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Description
Window 10
python 3.11
pip install successful.
Try to run the examples in jupyter notebooks. These are the errors.
CalledProcessError Traceback (most recent call last)
File D:\pywd\SSA\sppy\SpatialPy-main\spatialpy\solvers\solver.py:492, in Solver.compile(self, debug, profile)
491 try:
--> 492 result = subprocess.check_output(make_cmd, stderr=subprocess.STDOUT)
493 if self.debug_level > 1:
File D:\Enviroments\anaconda3\envs\sppyv2\Lib\subprocess.py:465, in check_output(timeout, *popenargs, **kwargs)
463 kwargs['input'] = empty
--> 465 return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
466 **kwargs).stdout
File D:\Enviroments\anaconda3\envs\sppyv2\Lib\subprocess.py:569, in run(input, capture_output, timeout, check, *popenargs, **kwargs)
568 if check and retcode:
--> 569 raise CalledProcessError(retcode, process.args,
570 output=stdout, stderr=stderr)
571 return CompletedProcess(process.args, retcode, stdout, stderr)
CalledProcessError: Command '['D:\Enviroments\anaconda3\envs\sppyv2\python.exe', '-m', 'SCons', '-CC:\Users\taiar\AppData\Local\Temp\spatialpy_build_berydhpb', '-fD:\pywd\SSA\sppy\SpatialPy-main\spatialpy\solvers/c_base/ssa_sdpd-c-simulation-engine/build/SConstruct', 'ROOT=D:\pywd\SSA\sppy\SpatialPy-main\spatialpy\solvers/c_base/ssa_sdpd-c-simulation-engine', 'ROOTINC=D:\pywd\SSA\sppy\SpatialPy-main\spatialpy\solvers/c_base/ssa_sdpd-c-simulation-engine', 'COREDIR=C:\Users\taiar\AppData\Local\Temp\spatialpy_core\taiar', 'MODEL=C:\Users\taiar\AppData\Local\Temp\spatialpy_build_berydhpb\SpatialBirthDeath_generated_model.cpp', 'BUILD=C:\Users\taiar\AppData\Local\Temp\spatialpy_build_berydhpb']' returned non-zero exit status 2.
During handling of the above exception, another exception occurred:
SimulationError Traceback (most recent call last)
Cell In[5], line 1
----> 1 results = model.run()
File D:\pywd\SSA\sppy\SpatialPy-main\spatialpy\core\model.py:1055, in Model.run(self, number_of_trajectories, seed, timeout, number_of_threads, debug_level, debug, profile)
1051 from spatialpy.solvers.solver import Solver # pylint: disable=import-outside-toplevel
1053 sol = Solver(self, debug_level=debug_level)
-> 1055 return sol.run(number_of_trajectories=number_of_trajectories, seed=seed, timeout=timeout,
1056 number_of_threads=number_of_threads, debug=debug, profile=profile)
File D:\pywd\SSA\sppy\SpatialPy-main\spatialpy\solvers\solver.py:544, in Solver.run(self, number_of_trajectories, seed, timeout, number_of_threads, debug, profile, verbose)
542 # Check if compiled, call compile() if not.
543 if not self.is_compiled:
--> 544 self.compile(debug=debug, profile=profile)
546 # Execute the solver
547 for run_ndx in range(number_of_trajectories):
File D:\pywd\SSA\sppy\SpatialPy-main\spatialpy\solvers\solver.py:500, in Solver.compile(self, debug, profile)
498 except Exception:
499 pass
--> 500 raise SimulationError(f"Compilation of solver failed, return_code={err.returncode}")
501 except OSError as err:
502 cmd = " ".join(make_cmd)
SimulationError: Compilation of solver failed, return_code=2