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