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If there are samples in the samples.json file that didn't get run through the qc generation workflow, the general_parse_stats.py file will exit due to these lines:
It may be better to change sys.exit(1) to a continue, so that this script can handle parsing just the subset of samples that overlap
Similarly, a return could be used here to make the module more flexible
if not os.path.exists(args.samples_json):
print('could not find file: {}!'.format(args.samples_json))
sys.exit(1)
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