Merge pull request #27 from fangohr/update-versions

Update versions

Author: fangohr

Dockerfile

@@ -1,7 +1,7 @@
 FROM debian:bullseye-slim
 
-RUN apt-get update -y && apt-get install -y texlive-xetex latexmk texlive-xetex fonts-freefont-otf \
-	python3 python3-pip git zile
+RUN apt-get update -y && apt-get install -y texlive-xetex latexmk texlive-xetex \
+	texlive-fonts-extra fonts-freefont-otf python3 python3-pip git zile
 
 COPY poetry.lock pyproject.toml /opt/
 
@@ -13,4 +13,8 @@ RUN poetry install -vvv
 
 RUN mkdir -p /io
 WORKDIR /io
+
+# Need this for one nbval and chapter 1
+RUN ln -s /usr/bin/python3 /usr/local/bin/python
+
 CMD ["/bin/bash"]

book/01-introduction.ipynb

@@ -291,7 +291,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": 1,
    "metadata": {},
    "outputs": [
     {
@@ -316,14 +316,15 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": 2,
    "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "This is the content of the file hello.txt\n"
+      "This is the content of the file hello.txt\n",
+      "\n"
      ]
     }
    ],
@@ -409,7 +410,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -423,7 +424,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.1"
+   "version": "3.9.7"
   }
  },
  "nbformat": 4,

book/12-symbolic-computation.ipynb

@@ -120,7 +120,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 11,
+   "execution_count": 1,
    "metadata": {},
    "outputs": [
     {
@@ -129,7 +129,7 @@
        "'1.00000000000000000000'"
       ]
      },
-     "execution_count": 11,
+     "execution_count": 1,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -140,7 +140,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 12,
+   "execution_count": 2,
    "metadata": {},
    "outputs": [
     {
@@ -149,7 +149,7 @@
        "'0.10000000000000000555'"
       ]
      },
-     "execution_count": 12,
+     "execution_count": 2,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -160,7 +160,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 13,
+   "execution_count": 3,
    "metadata": {},
    "outputs": [
     {
@@ -169,7 +169,7 @@
        "'0.20000000000000001110'"
       ]
      },
-     "execution_count": 13,
+     "execution_count": 3,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -180,7 +180,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 14,
+   "execution_count": 4,
    "metadata": {},
    "outputs": [
     {
@@ -189,7 +189,7 @@
        "'0.29999999999999998890'"
       ]
      },
-     "execution_count": 14,
+     "execution_count": 4,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -253,14 +253,14 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 15,
+   "execution_count": 5,
    "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "x =0.10000000000000001\n",
+      " x =0.10000000000000001\n",
       " x =0.20000000000000001\n",
       " x =0.30000000000000004\n",
       " x =0.40000000000000002\n",
@@ -291,14 +291,14 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 16,
+   "execution_count": 6,
    "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "x =0.10000000000000001\n",
+      " x =0.10000000000000001\n",
       " x =0.20000000000000001\n",
       " x =0.30000000000000004\n",
       " x =0.40000000000000002\n",
@@ -319,10 +319,8 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 17,
-   "metadata": {
-    "collapsed": true
-   },
+   "execution_count": 7,
+   "metadata": {},
    "outputs": [],
    "source": [
     "x=0.10000000000000001\n",
@@ -355,7 +353,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 18,
+   "execution_count": 8,
    "metadata": {},
    "outputs": [
     {
@@ -404,7 +402,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 19,
+   "execution_count": 9,
    "metadata": {},
    "outputs": [
     {
@@ -413,11 +411,11 @@
      "text": [
       "loop using float dx:\n",
       " deviation is -1.88483681995422e-08\n",
-      "float loop n=100000 takes 0.00778 seconds\n",
+      "float loop n=100000 takes 0.00408 seconds\n",
       "loop using sympy symbolic dx:\n",
       " deviation is                0\n",
-      "sympy loop n = 100000 takes 1.61389 seconds\n",
-      "Symbolic loop is a factor 207.4 slower.\n"
+      "sympy loop n = 100000 takes 0.34109 seconds\n",
+      "Symbolic loop is a factor 83.6 slower.\n"
      ]
     }
    ],
@@ -506,7 +504,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -520,9 +518,9 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.6-final"
+   "version": "3.9.7"
   }
  },
  "nbformat": 4,
  "nbformat_minor": 1
-}
+}

book/13-numeric-computation.ipynb

@@ -38,7 +38,21 @@ html:
 
 # Allow parsing of "<img src=..." tags in markdown cells (used in Chapter 15 on visualisation)
 parse:
-  myst_extended_syntax: true
+  myst_enable_extensions:  # default extensions to enable in the myst parser. See https://myst-parser.readthedocs.io/en/latest/using/syntax-optional.html
+    # - amsmath
+    - colon_fence
+    # - deflist
+    - dollarmath
+    # - html_admonition
+    - html_image
+    # - linkify
+    # - replacements
+    # - smartquotes
+    - substitution
+    - tasklist
+  myst_url_schemes: [mailto, http, https] # URI schemes that will be recognised as external URLs in Markdown links
+  # myst_dmath_double_inline: true  # Allow display math ($$) within an inline context
+
 
 
 sphinx:

book/14-numpy.ipynb

@@ -1,9 +1,8 @@
-# Table of content
-# Learn more at https://jupyterbook.org/customize/toc.html
-#
-- file: opening
+format: jb-article
+root: opening
+options:
   numbered: true
-
+sections:
 - file: 01-introduction
 - file: 02-powerful-calculator
 - file: 03-data-types-structures