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@AdaptiveMotorControlLab

Mathis Lab @ EPFL

Mechanisms underlying adaptive behavior in intelligent systems | led by Mackenzie Mathis (@MMathisLab)

Welcome to the M-Lab of Adaptive Intelligence 👋

Group 23

We are a team of neuroscientists, computer scientists, and enigneers that come together to tackle one of the largest challanges in science - how does the brain drive adaptive behavior. Namely, our world is always changing: how do our brains adapt? We develop new machine learning methods that enable us to understand the mechanisms underlying adaptive behavior in intelligence systems, aka “adaptive intelligence”.

  • From 2017-2023 we were also called the Adaptive Motor Control Lab (hence the org name!) but decided to rename ourselves to the M-Lab of Adaptive Intelligence (M for Mackenzie 💙) to better reflect our ML, CV, and systems neuro sides of the lab 🖤. We still really like sensorimotor control though!

Check out our website for more information, and see our open source code below!

Of particular interest:

  • DeepLabCut: for animal pose estimation.
  • DLC2Kinematics for processing DeepLabCut data for kinematic analysis.
  • CEBRA: for supervised and unsupervised dimensionality reduction (behavioral data, neural, or both!).
  • AmadeusGPT: for using large language models as systems for behavioral analysis.
  • CellSeg3D: for 3D mesoSPIM segmentation of cell soma.

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  1. CEBRA CEBRA Public

    Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

    Python 1.1k 91

  2. DLC2Kinematics DLC2Kinematics Public

    a module for kinematic analysis of deeplabcut outputs

    Jupyter Notebook 149 27

  3. CellSeg3D CellSeg3D Public

    A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks

    Jupyter Notebook 112 20

  4. JoystickControlSystem JoystickControlSystem Public

    joystick system used in Mathis et al, 2017

    Python 7 2

  5. AmadeusGPT AmadeusGPT Public

    We turn natural language descriptions of behaviors into machine-executable code

    Jupyter Notebook 232 13

  6. CEBRA-demos CEBRA-demos Public

    CEBRA Demo Notebooks. Please see all of them at the URL below:

    Jupyter Notebook 15 6

Repositories

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