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lines changed

compas_python_utils/preprocessing/compasConfigDefault.yaml

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@@ -1,5 +1,5 @@
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##~!!~## COMPAS option values
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##~!!~## File Created Thu May 1 20:17:56 2025 by COMPAS v03.18.01
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##~!!~## File Created Sun May 25 00:33:11 2025 by COMPAS v03.20.00
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##~!!~##
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##~!!~## The default COMPAS YAML file (``compasConfigDefault.yaml``), as distributed, has
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##~!!~## all COMPAS option entries commented so that the COMPAS default value for the
@@ -76,17 +76,20 @@ numericalChoices:
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# --logfile-pulsar-evolution-record-types: -1 # Default: -1
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# --logfile-rlof-parameters-record-types: -1 # Default: -1
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# --logfile-supernovae-record-types: -1 # Default: -1
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# --logfile-system-snapshot-log-record-types: -1 # Default: -1
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# --logfile-system-parameters-record-types: -1 # Default: -1
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# --grid-lines-to-process: 9223372036854775807 # Default: 9223372036854775807
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# --grid-start-line: 0 # Default: 0
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# --hdf5-chunk-size: 100000 # Default: 100000
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# --hdf5-buffer-size: 1 # Default: 1
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# --log-level: 0 # Default: 0
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# --mass-change-fraction: 0.001000 # Default: 0.001000 # approximate desired fractional changes in stellar mass per timestep
86-
# --maximum-evolution-time: 13700.00 # Default: 13700.00 # maximum physical time a system can be evolved [Myr]
87+
# --maximum-evolution-time: 14021.28 # Default: 14021.28 # maximum physical time a system can be evolved [Myr]
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# --maximum-number-timestep-iterations: 99999 # Default: 99999
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# --number-of-systems: 10 # Default: 10 # number of systems per batch
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# --radial-change-fraction: 0.100000 # Default: 0.100000 # approximate desired fractional changes in stellar radius per timestep
91+
# --system-snapshot-age-thresholds: '{ }' # Default: '' # age thresholds for the system snapshot log
92+
# --system-snapshot-time-thresholds: '{ }' # Default: '' # time thresholds for the system snapshot log
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# --timestep-multiplier: 1.000000 # Default: 1.000000 # optional multiplier relative to default time step duration
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# --timestep-multipliers: '{ }' # Default: '' # optional phase-dependent multipliers relative to default time step duration
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@@ -271,7 +274,7 @@ stringChoices:
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# --common-envelope-mass-accretion-prescription: 'ZERO' # Default: 'ZERO' # Options: ['CHEVALIER','MACLEOD','UNIFORM','CONSTANT','ZERO']
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273276
### TIDES
274-
# --tides-prescription: 'NONE' # Default: 'NONE' # Options: ['KAPIL2024','PERFECT','NONE']
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# --tides-prescription: 'NONE' # Default: 'NONE' # Options: ['KAPIL2025','PERFECT','NONE']
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### SUPERNOVAE, KICKS AND REMNANTS
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# --black-hole-kicks-mode: 'FALLBACK' # Default: 'FALLBACK' # Options: ['FALLBACK','ZERO','REDUCED','FULL']
@@ -296,6 +299,7 @@ stringChoices:
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# --logfile-rlof-parameters: 'BSE_RLOF' # Default: 'BSE_RLOF'
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# --logfile-supernovae: 'BSE_Supernovae' # Default: 'BSE_Supernovae'
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# --logfile-switch-log: 'BSE_Switch_Log' # Default: 'BSE_Switch_Log'
302+
# --logfile-system-snapshot-log: 'BSE_System_Snapshot_Log' # Default: 'BSE_System_Snapshot_Log'
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# --logfile-system-parameters: 'BSE_System_Parameters' # Default: 'BSE_System_Parameters'
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# --output-path: '.' # Default: '.'
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online-docs/README.rst

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@@ -37,15 +37,12 @@ In the repository root directory:
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View results in 'docs/online-docs/_build/html/index.html'
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Make sure there arnt any broken links! See the build logs:
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Make sure there aren't any broken links! See the build logs:
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42-
```
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(pages/User guide/docker: line 22) ok https://stackoverflow.com/questions/23735149/what-is-the-difference-between-a-docker-image-and-a-container
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(pages/Developer guide/Developer build/docker-developer: line 23) ok https://www.atlassian.com/continuous-delivery/principles/continuous-integration-vs-delivery-vs-deployment
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(pages/User guide/Running COMPAS/running-via-docker: line 41) broken https://stackoverflow.com/questions/23735149/what-is-the-difference-between-a-docker-image-and-a-container#:~:text=An%20instance%20of%20an%20image,of%20layers%20as%20you%20describe.&text=You%20can%20see%20all%20your,an%20image%20is%20a%20container - Anchor '%3A~%3Atext%3DAn%20instance%20of%20an%20image%2Cof%20layers%20as%20you%20describe.%26text%3DYou%20can%20see%20all%20your%2Can%20image%20is%20a%20container' not found
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(pages/User guide/docker: line 49) ok https://www.docker.com/
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```
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.. (pages/User guide/docker: line 22) ok https://stackoverflow.com/questions/23735149/what-is-the-difference-between-a-docker-image-and-a-container
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.. (pages/Developer guide/Developer build/docker-developer: line 23) ok https://www.atlassian.com/continuous-delivery/principles/continuous-integration-vs-delivery-vs-deployment
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.. (pages/User guide/Running COMPAS/running-via-docker: line 41) broken https://stackoverflow.com/questions/23735149/what-is-the-difference-between-a-docker-image-and-a-container#:~:text=An%20instance%20of%20an%20image,of%20layers%20as%20you%20describe.&text=You%20can%20see%20all%20your,an%20image%20is%20a%20container - Anchor '%3A~%3Atext%3DAn%20instance%20of%20an%20image%2Cof%20layers%20as%20you%20describe.%26text%3DYou%20can%20see%20all%20your%2Can%20image%20is%20a%20container' not found
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.. (pages/User guide/docker: line 49) ok https://www.docker.com/
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Pushing the changes online

online-docs/pages/Developer guide/Services/Program options/services-program-options.rst

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To add a new program option, take the following steps (these are duplicated at the top of the ``Options.cpp`` source file):
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1. Decide on a string for the option - this is the string the user will use on the commandline or in the grid file (e.g. "random-seed"). The convention is hyphenated lower case. Try to be consistent with existing option names. For example, if you are adding a new prescription for something, make sure the option name ends with "-prescription", or if you are adding a new distribution for something, make sure the option name ends with "-distribution". */
33+
1. Decide on a string for the option - this is the string the user will use on the commandline or in the grid file (e.g. "random-seed"). The convention is hyphenated lower case. Try to be consistent with existing option names. For example, if you are adding a new prescription for something, make sure the option name ends with "-prescription", or if you are adding a new distribution for something, make sure the option name ends with "-distribution".
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2. Decide on a class member variable name for the option (e.g. m_RandomSeed).
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online-docs/pages/User guide/COMPAS output/standard-logfiles-default-record-specifications-BSE-detailed.rst renamed to online-docs/pages/User guide/COMPAS output/standard-logfiles-default-record-specifications-BSE-detailed-output.rst

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BSE system snapshot
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===================
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4+
Default record definition for the BSE System Snapshot log file::
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6+
const ANY_PROPERTY_VECTOR BSE_SYSTEM_SNAPSHOT_LOG_REC = {
7+
BINARY_PROPERTY::RANDOM_SEED,
8+
BINARY_PROPERTY::DT,
9+
BINARY_PROPERTY::TIME,
10+
BINARY_PROPERTY::UNBOUND,
11+
BINARY_PROPERTY::SEMI_MAJOR_AXIS_RSOL,
12+
BINARY_PROPERTY::ECCENTRICITY,
13+
STAR_1_PROPERTY::MZAMS,
14+
STAR_2_PROPERTY::MZAMS,
15+
STAR_1_PROPERTY::MASS_0,
16+
STAR_2_PROPERTY::MASS_0,
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STAR_1_PROPERTY::MASS,
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STAR_2_PROPERTY::MASS,
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STAR_1_PROPERTY::ENV_MASS,
20+
STAR_2_PROPERTY::ENV_MASS,
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STAR_1_PROPERTY::CORE_MASS,
22+
STAR_2_PROPERTY::CORE_MASS,
23+
STAR_1_PROPERTY::HE_CORE_MASS,
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STAR_2_PROPERTY::HE_CORE_MASS,
25+
STAR_1_PROPERTY::CO_CORE_MASS,
26+
STAR_2_PROPERTY::CO_CORE_MASS,
27+
STAR_1_PROPERTY::RADIUS,
28+
STAR_2_PROPERTY::RADIUS,
29+
BINARY_PROPERTY::ROCHE_LOBE_RADIUS_1,
30+
BINARY_PROPERTY::ROCHE_LOBE_RADIUS_2,
31+
STAR_1_PROPERTY::OMEGA,
32+
STAR_2_PROPERTY::OMEGA,
33+
STAR_1_PROPERTY::OMEGA_BREAK,
34+
STAR_2_PROPERTY::OMEGA_BREAK,
35+
STAR_1_PROPERTY::INITIAL_STELLAR_TYPE,
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STAR_2_PROPERTY::INITIAL_STELLAR_TYPE,
37+
STAR_1_PROPERTY::STELLAR_TYPE,
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STAR_2_PROPERTY::STELLAR_TYPE,
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STAR_1_PROPERTY::AGE,
40+
STAR_2_PROPERTY::AGE,
41+
STAR_1_PROPERTY::LUMINOSITY,
42+
STAR_2_PROPERTY::LUMINOSITY,
43+
STAR_1_PROPERTY::TEMPERATURE,
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STAR_2_PROPERTY::TEMPERATURE,
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STAR_1_PROPERTY::ANGULAR_MOMENTUM,
46+
STAR_2_PROPERTY::ANGULAR_MOMENTUM,
47+
STAR_1_PROPERTY::DYNAMICAL_TIMESCALE,
48+
STAR_2_PROPERTY::DYNAMICAL_TIMESCALE,
49+
STAR_1_PROPERTY::THERMAL_TIMESCALE,
50+
STAR_2_PROPERTY::THERMAL_TIMESCALE,
51+
STAR_1_PROPERTY::NUCLEAR_TIMESCALE,
52+
STAR_2_PROPERTY::NUCLEAR_TIMESCALE,
53+
STAR_1_PROPERTY::ZETA_SOBERMAN,
54+
STAR_2_PROPERTY::ZETA_SOBERMAN,
55+
STAR_1_PROPERTY::ZETA_SOBERMAN_HE,
56+
STAR_2_PROPERTY::ZETA_SOBERMAN_HE,
57+
STAR_1_PROPERTY::ZETA_HURLEY,
58+
STAR_2_PROPERTY::ZETA_HURLEY,
59+
STAR_1_PROPERTY::ZETA_HURLEY_HE,
60+
STAR_2_PROPERTY::ZETA_HURLEY_HE,
61+
STAR_1_PROPERTY::MASS_LOSS_DIFF,
62+
STAR_2_PROPERTY::MASS_LOSS_DIFF,
63+
STAR_1_PROPERTY::DOMINANT_MASS_LOSS_RATE,
64+
STAR_2_PROPERTY::DOMINANT_MASS_LOSS_RATE,
65+
STAR_1_PROPERTY::MASS_TRANSFER_DIFF,
66+
STAR_2_PROPERTY::MASS_TRANSFER_DIFF,
67+
BINARY_PROPERTY::TOTAL_ANGULAR_MOMENTUM,
68+
BINARY_PROPERTY::TOTAL_ENERGY,
69+
STAR_1_PROPERTY::METALLICITY,
70+
STAR_2_PROPERTY::METALLICITY,
71+
BINARY_PROPERTY::MASS_TRANSFER_TRACKER_HISTORY,
72+
STAR_1_PROPERTY::PULSAR_MAGNETIC_FIELD,
73+
STAR_2_PROPERTY::PULSAR_MAGNETIC_FIELD,
74+
STAR_1_PROPERTY::PULSAR_SPIN_PERIOD,
75+
STAR_2_PROPERTY::PULSAR_SPIN_PERIOD,
76+
STAR_1_PROPERTY::PULSAR_SPIN_DOWN_RATE,
77+
STAR_2_PROPERTY::PULSAR_SPIN_DOWN_RATE,
78+
STAR_1_PROPERTY::PULSAR_BIRTH_PERIOD,
79+
STAR_2_PROPERTY::PULSAR_BIRTH_PERIOD,
80+
STAR_1_PROPERTY::PULSAR_BIRTH_SPIN_DOWN_RATE,
81+
STAR_2_PROPERTY::PULSAR_BIRTH_SPIN_DOWN_RATE,
82+
STAR_1_PROPERTY::RADIAL_EXPANSION_TIMESCALE,
83+
STAR_2_PROPERTY::RADIAL_EXPANSION_TIMESCALE,
84+
BINARY_PROPERTY::RLOF_MASS_LOSS_RATE,
85+
BINARY_PROPERTY::RLOF_MASS_TRANSFER_TIMESCALE,
86+
BINARY_PROPERTY::RLOF_ACCRETION_EFFICIENCY
87+
};
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online-docs/pages/User guide/COMPAS output/standard-logfiles-default-record-specifications-SSE-detailed.rst renamed to online-docs/pages/User guide/COMPAS output/standard-logfiles-default-record-specifications-SSE-detailed-output.rst

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SSE system snapshot
2+
===================
3+
4+
Default record definition for the SSE System Snapshot log file::
5+
6+
const ANY_PROPERTY_VECTOR SSE_SYSTEM_SNAPSHOT_LOG_REC = {
7+
STAR_PROPERTY::AGE,
8+
STAR_PROPERTY::DT,
9+
STAR_PROPERTY::TIME,
10+
STAR_PROPERTY::STELLAR_TYPE,
11+
STAR_PROPERTY::METALLICITY,
12+
STAR_PROPERTY::MASS_0,
13+
STAR_PROPERTY::MASS,
14+
STAR_PROPERTY::RADIUS,
15+
STAR_PROPERTY::RZAMS,
16+
STAR_PROPERTY::LUMINOSITY,
17+
STAR_PROPERTY::TEMPERATURE,
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STAR_PROPERTY::CORE_MASS,
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STAR_PROPERTY::CO_CORE_MASS,
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STAR_PROPERTY::HE_CORE_MASS,
21+
STAR_PROPERTY::MDOT,
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STAR_PROPERTY::DOMINANT_MASS_LOSS_RATE,
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STAR_PROPERTY::TIMESCALE_MS
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};
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online-docs/pages/User guide/COMPAS output/standard-logfiles-default-record-specifications.rst

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.. toctree::
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:maxdepth: 1
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standard-logfiles-default-record-specifications-SSE-detailed
13-
standard-logfiles-default-record-specifications-SSE-pulsars
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standard-logfiles-default-record-specifications-SSE-system-snapshot
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standard-logfiles-default-record-specifications-SSE-sysparms
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standard-logfiles-default-record-specifications-SSE-detailed-output
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standard-logfiles-default-record-specifications-SSE-supernovae
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standard-logfiles-default-record-specifications-SSE-pulsars
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standard-logfiles-default-record-specifications-SSE-switchlog
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standard-logfiles-default-record-specifications-SSE-sysparms
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For Binary Star Evolution (BSE):
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.. toctree::
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:maxdepth: 1
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standard-logfiles-default-record-specifications-BSE-system-snapshot
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standard-logfiles-default-record-specifications-BSE-sysparms
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standard-logfiles-default-record-specifications-BSE-detailed
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standard-logfiles-default-record-specifications-BSE-detailed-output
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standard-logfiles-default-record-specifications-BSE-supernovae
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standard-logfiles-default-record-specifications-BSE-dco
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standard-logfiles-default-record-specifications-BSE-ce
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standard-logfiles-default-record-specifications-BSE-pulsars
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standard-logfiles-default-record-specifications-BSE-rlof
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standard-logfiles-default-record-specifications-BSE-switchlog
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online-docs/pages/User guide/COMPAS output/standard-logfiles-record-specification-binary.rst

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:header-rows: 0
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:class: aligned-text
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* - :cspan:`2` **SYNCHRONIZATION_TIMESCALE**
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* - :cspan:`2` **SYNCHRONIZATION_TIMESCALE_1**
18221822
-
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* - Data type:
18241824
- DOUBLE
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* - COMPAS variable:
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- BaseBinaryStar::m_SynchronizationTimescale
1826+
- BaseBinaryStar::m_SynchronizationTimescale1
18271827
* - Description:
1828-
- Tidal synchronisation timescale (Myr).
1828+
- Tidal synchronisation timescale for the primary star (Myr).
18291829
* - Header String:
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- Tau_Sync
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- Tau_Sync(1)
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.. flat-table::
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:widths: 25 75 1 1
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:header-rows: 0
1835+
:class: aligned-text
1836+
1837+
* - :cspan:`2` **SYNCHRONIZATION_TIMESCALE_2**
1838+
-
1839+
* - Data type:
1840+
- DOUBLE
1841+
* - COMPAS variable:
1842+
- BaseBinaryStar::m_SynchronizationTimescale2
1843+
* - Description:
1844+
- Tidal synchronisation timescale for the secondary star (Myr).
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* - Header String:
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- Tau_Sync(2)
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.. flat-table::
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:widths: 25 75 1 1
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:ref:`Back to Top <binary-props-top>`
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.. flat-table::
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:widths: 25 75 1 1
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:header-rows: 0
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:class: aligned-text
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* - :cspan:`2` **TIDAL_POTENTIAL_LOVE_NUMBER_10_1, TIDAL_POTENTIAL_LOVE_NUMBER_12_1, TIDAL_POTENTIAL_LOVE_NUMBER_22_1, TIDAL_POTENTIAL_LOVE_NUMBER_32_1**
1922+
-
1923+
* - Data type:
1924+
- DOUBLE
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* - COMPAS variable:
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- `derived from` BaseStar::CalculateImKnmTidal()
1927+
* - Description:
1928+
- l=2 components of the tidal potential Love number for the primary star, indexed by (n,m).
1929+
* - Header String:
1930+
- ImKnm1_10, ImKnm1_12, ImKnm1_22, ImKnm1_32
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.. flat-table::
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:widths: 25 75 1 1
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:header-rows: 0
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:class: aligned-text
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* - :cspan:`2` **TIDAL_POTENTIAL_LOVE_NUMBER_10_2, TIDAL_POTENTIAL_LOVE_NUMBER_12_2, TIDAL_POTENTIAL_LOVE_NUMBER_22_2, TIDAL_POTENTIAL_LOVE_NUMBER_32_2**
1938+
-
1939+
* - Data type:
1940+
- DOUBLE
1941+
* - COMPAS variable:
1942+
- `derived from` BaseStar::CalculateImKnmTidal()
1943+
* - Description:
1944+
- l=2 components of the tidal potential Love number for the secondary star, indexed by (n,m).
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* - Header String:
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- ImKnm2_10, ImKnm2_12, ImKnm2_22, ImKnm2_32
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.. flat-table::
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:widths: 25 75 1 1
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:header-rows: 0
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:class: aligned-text
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* - :cspan:`2` **TIDAL_POTENTIAL_LOVE_NUMBER_10_EQ_1, TIDAL_POTENTIAL_LOVE_NUMBER_12_EQ_1, TIDAL_POTENTIAL_LOVE_NUMBER_22_EQ_1, TIDAL_POTENTIAL_LOVE_NUMBER_32_EQ_1**
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-
1955+
* - Data type:
1956+
- DOUBLE
1957+
* - COMPAS variable:
1958+
- `derived from` BaseStar::CalculateImKnmEquilibrium()
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* - Description:
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- l=2 components of the equilibrium tidal potential Love number for the primary star, indexed by (n,m).
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* - Header String:
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- ImKnm1_10_eq, ImKnm1_12_eq, ImKnm1_22_eq, ImKnm1_32_eq
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.. flat-table::
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:widths: 25 75 1 1
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:header-rows: 0
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:class: aligned-text
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* - :cspan:`2` **TIDAL_POTENTIAL_LOVE_NUMBER_10_EQ_2, TIDAL_POTENTIAL_LOVE_NUMBER_12_EQ_2, TIDAL_POTENTIAL_LOVE_NUMBER_22_EQ_2, TIDAL_POTENTIAL_LOVE_NUMBER_32_EQ_2**
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-
1971+
* - Data type:
1972+
- DOUBLE
1973+
* - COMPAS variable:
1974+
- `derived from` BaseStar::CalculateImKnmEquilibrium()
1975+
* - Description:
1976+
- l=2 components of the equilibrium tidal potential Love number for the secondary star, indexed by (n,m).
1977+
* - Header String:
1978+
- ImKnm2_10_eq, ImKnm2_12_eq, ImKnm2_22_eq, ImKnm2_32_eq
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.. flat-table::
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:widths: 25 75 1 1
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:header-rows: 0
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:class: aligned-text
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* - :cspan:`2` **TIDAL_POTENTIAL_LOVE_NUMBER_10_DYN_1, TIDAL_POTENTIAL_LOVE_NUMBER_12_DYN_1, TIDAL_POTENTIAL_LOVE_NUMBER_22_DYN_1, TIDAL_POTENTIAL_LOVE_NUMBER_32_DYN_1**
1986+
-
1987+
* - Data type:
1988+
- DOUBLE
1989+
* - COMPAS variable:
1990+
- `derived from` BaseStar::CalculateImKnmDynamical()
1991+
* - Description:
1992+
- l=2 components of the dynamical tidal potential Love number for the primary star, indexed by (n,m).
1993+
* - Header String:
1994+
- ImKnm1_10_dyn, ImKnm1_12_dyn, ImKnm1_22_dyn, ImKnm1_32_dyn
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.. flat-table::
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:widths: 25 75 1 1
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:header-rows: 0
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:class: aligned-text
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* - :cspan:`2` **TIDAL_POTENTIAL_LOVE_NUMBER_10_DYN_2, TIDAL_POTENTIAL_LOVE_NUMBER_12_DYN_2, TIDAL_POTENTIAL_LOVE_NUMBER_22_DYN_2, TIDAL_POTENTIAL_LOVE_NUMBER_32_DYN_2**
2002+
-
2003+
* - Data type:
2004+
- DOUBLE
2005+
* - COMPAS variable:
2006+
- `derived from` BaseStar::CalculateImKnmDynamical()
2007+
* - Description:
2008+
- l=2 components of the dynamical tidal potential Love number for the secondary star, indexed by (n,m).
2009+
* - Header String:
2010+
- ImKnm2_10_dyn, ImKnm2_12_dyn, ImKnm2_22_dyn, ImKnm2_32_dyn
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.. flat-table::
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:widths: 25 75 1 1
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:header-rows: 0

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