From d36606f1ad5ca1f6833dda33a7cccbdcc2bc185c Mon Sep 17 00:00:00 2001 From: Steffen Moeller Date: Tue, 7 Jul 2015 14:58:29 +0200 Subject: [PATCH 1/2] antibody.py: default H1_end --- antibody/antibody.py | 1 + 1 file changed, 1 insertion(+) diff --git a/antibody/antibody.py b/antibody/antibody.py index ad40aef9e..513257de6 100755 --- a/antibody/antibody.py +++ b/antibody/antibody.py @@ -548,6 +548,7 @@ def IdentifyCDRs(light_chain, heavy_chain): FR_H1 = heavy_chain[len_FR_H1:H1_start] else: print "H1 detected: False" + H1_end = -33 heavy_second = heavy_chain[H1_end+33+15:H1_end+33+15+95+len_FR_H1] if len(heavy_chain) > 140 else heavy_chain[H1_end+33+15:] From 6cb79af752a212ef38b488c7f91d74d20f076a0a Mon Sep 17 00:00:00 2001 From: Steffen Moeller Date: Tue, 7 Jul 2015 17:22:09 +0200 Subject: [PATCH 2/2] antibody.py L1_end use before init fix --- antibody/antibody.py | 1 + 1 file changed, 1 insertion(+) diff --git a/antibody/antibody.py b/antibody/antibody.py index 513257de6..8da18a36d 100755 --- a/antibody/antibody.py +++ b/antibody/antibody.py @@ -489,6 +489,7 @@ def IdentifyCDRs(light_chain, heavy_chain): FR_L1 = light_chain[len_FR_L1:L1_start] else: print "L1 detected: False" + L1_end = -16 light_second = light_chain[L1_end+16+7:L1_end+16+7+80] if len(light_chain) > 130 else light_chain[L1_end+16+7:]