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- ActinRingsMC.jl Public
A Julia simulation package with functions for running adaptive umbrella sampling Monte Carlo simulations of crosslinked actin rings.
Biochemical-Networks/ActinRingsMC.jl’s past year of commit activity - Chemotactic-Receptor-Array-MWC-Ising Public
Jupyter notebooks for modelling E. coli's chemotactic receptors, including variations of both the MWC and the Ising model. Important: the final simulations are in the notebook chemotaxis.ipynb
Biochemical-Networks/Chemotactic-Receptor-Array-MWC-Ising’s past year of commit activity - Tradeoffs-cellular-prediction Public
Reproduce the figures of 'Trade-offs between cost and information in cellular prediction'
Biochemical-Networks/Tradeoffs-cellular-prediction’s past year of commit activity - Synchronous-Replication-Initiation Public
This code simulates the bacterial cell cycle and is used to study the degree of synchrony of replication initiation in the bacterium E. coli.
Biochemical-Networks/Synchronous-Replication-Initiation’s past year of commit activity - DNA_replication_muriel Public
Biochemical-Networks/DNA_replication_muriel’s past year of commit activity - actinfrictionpy Public
Biochemical-Networks/actinfrictionpy’s past year of commit activity - actinrings Public
Python package that implements the analytical model from "Constriction of actin rings by passive crosslinker".
Biochemical-Networks/actinrings’s past year of commit activity - PathWeightSampling-Langevin Public
Path Weight Sampling implementation for Langevin systems in presence of feedback
Biochemical-Networks/PathWeightSampling-Langevin’s past year of commit activity - filament-sliding Public
A program to simulate the sliding of crosslinked filaments, based on the code of Harmen Wierenga.
Biochemical-Networks/filament-sliding’s past year of commit activity - PathWeightSampling.jl Public Forked from manuel-rhdt/PathWeightSampling.jl
Julia implementation of Path Weight Sampling (PWS) to compute information transmission rates
Biochemical-Networks/PathWeightSampling.jl’s past year of commit activity
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