feat-wip: translate activate_conda and config.bat to .sh files for macos compatibility

Author: DamienGilliard

cmake/activate_conda.sh

@@ -0,0 +1,39 @@
+#!/bin/zsh
+########################################################################
+# check if conda is available
+# check that diff_check environment is available
+# activate it
+########################################################################
+
+# Check if conda command is available
+echo "Checking if conda command is available..."
+if ! command -v conda >/dev/null 2>&1; then
+    echo "conda command not found, you won't be able to build the python wrap for diffcheck. Please install Anaconda or Miniconda first."
+    exit 1
+fi
+echo "Conda command is available."
+
+# Check if the diff_check environment is available
+if ! conda env list | grep -q 'diff_check'; then
+    echo "diff_check environment not found, you should create one by running:"
+    echo "$ conda env create -f environment.mac.yml"
+    exit 1
+else
+    echo "diff_check environment is available, updating it now..."
+    if conda env update --name diff_check --file environment.mac.yml --prune; then
+        echo "Environment updated successfully."
+    else
+        echo "Failed to update diff_check environment, please check the environment.mac.yml file."
+        exit 1
+    fi
+fi
+echo "diff_check environment is up to date."
+
+# Check if a different environment than diff_check is activated, if so deactivate it
+active_env_name=$(conda info --envs | awk '/\*/ {print $1}')
+if [[ "$active_env_name" != "diff_check" && -n "$active_env_name" ]]; then
+    echo "You should deactivate $active_env_name first with 'conda deactivate' and 'conda activate diff_check' before running this script."
+    exit 1
+fi
+
+echo "You can start the cmake config now ..."

cmake/config.sh

@@ -0,0 +1,5 @@
+# activate the conda diff_check environment otherwise the python wrap won't work
+call cmake/activate_conda.sh
+
+#configure the project
+conda run --name diff_check --no-capture-output cmake -S . -B build -DCMAKE_BUILD_TYPE=Release