Skip to content

merge.gct error #27

@oena

Description

@oena

even when matrix_only = T, merge.gct will add metadata of one GCT object to output. Can be fixed by setting cdesc to an empty dataframe as follows, but shouldn't be occurring in the first place:

overlap_tsne_modz <- merge.gct(merge.gct(xpr_b_for_tsne, xpr_lm_for_tsne,
dimension = "column", matrix_only = T),
xpr_c_for_tsne, dimension = "column", matrix_only = T)
overlap_tsne_modz@cdesc <- data.frame(id=overlap_tsne_modz@cid)
overlap_tsne_modz <- annotate.gct(overlap_tsne_modz, overlap_sigs, dimension="column", keyfield = "sig_id")

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions