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@EngreitzLab

Engreitz Lab

Engreitz Lab @ Stanford University

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  1. ABC-GWAS-Paper ABC-GWAS-Paper Public

    Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021

    PostScript 16 2

  2. CRISPRDesigner CRISPRDesigner Public

    Design and selection of gRNAs for pooled CRISPRi tiling screens

    Python 2 1

Repositories

Showing 10 of 32 repositories
  • ENCODE-rE2G-Paper Public

    Analysis code for the ENCODE-rE2G paper

    EngreitzLab/ENCODE-rE2G-Paper’s past year of commit activity
    R 1 MIT 1 0 0 Updated Jan 22, 2026
  • CRISPR_comparison Public

    Snakemake workflow for comparing E-G links to experimental data

    EngreitzLab/CRISPR_comparison’s past year of commit activity
    HTML 23 MIT 4 1 2 Updated Jan 22, 2026
  • eQTLEnrichment Public
    EngreitzLab/eQTLEnrichment’s past year of commit activity
    R 3 MIT 3 0 0 Updated Jan 21, 2026
  • GWAS_E2G_benchmarking Public

    Benchmark enhancer-gene predictions against fine-mapped GWAS variants

    EngreitzLab/GWAS_E2G_benchmarking’s past year of commit activity
    R 3 MIT 2 2 0 Updated Jan 21, 2026
  • cNMF_benchmarking Public
    EngreitzLab/cNMF_benchmarking’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 21, 2026
  • nmf-torch Public Forked from lilab-bcb/nmf-torch

    sparse_nmf_torch

    EngreitzLab/nmf-torch’s past year of commit activity
    Python 0 BSD-3-Clause 6 0 0 Updated Dec 12, 2025
  • DC_TAP_Paper Public

    Workflow for analyzing DC TAP datasets

    EngreitzLab/DC_TAP_Paper’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Dec 9, 2025
  • ENCODE_rE2G Public

    Enhancer-Gene Prediction Pipeline based on logistic regression and ABC model

    EngreitzLab/ENCODE_rE2G’s past year of commit activity
    Python 13 MIT 3 2 1 Updated Nov 25, 2025
  • cNMF_pipeline Public
    EngreitzLab/cNMF_pipeline’s past year of commit activity
    Jupyter Notebook 8 1 1 1 Updated Nov 24, 2025
  • element-gene-power-analysis Public

    “Power and sample-size analysis for detecting element–gene links (SCEPTRE-based); estimates per-pair power and expected discoveries at a target FDR.”

    EngreitzLab/element-gene-power-analysis’s past year of commit activity
    R 0 MIT 0 0 0 Updated Nov 13, 2025
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