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‘lmer’ method in Zlm function obviates first factor level

Status: Open.

#195 In RGLab/MAST;

· juanmoriano opened on Jul 24, 2025

Does the output coef mean lnFC or log2FC?

Status: Open.

#193 In RGLab/MAST;

· Mark-wt opened on Jul 7, 2025

When I try to install "MAST", the error occurred as follows and installation halted.

Status: Open.

#192 In RGLab/MAST;

· rheupion opened on May 6, 2025

Residual hook causes NAs

Status: Open.

#191 In RGLab/MAST;

· JThomasWatson opened on Oct 14, 2024

DEG counts are associated with the number of cells

Status: Open.

#188 In RGLab/MAST;

· ZunpengLiu opened on May 8, 2024

Error: grouping factors must have > 1 sampled level

Status: Open.

#187 In RGLab/MAST;

· andrewsong777 opened on Mar 4, 2024

Error in getClassDef(x@superClass, package = packageSlot(x))@virtual : no applicable method for <code>@</code> applied to an object of class "NULL"

Status: Open.

#184 In RGLab/MAST;

· nfancy opened on Jan 17, 2024

Error in validObject(.Object): invalid class “corMatrix” object: 'sd' slot has nonfinite elements

Status: Open.

#180 In RGLab/MAST;

· derrik-gratz opened on Sep 18, 2023

lrTest's with CoefficientHypothesis and contrast matrix give inconsistent results

Status: Open.

#178 In RGLab/MAST;

· ImNotaGit opened on Mar 21, 2023

p values not reported for all features

Status: Open.

#177 In RGLab/MAST;

· susheelbhanu opened on Jan 25, 2023

Low logFCs and failure to converge?

Status: Open.

#173 In RGLab/MAST;

· learning-MD opened on Mar 29, 2022

Support for passing hypothesis to doLRT in summary() as in lrTest()

Status: Open.

#171 In RGLab/MAST;

· ImNotaGit opened on Dec 23, 2021