diff --git a/antibody/antibody.py b/antibody/antibody.py index ad40aef9e..8da18a36d 100755 --- a/antibody/antibody.py +++ b/antibody/antibody.py @@ -489,6 +489,7 @@ def IdentifyCDRs(light_chain, heavy_chain): FR_L1 = light_chain[len_FR_L1:L1_start] else: print "L1 detected: False" + L1_end = -16 light_second = light_chain[L1_end+16+7:L1_end+16+7+80] if len(light_chain) > 130 else light_chain[L1_end+16+7:] @@ -548,6 +549,7 @@ def IdentifyCDRs(light_chain, heavy_chain): FR_H1 = heavy_chain[len_FR_H1:H1_start] else: print "H1 detected: False" + H1_end = -33 heavy_second = heavy_chain[H1_end+33+15:H1_end+33+15+95+len_FR_H1] if len(heavy_chain) > 140 else heavy_chain[H1_end+33+15:]