Square Lattice tile Assembly Model (SLAM)

Note this module is dependent on

matplotlib

c++11 (and a suitably recent compiler)

Install

This should work

cd /path/to/download
tar xvzf SLAM-(VERSION)tar.gz (or otherwise extract it)
cd /SLAM-(VERSION)
python setup.py install --user 

ignore the compiler warnings

additionally this seems to work (and is more safe(?))

cd /path/to/download (containing only the compressed download)
pip install . --user

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Usage

Should (in theory) be able to use like

TestScript.py

#!/usr/bin/env python
import polyominomodel
polyominomodel.GrowPoly([1,1,1,1,2,0,0,0])

Functions

GenerateGenotype
GenerateBDGenotype
GraphAssemblyOutcome
GrowPoly

Examples

Some other nice examples to try

• SIFs
  • [0,0,1,0,2,0,0,3,0,4,0,5,7,6,0,0,0,0,8,0]
  • [1,1,1,1,2,0,3,0,4,9,5,9,6,7,7,7,8,0,9,0,10,0,0,0]
• Loops
  • [1,2,3,3,4,0,0,0]
  • [1,5,3,0,2,4,0,0,6,0,0,0]
• Nested Loops
  • [1,1,1,1,0,3,2,5,0,0,6,4]
  • [1,2,3,5,4,7,0,0,0,0,8,6]
• Unbounds
  • [1,1,1,1,2,0,2,0]
  • [1,2,0,3,0,4,0,4]
• Sterics
  • [0,5,2,0,1,3,0,0,1,0,0,4,0,0,0,6]
  • [1,3,0,0,4,5,2,0,0,0,0,6]

Advanced bits

More information can be found via source or using

help(NAME_OF_FUNCTION)

in an interactive setting

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Misc

Homepage!

https://www.tcm.phy.cam.ac.uk/profiles/asl47/