Feature/save file #4
Open
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…unction moved upper
TRextabat
requested review from
TRextabat and
Copilot
and removed request for
Copilot
src/modules/preprocessing.py
Outdated
Comment on lines
12
to
13
| raise ValueError(f"{var} is not found in adata.var_names") | ||
|
|
There was a problem hiding this comment.
The error message in the following line incorrectly references 'adata.var_names' instead of 'adata.obs.columns'. Consider updating the error message to accurately reflect the column lookup.
Suggested change
| raise ValueError(f"{var} is not found in adata.var_names") | |
| raise ValueError(f"{var} is not found in adata.obs.columns") |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Pull Request: Add AnnData Save Function
Adds a utility function to save an
AnnDataobject usingadata.write().This is the recommended method for exporting data in
.h5adformat.