Update README.md to include Codecov badge and change License badge color #6

	name: CI

	on:
	push:
	branches: [main]
	pull_request:
	branches: [main]

	jobs:
	lint:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install ruff mypy
	pip install -e ".[dev]"
	- name: Run Ruff linter
	run: ruff check src/
	- name: Run Ruff formatter check
	run: ruff format --check src/
	- name: Run MyPy
	run: mypy src/omophub

	test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.10", "3.11", "3.12", "3.13"]
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -e ".[dev]"
	- name: Run unit tests with coverage
	run: \|
	pytest tests/unit --cov=omophub --cov-report=xml --cov-report=term-missing
	- name: Upload coverage to Codecov
	if: matrix.python-version == '3.12'
	uses: codecov/codecov-action@v4
	with:
	files: ./coverage.xml
	fail_ci_if_error: false
	token: ${{ secrets.CODECOV_TOKEN }}

	integration:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -e ".[dev]"
	- name: Run integration tests
	env:
	TEST_API_KEY: ${{ secrets.TEST_API_KEY }}
	run: \|
	pytest tests/integration -v

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