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Pull Request Overview
This PR introduces a new function to parse phosphorylation sites in protein sequences and adds scoring functionality to evaluate potential phosphosites, along with minor documentation and version updates.
- Added a new utility function (parse_phosphosites) to identify and score phosphorylation sites.
- Introduced a new module for scoring protein sequences.
- Updated default rounding precision in phosphoproteomics and bumped the package version.
Reviewed Changes
Copilot reviewed 5 out of 5 changed files in this pull request and generated no comments.
Show a summary per file
| File | Description |
|---|---|
| src/kinase_library/utils/utils.py | Added parse_phosphosites function to identify phosphosites. |
| src/kinase_library/objects/phosphoproteomics.py | Updated documentation (rounding precision) for prediction. |
| src/kinase_library/modules/scoring.py | Added new module to score protein sequences. |
| src/kinase_library/modules/enrichment.py | Adjusted comment formatting for clarity. |
| src/kinase_library/init.py | Imported scoring module and bumped the package version. |
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Function to score all the possible sites in a given protein (closes #43)