diff --git a/docs/source/features.rst b/docs/source/features.rst index c226ec8..6a550e3 100644 --- a/docs/source/features.rst +++ b/docs/source/features.rst @@ -62,8 +62,8 @@ NeMo toolkit, we leverage the data loader abstractions defined in Currently available data loaders - -* :class:`ReadPileupDataLoader` - encapsulates loading samples from VCF and using PileupEncoders to generate training data. - This type of data loader is typically useful for variant calling tasks which process BAMs and VCFs simultaneously. +* :class:`VariantDataLoader` - encapsulates a generalized loading for loading entries from VCF and applying + user defined input and label encoders to generate data training for training and test. This type of data loader is typically useful for tasks such as variant calling. * :class:`HDFDataLoader` - encapsulates a generalized, multi-threaded data loader for loading tensors from HDF files. This type of data loader is frequently used when data is prepared/serialized ahead of time into a HDF file and directly read from the HDF file during training/evaluation loops. diff --git a/docs/source/snippets/snp_zygosity_predictor_inference.py b/docs/source/snippets/snp_zygosity_predictor_inference.py index e7a2f5e..4a26870 100644 --- a/docs/source/snippets/snp_zygosity_predictor_inference.py +++ b/docs/source/snippets/snp_zygosity_predictor_inference.py @@ -22,7 +22,7 @@ import pathlib import torch -from variantworks.dataloader import ReadPileupDataLoader +from variantworks.dataloader import VariantDataLoader from variantworks.io.vcfio import VCFReader, VCFWriter from variantworks.networks import AlexNet from variantworks.encoders import PileupEncoder, ZygosityLabelDecoder @@ -52,8 +52,8 @@ bam = os.path.join(data_folder, "small_bam.bam") labels = os.path.join(data_folder, "candidates.vcf.gz") vcf_loader = VCFReader(vcf=labels, bams=[bam], is_fp=False) -test_dataset = ReadPileupDataLoader(ReadPileupDataLoader.Type.TEST, [vcf_loader], batch_size=32, - shuffle=False, sample_encoder=pileup_encoder) +test_dataset = VariantDataLoader(VariantDataLoader.Type.TEST, [vcf_loader], batch_size=32, + shuffle=False, input_encoder=pileup_encoder) # Create inference DAG encoding = test_dataset() diff --git a/docs/source/snippets/snp_zygosity_predictor_training.py b/docs/source/snippets/snp_zygosity_predictor_training.py index b15326d..8d5f4b2 100644 --- a/docs/source/snippets/snp_zygosity_predictor_training.py +++ b/docs/source/snippets/snp_zygosity_predictor_training.py @@ -21,7 +21,7 @@ import os import pathlib -from variantworks.dataloader import ReadPileupDataLoader +from variantworks.dataloader import VariantDataLoader from variantworks.io.vcfio import VCFReader from variantworks.networks import AlexNet from variantworks.encoders import PileupEncoder, ZygosityLabelEncoder @@ -59,15 +59,15 @@ vcf_loader = VCFReader(vcf=samples, bams=[bam], is_fp=False) # Create a data loader with custom sample and label encoder. -dataset_train = ReadPileupDataLoader(ReadPileupDataLoader.Type.TRAIN, [vcf_loader], - batch_size=32, shuffle=True, - sample_encoder=pileup_encoder, label_encoder=zyg_encoder) +dataset_train = VariantDataLoader(VariantDataLoader.Type.TRAIN, [vcf_loader], + batch_size=32, shuffle=True, + input_encoder=pileup_encoder, label_encoder=zyg_encoder) # Use CrossEntropyLoss to train. vz_ce_loss = nemo.backends.pytorch.common.losses.CrossEntropyLossNM(logits_ndim=2) # Create NeMo training DAG. -vz_labels, encoding = dataset_train() +encoding, vz_labels = dataset_train() vz = model(encoding=encoding) vz_loss = vz_ce_loss(logits=vz, labels=vz_labels) diff --git a/hooks/pre-push b/hooks/pre-push index db79cb7..aa0fa97 100755 --- a/hooks/pre-push +++ b/hooks/pre-push @@ -37,6 +37,14 @@ echo "" python $sdk_root_dir/ci/checks/check_copyright.py $sdk_root_dir/style_check +echo "" +echo "Running doc source checks..." +echo "" +for f in $(find docs/source/snippets/*.py | sort -r); do + logger "Executing \"${f}\"" + python "${f}" +done + cd $tests_dir echo "" echo "Running pre-push tests from $PWD..." diff --git a/samples/custom_encoder/README.md b/samples/custom_encoder/README.md new file mode 100644 index 0000000..e1249e3 --- /dev/null +++ b/samples/custom_encoder/README.md @@ -0,0 +1,23 @@ +# Custom Encoder Samples + +This sample covers how to write a custom encoder in `VariantWorks` using scalar +values from a VCF. Such a setup is useful when considering pipelines which may +require additional metadata information to be passed into the network along with, e.g. +the read pileup, to better inform the network about the context. + +## Training pipeline + +The training pipeline in this sample is kept extremely simple. The training and evaluation data +is generated using an online encoder (i.e. an encoder that gnerates tensors during the training pipeline) +and passed into a multi-layer perceptron. The objective of this pipeline is to predict the zygosity of +each variant only using metadata from the variant records. + +Key files in this sample are: + +1. `custom_encoder.py` - This file contains the custom encoder implementation for the VCF scalar values. +2. `custom_model.py` - This file contains a simple MLP model. +3. `pipeline.py` - The training and evaluation pipeline. + +## Data + +A sample training and evaluation VCF is available under the `data` folder. This can be used to run the sample. diff --git a/samples/custom_encoder/custom_encoder.py b/samples/custom_encoder/custom_encoder.py new file mode 100644 index 0000000..6256225 --- /dev/null +++ b/samples/custom_encoder/custom_encoder.py @@ -0,0 +1,52 @@ +# +# Copyright 2020 NVIDIA CORPORATION. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +# +"""Custom encoder that converts VCF scalar values into a torch tensor.""" + +import torch + +from variantworks.encoders import Encoder + + +class CustomEncoder(Encoder): + """An encoder that converts scalar VCF format values into a flattened tensor.""" + + def __init__(self, vcf_format_keys=[]): + """Constructor for the encoder. + + Args: + vcf_format_keys : A list of format keys to process for the encoding. + + Returns: + Instance of class. + """ + self._vcf_format_keys = vcf_format_keys + + def __call__(self, variant): + """Virtual function that implements the actual encoding. + + Returns: + VCF values in torch tensor. + """ + data = [] + for key in self._vcf_format_keys: + idx = variant.format.index(key) + val = variant.samples[0][idx] + if isinstance(val, list): + data.extend(val) + else: + data.append(val) + tensor = torch.FloatTensor(data) + return tensor diff --git a/samples/custom_encoder/custom_model.py b/samples/custom_encoder/custom_model.py new file mode 100644 index 0000000..5f6c853 --- /dev/null +++ b/samples/custom_encoder/custom_model.py @@ -0,0 +1,96 @@ +# +# Copyright 2020 NVIDIA CORPORATION. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +# +"""A simple MLP model for the sample.""" + +import torch +import torch.nn as nn + +from nemo.backends.pytorch.nm import TrainableNM +from nemo.utils.decorators import add_port_docs +from nemo.core.neural_types import NeuralType, LogitsType, VoidType +from nemo.core.neural_factory import DeviceType + + +class MLP(TrainableNM): + """A Neural Module for an MLP.""" + + @property + @add_port_docs() + def input_ports(self): + """Return definitions of module input ports. + + Returns: + Module input ports. + """ + return { + "encoding": NeuralType(('B', 'D'), VoidType()), + } + + @property + @add_port_docs() + def output_ports(self): + """Return definitions of module output ports. + + Returns: + Module output ports. + """ + return { + # Variant type + 'output_logit': NeuralType(('B', 'D'), LogitsType()), + } + + def __init__(self, num_input_nodes, num_hidden_nodes, num_output_logits, apply_softmax=False): + """Construct an AlexNet NeMo instance. + + Args: + num_input_nodes : Number of input nodes. + num_hidden_nodes : Size of hidden nodes. + num_output_logits : Number of output logits of classifier. + apply_softmax : Flag to optionally apply softmax to last layer's output. + + Returns: + Instance of class. + """ + super().__init__() + self._num_input_nodes = num_input_nodes + self._num_hidden_nodes = num_hidden_nodes + self._num_output_logits = num_output_logits + self._apply_softmax = apply_softmax + + self._fc1 = nn.Linear(self._num_input_nodes, self._num_hidden_nodes) + self._relu = nn.ReLU() + self._fc2 = nn.Linear(self._num_hidden_nodes, self._num_output_logits) + self._softmax = nn.Softmax(dim=1) + + self._device = torch.device( + "cuda" if self.placement == DeviceType.GPU else "cpu") + self.to(self._device) + + def forward(self, encoding): + """Abstract function to run the network. + + Args: + encoding : Input to run network on. + + Returns: + Output of forward pass. + """ + output = self._fc1(encoding) + output = self._relu(output) + output = self._fc2(output) + if self._apply_softmax: + output = self._softmax(output) + return output diff --git a/samples/custom_encoder/data/eval.vcf b/samples/custom_encoder/data/eval.vcf new file mode 100644 index 0000000..4a790ea --- /dev/null +++ b/samples/custom_encoder/data/eval.vcf @@ -0,0 +1,246 @@ +##fileformat=VCFv4.1 +##FILTER= +##fileDate=20160714 +##reference=human_g1k_v37.fasta +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= 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platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:556:136,127:155,138:620 +1 20012762 rs10917517 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:552:140,112:157,140:703 +1 20013785 rs4912016 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:137,132:172,169:1254 +1 20014739 rs7533981 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:131,141:165,193:1120 +1 20014753 rs7527271 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:118,132:151,170:1153 +1 20014827 rs7543480 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:125,131:160,166:1030 +1 20015955 rs10159394 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:449:98,101:126,127:827 +1 20016849 rs2050121 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:139,110:185,153:1037 +1 20016912 rs2050120 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:550:132,120:158,141:775 +1 20017596 rs4912017 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:514:119,106:143,138:626 +1 20017721 rs4912018 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:562:130,113:163,154:1229 +1 20017738 rs10917518 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:528:126,112:147,142:1000 +1 20018051 rs11581012 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:547:124,123:153,144:671 +1 20018077 rs11582254 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:512:117,124:141,135:566 +1 20018091 rs11581014 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:20018091_C_T:490:110,116:138,129:574 +1 20018096 rs11579480 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:20018091_C_T:486:109,117:139,125:473 +1 20018300 rs3748749 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:118,133:169,175:1076 +1 20018590 rs3748752 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:517:120,110:142,145:790 +1 20018780 rs6668463 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:530:128,116:154,139:1067 +1 20020044 rs6689496 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:567:141,116:174,130:529 +1 20020366 rs6672417 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:20020366_G_A:534:115,127:138,151:785 +1 20020389 rs1883566 G C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:20020366_G_A:573:123,131:159,156:741 +1 20020466 rs1883567 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:118,133:172,185:1369 +1 20020537 rs1883568 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:681:152,163:180,191:893 +1 20020576 rs1883569 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:697:162,158:193,180:551 +1 20020993 rs4370779 A G 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0|1:20020993_A_G:627:129,114:157,144:993 +1 20020994 rs4515815 C T 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0|1:20020993_A_G:626:127,115:155,145:993 +1 20021464 rs10799833 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:511:117,113:28,34:752 +1 20022063 rs4244007 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:111,126:139,150:878 +1 20023833 rs4912145 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:153,145:172,166:565 +1 20025383 rs6699160 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:578:126,115:169,161:1165 +1 20025979 rs58057967 C CATAT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:392:91,88:91,88:99 +1 20026354 rs3934193 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:134,125:148,150:694 +1 20026472 rs3934192 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:141,116:165,139:815 +1 20026572 rs3934191 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:129,112:168,134:862 +1 20026758 rs7547898 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:505:110,97:162,134:849 +1 20026901 rs4912146 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,253:118,358:536 +1 20026962 rs4912147 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:548:0,251:60,296:386 +1 20027034 rs71704175 ATCT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:528:0,240:58,58:405 +1 20027953 rs7544074 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:606:130,130:171,168:903 +1 20028222 rs10449254 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:478:114,116:136,117:494 +1 20028240 rs10449255 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:111,113:141,122:630 +1 20028476 rs12733480 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:469:100,97:138,128:731 +1 20028526 rs12728698 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:472:117,94:133,109:462 +1 20028588 rs12728840 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:468:119,76:20,32:517 +1 20028635 rs12728865 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:506:109,94:49,34:791 +1 20028698 rs12744679 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:414:91,86:112,97:373 +1 20029322 rs10709290 GC G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:143,167:46,38:1105 +1 20029876 rs6426820 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:116,121:147,152:806 +1 20030047 rs6426821 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:568:132,343:0,211:317 +1 20030463 rs6698258 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:118,99:155,153:865 +1 20030565 rs6657561 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:130,94:179,134:874 +1 20030836 rs1609560 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:138,107:183,153:1109 +1 20031148 rs6701316 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:585:122,132:40,39:1020 +1 20031317 rs72656102 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:126,114:177,153:947 +1 20034106 rs3885191 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:655:137,138:190,190:1222 +1 20035184 rs4457604 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:126,125:155,151:903 +1 20035649 rs12759415 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:641:143,154:179,164:1062 +1 20036763 rs11310431 AT A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:394:83,107:68,97:270 +1 20036890 rs4912019 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:139,130:199,175:1002 +1 20037489 rs35721361 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:633:156,132:189,153:1063 +1 20038740 rs12759485 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:643:135,132:193,177:1198 +1 20039820 rs6704156 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:707:157,144:213,187:1368 +1 20040619 rs4345827 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:125,125:184,162:845 +1 20041054 rs4484948 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:709:167,153:197,180:875 +1 20041550 rs7531409 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:820:186,182:233,215:808 +1 20042738 rs57727798 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:118,126:141,142:532 +1 20043015 rs12143443 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:499:117,109:140,121:431 +1 20044583 rs6426822 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:20044583_A_T:567:122,132:148,158:823 +1 20044588 rs6426823 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:20044583_A_T:562:117,134:144,159:774 +1 20047186 rs3934190 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:778:180,156:231,210:1378 +1 20048720 rs72658506 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:655:165,139:192,157:1075 +1 20049085 rs7539563 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:722:165,159:204,194:1281 +1 20049351 rs7539841 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:514:104,107:145,146:1264 +1 20050859 rs10917525 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:642:135,155:170,182:984 +1 20052373 rs3929668 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:571:123,128:151,168:938 +1 20054814 rs55968652 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:703:143,180:171,204:1037 +1 20055760 rs12402238 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:152,129:181,153:674 +1 20056609 rs10799835 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:660:163,146:187,164:987 +1 20056631 rs4486471 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:642:163,139:188,153:761 +1 20056759 rs4326647 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:682:142,161:182,193:998 +1 20061456 rs3850533 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,270:79,340:388 +1 20064575 rs1782469 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:714:1,322:94,397:474 +1 20066133 rs1266444 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:717:0,336:92,387:570 +1 20068235 . C CT 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:419:15,110,81:3,81,81:283 +1 20068235 . C CTT 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:419:15,110,81:3,81,81:283 +1 20069271 rs1266442 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:645:0,273:109,372:533 +1 20069547 rs1266441 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:709:134,429:0,293:152 +1 20076407 rs3215520 C CGGAT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:600:0,270:87,87:474 +1 20078134 rs17378010 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:795:0,362:97,437:525 +1 20083130 rs10917533 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:640:0,290:92,362:499 +1 20083197 rs12133589 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:541:0,240:73,307:415 +1 20083652 . C CG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:360:8,86,81:0,0,0:160 +1 20083652 . C CGG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:360:8,86,81:0,0,0:160 +1 20084582 rs761072 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:532:0,235:74,303:406 +1 20084990 rs2235656 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:576:0,281:0,268:307 +1 20087038 rs10917534 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,279:76,344:439 +1 20087406 rs1473688 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:663:0,320:55,358:376 +1 20088058 rs61768296 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:647:0,290:101,374:536 +1 20088102 rs61768297 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:620:1,286:81,348:478 +1 20088529 rs61768298 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:648:0,277:117,382:450 +1 20088570 rs61768299 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:607:0,278:80,344:447 +1 20089063 rs1473687 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:567:0,253:79,323:430 +1 20089410 rs61768300 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:576:1,267:61,319:373 +1 20089713 rs55818566 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:588:0,258:70,328:339 +1 20089866 rs2294637 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:629:0,277:78,355:387 +1 20089879 rs56256218 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:643:0,280:87,365:394 +1 20089905 rs2294636 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:602:0,265:81,341:429 +1 20089945 rs56354835 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,276:63,320:427 +1 20090146 rs55786126 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,274:51,306:377 +1 20090244 rs17369574 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:705:0,321:100,397:457 +1 20090481 rs16822845 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,234:83,306:435 +1 20090550 rs56263412 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,226:62,284:376 +1 20090601 rs55750064 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:546:0,246:65,305:397 +1 20090746 rs61768304 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:562:1,271:37,297:299 +1 20091017 rs61768305 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:589:0,276:68,321:333 +1 20091056 rs12035374 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:20091056_G_A:558:0,252:74,313:433 +1 20091075 rs61768306 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:20091056_G_A:556:0,249:69,313:372 +1 20091272 rs61768307 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:1,228:72,296:385 +1 20091436 rs61768313 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:543:0,244:47,288:338 +1 20091791 rs2281246 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,298:39,316:358 +1 20091859 rs16822850 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:678:0,309:88,372:499 +1 20091938 rs56132203 ACC A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=3;callsetnames=CGnormal,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1|1:20091938_ACC_A:349:0,277:72,72:316 +1 20091941 rs74964607 TAGAG T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=3;callsetnames=CGnormal,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1|1:20091938_ACC_A:352:0,280:72,72:316 +1 20091947 rs55681369 A T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=3;callsetnames=CGnormal,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1|1:20091938_ACC_A:348:0,276:72,72:316 +1 20091948 rs55932504 CAT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=3;callsetnames=CGnormal,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1|1:20091938_ACC_A:349:0,277:72,72:316 +1 20091962 rs1266448 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:20091938_ACC_A:598:0,277:76,76:433 +1 20092048 rs75141678 G GTC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:616:0,278:75,75:384 +1 20092547 rs72658519 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:588:0,261:91,327:496 +1 20092625 rs1883570 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,261:106,367:343 +1 20092944 rs2235655 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:664:0,293:105,377:544 +1 20093340 rs1737469 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:20093340_T_C:617:0,276:88,351:445 +1 20093343 rs72658521 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:20093340_T_C:616:0,271:92,350:445 +1 20094284 rs72658522 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:522:0,221:89,294:475 +1 20094500 rs2745253 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:20094500_A_G:585:0,256:79,335:402 +1 20094521 rs61768315 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:20094500_A_G:616:0,268:83,351:419 +1 20095073 rs113742402 C CT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,233:57,57:390 +1 20095181 rs61768316 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:649:0,290:104,376:539 +1 20095197 rs56060202 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:647:0,295:88,366:502 +1 20095325 rs58614793 ACT A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,291:0,0:374 +1 20097370 rs2235650 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:489:0,212:90,281:491 +1 20097520 rs72658529 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:577:0,269:79,324:446 +1 20097608 rs61768329 C A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:20097608_C_A:653:0,268:0,0:574 +1 20097611 rs1266436 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:20097608_C_A:656:0,270:0,0:609 +1 20097622 rs112151521 T TAAGTC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:651:0,267:0,0:560 +1 20097822 rs11551819 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,243:52,286:398 +1 20097941 rs10917536 G T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:555:0,234:33,249:373 +1 20098066 rs41310424 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:20098066_A_G:629:0,291:78,347:478 +1 20098079 rs41312010 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:20098066_A_G:590:0,278:65,323:430 +1 20098142 rs61768331 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:607:139,382:0,238:374 +1 20098299 rs61768332 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:527:1,218:77,294:386 +1 20098310 rs61768333 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:544:0,225:91,316:434 +1 20098830 rs1266435 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:420:0,168:70,70:394 +1 20098917 rs61768334 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:497:0,238:40,266:333 +1 20099109 rs1266434 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:553:0,237:86,314:451 +1 20099176 rs72658533 C T 50 PASS 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platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:596:0,268:71,334:402 +1 20099513 rs2294632 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:517:0,226:69,295:368 +1 20099555 rs56139479 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:611:0,270:77,347:412 +1 20099798 rs55751106 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,278:41,309:337 diff --git a/samples/custom_encoder/data/train.vcf b/samples/custom_encoder/data/train.vcf new file mode 100644 index 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+##bcftools_viewVersion=1.9+htslib-1.9 +##bcftools_viewCommand=view -r 1:10000000-20000000 GIAB_HG001_high_confidence.bcf; Date=Thu May 21 11:52:21 2020 +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT INTEGRATION +1 10000400 rs1237370 T A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:692:0,313:72,385:195 +1 10001235 rs137978085 TTTCG T 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=3;datasetnames=CGnormal,HiSeqPE300x,SolidSE75bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,290:59,59:278 +1 10001980 rs1220424 T A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:608:63,335:1,273:207 +1 10003320 rs1234694 G A 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:600:1,221:122,122:478 +1 10004347 rs61227057 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:762:163,165:206,222:1039 +1 10004882 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platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:603:1,261:74,331:229 +1 10013014 rs7516611 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:734:166,147:218,180:909 +1 10013044 . G GT 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:123,132:111,116:277 +1 10014386 rs7522568 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:503:0,234:41,269:230 +1 10014987 rs70998330 CA C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:403:28,205:0,177:130 +1 10016335 rs34011816 C A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:127,113:155,137:584 +1 10016929 rs10864440 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:507:0,219:54,273:237 +1 10018506 rs11580158 T G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:678:156,174:156,174:99 +1 10018560 rs6541071 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:716:1,321:67,387:251 +1 10018743 rs7518570 A G 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:434:0,157:69,69:329 +1 10020894 rs6673580 T G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:599:0,286:40,317:230 +1 10023034 rs7534615 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:602:0,265:76,341:281 +1 10023293 rs6541073 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:580:1,271:57,310:286 +1 10023391 rs6541074 C G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:746:0,344:77,403:334 +1 10024879 rs9943169 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:556:0,258:38,296:175 +1 10025247 rs12128632 G C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:10025247_G_C:446:0,217:0,217:99 +1 10025264 rs12128636 G A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:10025247_G_C:462:0,222:0,222:99 +1 10026670 rs34212244 CA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,300:0,0:160 +1 10027540 rs2890358 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:776:0,364:75,427:240 +1 10029913 rs6683452 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:704:0,328:89,383:548 +1 10031306 rs11121507 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:821:0,369:101,459:488 +1 10031436 rs11121508 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:733:0,343:44,387:320 +1 10033504 rs11804714 T G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,287:0,287:198 +1 10034855 rs6700407 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:636:0,304:30,334:271 +1 10035473 rs6657844 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:700:0,328:54,382:237 +1 10037468 rs6661806 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,283:70,338:406 +1 10039362 rs6694110 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:553:0,229:102,331:351 +1 10040509 rs12744387 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:10040509_A_G:477:0,220:0,0:301 +1 10040522 rs70998337 CA C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:10040509_A_G:434:18,228:0,0:276 +1 10041977 rs10779734 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:603:0,259:70,329:378 +1 10043142 rs11121510 G A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:485:0,233:0,0:259 +1 10043416 rs10779735 G A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:446:0,205:0,205:198 +1 10045152 rs4073852 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:676:0,286:111,397:460 +1 10045760 rs7525933 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:608:0,264:74,338:385 +1 10046214 rs4561042 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:747:0,352:85,406:528 +1 10046460 rs12136213 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:642:0,309:50,335:413 +1 10047515 rs4846185 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:538:0,250:36,286:177 +1 10049177 rs12140058 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,240:91,313:480 +1 10049698 rs4846186 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:641:0,282:83,359:434 +1 10051243 rs35937739 AT A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:436:1,190:1,190:99 +1 10052118 rs10746493 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:499:0,201:0,0:364 +1 10052214 rs7517360 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:519:0,218:62,275:265 +1 10052696 rs7517812 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,269:76,345:402 +1 10057670 rs6680076 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,247:36,280:198 +1 10057935 rs6697566 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,277:45,322:208 +1 10059375 rs6678023 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:551:4,241:52,289:305 +1 10060516 rs3003377 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:600:0,293:0,293:253 +1 10061867 rs112287943 G GTTTA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:420:0,216:0,0:160 +1 10066822 rs12022346 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:347:78,77:66,65:349 +1 10066824 rs61782885 G T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:359:90,76:78,64:250 +1 10068175 rs11578833 G A 50 PASS platforms=4;platformnames=Illumina,CG,Ion,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:804:124,142:160,168:975 +1 10078705 . G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:119,114:144,138:584 +1 10080376 rs72638951 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:131,118:168,138:700 +1 10082421 rs7414481 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:729:4,299:4,293:244 +1 10083709 rs12129123 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:567:121,129:121,129:294 +1 10088647 rs11585317 C T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:371:99,83:99,83:198 +1 10100891 rs6541076 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:619:0,277:55,332:323 +1 10106775 rs12406448 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:638:149,142:175,174:1079 +1 10122622 rs57037935 T TG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:546:0,246:25,25:330 +1 10125555 rs4265433 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,264:62,307:397 +1 10125993 rs72638953 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:178,144:158,123:535 +1 10128477 rs6678519 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,241:37,278:293 +1 10133684 rs11589489 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:469:105,104:125,132:575 +1 10144901 rs6541077 A G 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:620:128,369:0,241:485 +1 10152593 rs112961864 T TAAAAG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,223:73,73:369 +1 10155283 rs9430244 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:692:0,339:57,362:462 +1 10160254 rs10864442 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,277:60,337:341 +1 10163457 . CTTTA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/0:.:177:0,0,0:0,0,0:160 +1 10163461 . ATTTA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:177:0,0,0:0,0,0:160 +1 10171102 . G GAC 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:201:2,36,53:2,36,53:99 +1 10171102 . GACAC G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:201:2,36,53:2,36,53:99 +1 10180469 rs6664155 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:728:0,344:38,382:271 +1 10184001 . T G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:426:71,85:27,35:717 +1 10186360 . T TATAG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:419:111,99:0,0:241 +1 10189532 rs72638958 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:955:164,160:49,48:1464 +1 10190884 rs2295294 A T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_IonExomeTVC_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:681:0,305:75,354:470 +1 10191914 rs137951078 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:135,123:157,150:591 +1 10196699 rs1830501 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:716:1,299:128,423:515 +1 10202488 rs190923295 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:672:156,137:34,36:823 +1 10209557 rs6696978 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:783:0,375:82,420:534 +1 10212317 rs143984270 A AAAT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:340:2,157:0,0:160 +1 10214442 rs11121523 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:691:80,370:4,294:307 +1 10215207 rs12122985 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:463:106,98:121,126:600 +1 10235512 rs7540431 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:10235512_G_A:575:127,127:151,159:706 +1 10235520 rs7556506 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:10235512_G_A:568:120,126:151,159:905 +1 10235712 rs7354817 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:596:78,345:0,0:269 +1 10235946 rs2180184 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:699:151,144:202,194:1088 +1 10236039 rs6541080 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:142,139:168,154:640 +1 10236402 rs7418410 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:795:182,178:222,212:1152 +1 10237716 . A AAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:513:124,134:0,0:248 +1 10237960 rs12733312 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:671:161,151:184,171:789 +1 10241135 rs34197778 TA T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:127,139:112,131:209 +1 10241640 rs4846196 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:521:121,98:143,121:615 +1 10242231 rs6661326 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:694:161,167:188,182:457 +1 10242654 rs1556915 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:725:175,160:208,185:980 +1 10246129 rs2180185 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:144,133:163,164:1253 +1 10246471 rs6667639 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:557:129,113:155,153:1022 +1 10247143 rs1396 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:657:149,157:171,177:1192 +1 10247313 rs56221672 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:667:140,161:167,188:928 +1 10248851 rs1974293 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:147,133:156,168:313 +1 10251449 rs12122107 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:456:94,98:145,117:536 +1 10252185 rs61784566 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:99,87:127,115:883 +1 10252667 rs6670208 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:655:161,136:188,164:881 +1 10252778 rs6675036 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:652:143,153:167,171:527 +1 10253036 rs6660928 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:127,118:181,158:910 +1 10254880 rs12740371 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:658:154,141:188,171:774 +1 10258343 rs61784570 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:618:147,143:167,151:543 +1 10259425 rs113415448 T TTTG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:463:96,109:18,19:442 +1 10259917 rs61784572 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:121,133:149,144:697 +1 10260592 rs3903151 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:696:178,149:196,176:1137 +1 10262021 rs12116966 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:133,135:155,167:632 +1 10262479 rs7539679 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:494:84,122:103,135:451 +1 10262716 rs61784573 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:474:91,95:137,117:596 +1 10262846 rs61784574 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:360:78,79:0,0:481 +1 10263824 rs11121528 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:620:137,141:137,141:613 +1 10265518 rs12145227 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:443:102,113:87,89:465 +1 10265606 rs4348727 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:605:134,113:184,146:805 +1 10265998 rs34778142 C CT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:637:159,136:23,17:546 +1 10266671 rs12757820 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:833:206,183:237,211:601 +1 10267202 rs12728071 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:727:174,149:226,179:726 +1 10267390 rs35257796 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:612:142,101:0,0:698 +1 10268170 rs12117765 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:660:146,142:196,174:959 +1 10268852 rs61784579 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:752:178,162:209,199:1028 +1 10270386 rs3828081 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:643:159,135:188,161:599 +1 10270496 rs61784580 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:135,118:150,148:384 +1 10270715 rs140167753 GCC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:153,122:14,8:365 +1 10271540 rs35111552 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:522:120,116:148,139:740 +1 10272562 rs12133125 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:147,126:174,143:980 +1 10272966 . ATATATATA G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:283:0,0:0,0:139 +1 10273916 rs35830240 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:106,113:157,152:1057 +1 10274387 rs7520259 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:128,128:149,149:568 +1 10274441 rs35187325 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:132,118:153,146:563 +1 10274646 rs12124501 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:528:126,134:82,84:467 +1 10274695 rs34420285 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:558:114,98:114,98:700 +1 10274841 rs6699879 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:139,135:158,146:350 +1 10275418 rs2027328 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:120,139:142,155:515 +1 10275453 rs2027329 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:120,134:145,149:452 +1 10275592 rs2027330 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:714:164,138:212,180:1291 +1 10276718 rs2027331 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:10276718_C_T:545:132,120:156,140:1347 +1 10276719 rs2027332 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:10276718_C_T:544:132,119:156,139:1347 +1 10277357 rs11121531 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:434:68,84:42,30:895 +1 10277497 rs10864448 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:477:85,104:125,135:683 +1 10277858 rs35150619 T TC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:612:138,142:35,28:911 +1 10277898 rs11121532 G T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:688:150,145:69,45:1327 +1 10279308 rs61775872 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:592:122,140:27,21:551 +1 10279348 rs61775874 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:633:126,149:40,26:688 +1 10280429 rs147911011 A AATAG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:440:125,82:0,0:259 +1 10280455 rs138527580 TGATA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:433:117,92:0,0:259 +1 10281012 rs2105212 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:133,126:164,165:735 +1 10281445 rs61775885 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:129,109:168,141:711 +1 10282166 rs4846197 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:759:186,158:219,194:1372 +1 10282186 rs4846198 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:767:188,160:225,190:1344 +1 10283961 rs4846199 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:704:149,148:52,58:1383 +1 10284659 rs35766535 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:676:139,150:196,183:1060 +1 10284733 rs61775887 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:713:166,162:195,182:646 +1 10285403 rs72638984 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:727:140,173:190,227:1131 +1 10285447 rs6541084 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:723:187,143:223,165:795 +1 10285709 rs6541085 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:716:154,159:199,207:1450 +1 10286358 rs10492969 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:661:163,150:180,170:1040 +1 10287030 rs111659874 A AAAAC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:399:92,70:8,12:364 +1 10287312 rs7547513 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:515:131,96:161,116:595 +1 10288463 rs12133617 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:783:179,164:0,0:725 +1 10290126 rs55676616 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:552:122,134:27,20:538 +1 10290268 rs17396382 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:619:129,153:35,28:832 +1 10290421 rs17400510 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:799:160,174:214,220:1159 +1 10290640 rs7524908 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:583:125,140:144,173:562 +1 10291166 rs12129035 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:118,142:129,157:512 +1 10291874 rs12751375 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:769:178,164:169,151:617 +1 10292888 rs11121533 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:886:204,217:223,243:927 +1 10293565 rs11580854 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:715:166,161:202,192:756 +1 10294571 rs71583847 T TTTTG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:566:121,118:0,0:337 +1 10296331 . A AAACAAC 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:192:0,0:0,0:160 +1 10296364 . A C 50 PASS platforms=2;platformnames=Illumina,Solid;datasets=2;datasetnames=HiSeqPE300x,SolidSE75bp;callsets=2;callsetnames=HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,.,10,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:391:0,0:0,0:247 +1 10296452 rs12136376 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:766:173,183:205,195:910 +1 10296922 rs10864449 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:779:166,177:53,40:989 +1 10297230 rs1538557 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:772:195,171:226,178:827 +1 10298601 rs12127553 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:128,115:157,143:663 +1 10298764 rs146414281 AAACAAC A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:477:128,115:0,0:244 +1 10300032 rs12406776 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:701:181,183:158,159:597 +1 10300070 rs6685895 T C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:664:163,161:163,161:198 +1 10300119 rs34565762 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:710:194,186:0,0:937 +1 10302596 rs11584023 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:691:140,149:195,207:1296 +1 10302776 rs35850116 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:122,119:159,158:916 +1 10303942 rs11582123 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:819:204,177:235,201:996 +1 10304014 rs70997212 G GTTAA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:749:178,164:33,39:1019 +1 10305711 rs12755094 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:804:198,179:216,212:1379 +1 10305992 rs6696056 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:155,137:191,161:1254 +1 10306038 rs6700866 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:611:151,129:186,147:643 +1 10307295 rs4529713 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:148,158:166,163:566 +1 10307453 rs4240911 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:756:176,175:204,200:914 +1 10308248 rs146222604 TTTG T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:128,158:0,0:259 +1 10308545 rs12406943 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:695:156,155:202,181:995 +1 10308597 rs946504 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:715:153,172:180,214:1151 +1 10308631 rs946503 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:770:171,174:213,205:1242 +1 10309279 rs946502 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:682:159,143:194,184:1009 +1 10309580 rs946501 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:712:169,164:191,192:1159 +1 10310214 rs4846205 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:723:157,162:205,200:1313 +1 10310258 rs4846206 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:743:170,157:223,196:1105 +1 10311116 rs11121535 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:137,115:157,144:544 +1 10311389 rs70997213 CTT C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:466:89,126:69,113:391 +1 10311983 rs12407992 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:704:139,185:171,207:1181 +1 10312124 rs12409137 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:621:134,129:173,166:1003 +1 10312223 rs12408019 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:135,128:154,140:398 +1 10312444 rs70997214 T TTTGTTG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:406:99,104:0,0:248 +1 10313811 rs4846207 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:888:215,198:242,232:945 +1 10313839 rs4846208 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:906:218,206:248,234:1231 +1 10314657 rs58549151 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:138,121:175,155:913 +1 10314709 rs7522615 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:500:1,215:56,270:297 +1 10315102 rs12137456 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:635:163,136:171,147:500 +1 10316761 rs11121536 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:623:135,125:134,123:314 +1 10317445 rs12117635 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:381:68,68:21,17:612 +1 10317879 rs12136404 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:561:152,63:57,34:771 +1 10318010 rs10735517 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:626:0,286:59,338:371 +1 10318652 rs12402052 C G 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:926:211,199:231,239:1099 +1 10319049 rs4845930 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:785:184,178:216,205:1100 +1 10319247 rs1013952 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:745:159,170:199,181:673 +1 10319459 rs1013953 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:683:166,131:24,20:562 +1 10319622 rs4259656 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:119,124:141,147:590 +1 10322054 rs4846209 G A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:849:177,159:216,178:1275 +1 10322153 rs4846210 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:795:172,176:211,230:1340 +1 10322358 rs35837142 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:681:136,159:186,198:832 +1 10323339 rs12408430 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:10323339_T_A:526:139,63:44,47:691 +1 10323342 rs12408435 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:10323339_T_A:535:135,66:49,52:1047 +1 10323345 . T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:10323339_T_A:542:139,69:51,50:1288 +1 10323921 rs12757288 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:140,105:174,135:1082 +1 10323973 rs12737239 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:128,96:187,152:1341 +1 10325258 . TTTTA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:375:0,105,110:0,0,0:244 +1 10325258 . TTTTATTTATTTATTTA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:375:0,105,110:0,0,0:244 +1 10326963 rs9332414 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:856:196,191:234,229:1405 +1 10327407 rs12141246 A T 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:738:148,144:195,187:1281 +1 10327867 rs12141416 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:724:177,165:198,185:1096 +1 10328338 rs1339458 C T 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:949:169,147:192,166:1038 +1 10328683 rs60844640 CT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:446:111,109:86,101:150 +1 10329872 rs7520651 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:694:146,164:185,195:780 +1 10330581 rs74374877 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:722:189,138:225,170:1000 +1 10331010 rs4845931 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:673:132,128:177,176:1169 +1 10332102 rs17034643 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:741:181,167:205,189:1203 +1 10335315 rs6685773 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:778:0,337:124,455:556 +1 10335967 rs34424252 CT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:475:120,112:99,94:288 +1 10337133 rs1970379 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:10337133_A_G:597:166,139:140,113:598 +1 10337153 rs11576459 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:10337133_A_G:642:197,160:138,101:1405 +1 10339209 rs35347635 CAT C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:131,137:43,41:1153 +1 10339747 . CT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:144:0,7,39:0,7,39:99 +1 10339747 . CTTTTTTTT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:144:0,7,39:0,7,39:99 +1 10339822 rs12122029 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:480:80,96:111,130:995 +1 10340499 rs4846211 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:626:146,120:182,172:897 +1 10341516 rs12131785 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:763:165,170:216,212:1049 +1 10342352 rs3748575 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:705:149,157:192,209:1187 +1 10342629 rs3748576 G A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:830:138,134:150,157:1091 +1 10342975 rs10492971 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:685:155,146:193,190:1200 +1 10345325 rs12120042 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:763:190,159:233,184:1295 +1 10345772 rs12120191 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:746:170,169:203,202:1023 +1 10346203 rs4845932 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:10346203_C_T:671:132,174:159,203:721 +1 10346211 rs4845933 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:10346203_C_T:643:128,168:154,192:600 +1 10346810 rs746881 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:714:158,168:188,196:943 +1 10348042 rs912963 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:692:163,144:198,189:1174 +1 10348712 rs912962 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:624:156,141:174,146:1083 +1 10348765 rs5772406 C CTTTT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:119,121:36,48:684 +1 10350178 rs7516878 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:680:144,162:189,177:663 +1 10350438 rs7553228 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:782:191,182:204,200:793 +1 10350581 rs7524693 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:782:157,190:199,224:869 +1 10350849 rs12125535 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:605:130,125:34,24:697 +1 10351767 rs34360352 CA C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:475:112,132:87,118:306 +1 10353112 rs10492972 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:714:197,189:0,0:1173 +1 10354271 rs7520935 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:776:236,215:162,167:1055 +1 10354601 rs2039778 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:703:156,146:213,183:891 +1 10355834 rs3753037 C T 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:741:174,140:216,175:1218 +1 10356028 rs34437412 T TG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:724:169,154:38,41:884 +1 10356562 rs2275424 C A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:816:159,183:205,213:1110 +1 10356848 rs912961 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:771:180,187:200,203:645 +1 10357406 rs3748577 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:656:147,150:174,186:1075 +1 10358065 rs72640309 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:724:151,173:183,218:1354 +1 10359299 rs5772407 G GA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:700:151,155:48,40:1117 +1 10359944 rs12130220 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:741:178,170:198,193:894 +1 10360092 rs11121537 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:688:137,184:149,205:364 +1 10360295 . A AAATAATAATAAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:464:114,119:0,0:246 +1 10361679 rs34215045 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:726:170,160:199,187:575 +1 10363050 rs3833523 C CCA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:745:157,164:51,52:1243 +1 10365955 rs72640311 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:852:196,198:225,232:1273 +1 10366487 rs8019 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:800:180,171:235,221:1392 +1 10366692 rs4623 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:580:126,132:160,156:1008 +1 10367424 rs2004034 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:740:175,148:222,196:1065 +1 10367591 rs1065828 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:136,146:164,179:753 +1 10369417 rs55792417 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:725:153,165:190,213:1253 +1 10370312 rs4846212 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:629:143,151:175,159:790 +1 10371854 rs17410217 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:661:135,162:169,186:1124 +1 10371987 rs34225619 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:618:123,137:166,187:1229 +1 10372110 rs12753426 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:453:108,111:106,128:614 +1 10372180 rs36109286 CTGA C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:491:109,114:30,23:640 +1 10373606 rs70997220 A ATT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:320:49,53:49,53:99 +1 10375179 rs7553935 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:580:124,110:41,26:806 +1 10376281 rs34533851 AC A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:688:167,151:36,21:720 +1 10376803 rs12734068 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:707:171,152:206,168:638 +1 10378428 rs12132134 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:727:164,176:191,195:1162 +1 10378914 rs1536263 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:838:193,185:239,214:953 +1 10380773 rs58385105 C CTTATTTAT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:633:158,143:0,0:302 +1 10380877 rs71583855 T TGCCTCA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:677:166,157:0,0:296 +1 10384176 rs3831405 C CTTGAAA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:126,130:38,60:1262 +1 10384439 rs17401924 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:760:179,163:209,207:1025 +1 10385471 rs17401966 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:806:178,195:207,226:1052 +1 10385664 rs2182326 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:842:193,180:235,235:1283 +1 10387486 rs11121539 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:106,109:147,140:705 +1 10387704 rs4333852 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:795:188,181:218,201:986 +1 10387788 rs4475756 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:713:159,164:188,198:1223 +1 10388620 rs12137880 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:838:213,166:257,203:1277 +1 10390583 rs59135803 A ATAAAT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:694:139,162:28,48:893 +1 10390696 rs12139981 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:648:150,138:184,172:1171 +1 10391536 rs12734551 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:792:173,181:214,227:1403 +1 10391886 rs17410793 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:744:163,196:180,211:882 +1 10392034 rs35412726 T TA 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:847:182,194:52,41:950 +1 10393614 rs35388505 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:487:108,99:131,120:591 +1 10393626 rs11121541 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:490:107,99:137,116:547 +1 10393730 rs61778376 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:518:120,117:120,117:365 +1 10394536 rs2276100 C G 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:797:163,142:183,154:1024 +1 10395134 rs12722830 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:150,125:179,158:1017 +1 10395530 rs12409933 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:589:127,132:159,165:755 +1 10395683 rs10864452 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:705:144,152:144,152:403 +1 10398985 rs10492973 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:700:160,147:202,188:1245 +1 10399178 rs4846213 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:848:197,198:226,231:1299 +1 10400602 rs1555849 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:704:170,141:214,180:956 +1 10400990 rs1556917 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:719:172,169:183,191:927 +1 10402009 rs33942183 CA C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:369:74,87:67,73:159 +1 10402785 rs6541089 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:780:194,170:225,193:876 +1 10402842 rs6541090 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:854:244,235:191,183:1255 +1 10403482 rs1556916 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:764:186,159:224,192:985 +1 10406643 rs11121544 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:504:100,90:27,27:708 +1 10407169 rs10864453 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:780:207,148:242,179:1075 +1 10410542 rs35516775 T TG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:128,145:27,17:518 +1 10410916 rs12119477 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:531:142,103:0,0:331 +1 10411211 rs11121545 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:621:124,115:50,35:958 +1 10413123 rs1467653 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:712:211,207:143,149:1296 +1 10414432 rs11576866 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:841:192,204:226,224:914 +1 10414470 rs17402762 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:791:163,192:211,232:1276 +1 10414645 rs17034821 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:935:216,212:256,258:1145 +1 10415912 rs2185252 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:819:202,193:212,213:1032 +1 10416956 rs80163509 CTAAA C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:10416956_CTAAA_C:393:117,90:0,0:244 +1 10416993 rs12725210 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:10416956_CTAAA_C:675:215,181:0,0:1039 +1 10417099 rs6541091 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:613:61,342:0,281:380 +1 10418054 rs12403465 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:126,144:155,170:643 +1 10418815 rs7546364 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:10418815_G_A:624:117,130:150,171:1054 +1 10418826 rs7546368 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:10418815_G_A:660:126,138:161,185:1156 +1 10419663 rs12738317 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:816:189,185:221,225:670 +1 10420047 rs11585760 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:639:150,141:179,164:634 +1 10420918 rs3748578 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:827:144,147:171,173:1098 +1 10420937 rs3748579 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:808:145,142:167,161:1234 +1 10422958 rs11578788 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:137,142:181,172:723 +1 10423988 rs12403443 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:728:171,179:196,179:690 +1 10424559 rs34869052 GC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:125,150:42,23:590 +1 10424801 rs61778399 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:539:137,93:33,25:570 +1 10424836 rs61326491 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:474:129,89:19,19:567 +1 10425063 rs57088720 C CAA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:352:83,62:83,62:198 +1 10425117 rs34161257 AT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:111,117:38,26:616 +1 10426417 rs12128374 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:593:136,136:166,151:731 +1 10426474 rs61778401 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:479:131,129:110,111:549 +1 10427459 rs34636442 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:728:198,195:159,174:480 +1 10427496 rs61778402 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:721:160,171:182,188:513 +1 10427659 rs61778403 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:652:145,153:159,168:449 +1 10428452 rs12130563 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:625:132,156:163,178:722 +1 10428952 rs12131441 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:137,122:172,177:1195 +1 10429223 rs1188494 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:699:0,313:103,390:474 +1 10429971 rs58697740 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:126,98:159,129:783 +1 10430147 rs2148152 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:133,128:154,152:616 +1 10430479 rs12132635 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:598:143,165:130,156:379 +1 10430630 rs34836490 A AAAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:450:113,105:0,0:245 +1 10431158 rs17411502 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:657:156,160:174,175:806 +1 10432720 rs184097020 A C 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:10432720_A_C:461:87,97:19,18:587 +1 10432721 rs188880781 G T 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:10432720_A_C:459:87,95:19,18:587 +1 10432879 rs61778404 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:643:147,164:162,174:392 +1 10435170 rs11121551 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:612:117,145:151,192:1026 +1 10435324 rs11121552 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:755:142,141:191,176:940 +1 10436892 rs146112447 A AAC 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:307:78,68:0,0:150 +1 10438006 rs2847347 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:633:189,184:117,129:1083 +1 10438687 rs1536262 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:151,125:191,165:909 +1 10438892 rs1002076 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:676:161,131:202,172:962 +1 10440556 rs1138791 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:135,140:152,173:509 +1 10441664 rs3748581 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:733:166,171:192,201:950 +1 10442392 rs11576654 C G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:444:92,82:17,15:515 +1 10442856 rs11121555 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:134,118:174,141:940 +1 10442867 rs11121556 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:131,124:176,148:946 +1 10442903 rs58053556 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:596:136,124:169,158:1047 +1 10442926 rs60743860 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:596:130,125:174,160:1030 +1 10443590 rs34362834 A AC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:492:101,106:39,37:801 +1 10443867 rs11585794 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:139,143:174,173:904 +1 10444202 rs35811280 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:129,111:168,167:731 +1 10446251 rs56258061 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:490:97,94:122,125:717 +1 10446596 rs11587309 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:503:104,111:48,40:1091 +1 10446921 rs70997225 C CT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:451:0,193:70,70:438 +1 10447622 rs11587854 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:157,141:104,103:873 +1 10447792 rs4846216 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:728:175,152:214,187:1015 +1 10448260 rs11121557 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:755:168,175:209,204:1051 +1 10448999 rs11587495 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:123,140:156,169:742 +1 10451582 rs11578694 C G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:465:100,78:43,39:1042 +1 10453230 rs11586842 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:490:108,105:133,127:599 +1 10454714 rs12141201 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:761:177,187:204,200:777 +1 10454773 rs6682868 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:809:182,176:223,220:1091 +1 10457540 rs12409754 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:736:166,179:197,195:803 +1 10458378 rs6674843 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:750:175,157:219,192:1162 +1 10458480 rs6674949 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:664:143,137:190,178:1323 +1 10459779 rs3737155 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:670:153,133:188,183:1047 +1 10460485 rs1049887 T C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:506:105,106:139,143:975 +1 10461107 rs11121560 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:655:140,129:209,177:987 +1 10461177 rs11121561 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:645:155,134:178,170:655 +1 10462088 rs2847341 T A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:508:147,92:0,0:198 +1 10462875 rs11121563 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:682:174,137:204,169:683 +1 10463572 rs3762288 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:112,84:162,116:848 +1 10463888 rs4846219 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:708:180,153:192,182:1252 +1 10465299 rs35716098 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:136,128:155,142:480 +1 10466040 rs35859381 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:10466040_G_A:589:139,129:168,150:612 +1 10466046 rs34075302 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:10466040_G_A:564:129,125:165,143:579 +1 10466111 rs34045426 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:135,130:174,164:861 +1 10467074 rs6541094 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:142,152:167,179:596 +1 10468946 rs4845934 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:585:138,125:167,153:782 +1 10469641 rs12118323 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:424:77,87:17,39:466 +1 10470846 rs11579365 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:733:165,186:185,193:676 +1 10471789 rs2236678 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:660:143,162:175,188:1111 +1 10472026 rs4846221 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:740:151,175:201,218:1450 +1 10472848 rs11121566 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:134,109:153,140:858 +1 10473196 rs2229687 C T 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:765:142,136:165,168:1219 +1 10474430 rs35759975 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:624:123,143:171,182:1071 +1 10474457 rs58014725 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:611:129,142:171,163:533 +1 10475011 rs12746471 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:119,138:166,167:716 +1 10475120 rs11576384 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:110,109:133,153:604 +1 10475146 rs34918542 T TA 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:404:99,99:80,81:314 +1 10478139 rs35099776 CTT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:134,128:73,30:811 +1 10478586 rs3762287 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:659:144,156:179,180:641 +1 10478727 rs3762286 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:512:99,120:129,137:517 +1 10479635 rs2298570 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:503:113,104:156,132:716 +1 10479678 rs1889309 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:635:130,109:157,148:1127 +1 10480866 rs12755363 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:645:145,143:182,173:1223 +1 10480983 rs12402723 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:133,123:172,151:583 +1 10481210 rs12759696 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:642:198,178:134,130:1125 +1 10481475 rs9651117 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:145,132:187,158:902 +1 10484416 rs663364 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:136,122:176,158:1313 +1 10484976 rs34776634 C CA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:699:0,329:56,56:404 +1 10485019 rs2483679 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:750:0,341:86,86:543 +1 10485177 rs666583 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,256:65,321:365 +1 10485313 rs667366 C T 50 PASS platforms=3;platformnames=CG,10X,Illumina;datasets=3;datasetnames=CGnormal,10XChromium,HiSeqPE300x;callsets=4;callsetnames=CGnormal,10XGATKhaplo,HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:460:0,187:52,52:337 +1 10485609 rs10436981 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,254:60,314:365 +1 10485858 rs517241 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:518:0,248:0,248:249 +1 10486166 rs140443539 C T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:506:0,259:0,259:198 +1 10486195 rs681495 T C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,269:0,269:198 +1 10486282 rs520964 G A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:541:0,273:0,273:198 +1 10486340 . G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:582:142,149:138,141:246 +1 10486423 rs522029 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:557:14,286:0,272:210 +1 10486597 rs585703 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,250:0,250:253 +1 10486657 rs586096 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:10486657_T_C:524:0,252:0,252:257 +1 10486681 rs579398 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:10486657_T_C:569:0,260:0,260:255 +1 10487408 rs475549 G A 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:584:46,320:0,0:304 +1 10487828 rs70997231 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,244:66,66:431 +1 10488314 rs505141 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,272:61,310:410 +1 10488374 rs34518183 A ATTCT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:597:0,254:109,109:322 +1 10488555 rs528713 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,245:84,320:434 +1 10488788 rs632690 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:604:1,277:46,319:314 +1 10489142 rs634358 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:680:0,323:60,370:340 +1 10490111 rs649101 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:673:0,314:82,371:449 +1 10490285 rs649639 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:486:0,225:46,269:211 +1 10490759 rs35995075 TTGGCTTAAC T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:454:0,221:24,24:324 +1 10490789 rs6662684 G C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:500:0,232:33,33:341 +1 10490881 rs481571 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:497:0,228:35,263:291 +1 10491895 rs5772409 A AGCGAGACTCC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:403:0,160:0,0:292 +1 10492168 rs678850 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:641:0,292:59,351:351 +1 10492405 rs519472 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,243:46,289:321 +1 10492672 rs70997232 A AC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:10492672_A_AC:597:0,270:46,46:370 +1 10492684 rs583515 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:10492672_A_AC:602:0,288:39,39:359 +1 10492715 rs522280 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:579:0,275:49,49:381 +1 10492940 rs524150 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:600:0,267:88,337:496 +1 10493295 rs586223 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:602:0,260:86,346:420 +1 10493415 rs597441 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,262:99,351:423 +1 10495508 rs1307485 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:452:0,207:66,254:427 +1 10496038 rs141993546 AT A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:375:0,171:0,171:99 +1 10496623 rs1760664 C T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:436:0,203:0,0:245 +1 10496717 rs35138970 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:504:41,250:0,0:364 +1 10496854 rs2483684 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:607:0,267:33,288:314 +1 10496943 rs643399 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:10496943_T_A:638:0,304:75,369:413 +1 10496944 rs643400 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:10496943_T_A:636:0,302:75,368:413 +1 10497220 . C CT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:123,140:18,11:422 +1 10497911 rs1760666 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:10497911_G_A:495:0,213:33,246:291 +1 10497915 rs1750349 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:10497911_G_A:503:0,219:35,254:275 +1 10500936 rs35315955 T TA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:663:0,311:47,47:365 +1 10502307 rs33919161 AT A 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1/1:.:536:0,269:0,0:271 +1 10502710 rs2847337 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:720:0,344:66,385:436 +1 10503641 rs10864456 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:442:0,184:0,184:262 +1 10507236 rs1307489 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:632:0,300:59,334:410 +1 10508023 rs61450086 T TGA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:578:0,268:46,46:356 +1 10508136 rs3828044 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:745:0,345:71,405:388 +1 10508679 rs1307490 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:10508679_T_C:728:0,346:58,397:354 +1 10508699 rs1307491 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:10508679_T_C:681:0,325:50,373:327 +1 10509011 rs1307492 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:603:0,273:60,331:349 +1 10509409 rs1307493 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:600:0,276:52,328:290 +1 10509703 rs1307494 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,276:74,328:460 +1 10510682 rs1308520 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:568:0,263:57,305:350 +1 10511589 rs666103 T C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:664:0,273:72,337:434 +1 10512056 rs1307497 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:790:0,369:68,427:401 +1 10512509 rs6540931 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:484:0,189:50,235:348 +1 10513731 rs34620741 C CT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,270:61,61:433 +1 10514046 rs5772412 T TG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:451:0,208:34,34:353 +1 10514330 rs12745969 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:396:0,144:65,209:375 +1 10515414 rs2483686 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:632:0,280:63,339:368 +1 10516290 rs12134590 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:596:0,274:81,331:468 +1 10516393 rs944973 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:528:0,244:57,289:397 +1 10517273 rs11121572 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,298:50,343:346 +1 10517422 rs2781227 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,248:89,327:330 +1 10517944 rs55801511 CTG C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:588:0,273:57,57:419 +1 10519090 rs7537164 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:542:0,222:78,300:373 +1 10522190 rs10864457 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:561:1,236:80,315:395 +1 10522276 rs34372628 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:10522276_C_T:588:0,259:72,331:383 +1 10522289 rs12065251 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:10522276_C_T:590:0,264:66,326:398 +1 10523930 rs12729844 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:547:0,253:42,295:311 +1 10524238 . C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:111,148:125,162:410 +1 10524432 rs2027087 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:639:2,293:54,341:334 +1 10524467 rs6667629 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:700:0,307:105,404:521 +1 10525459 rs34389737 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,247:55,55:374 +1 10525841 rs34132699 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:10525841_T_C:497:0,242:0,236:290 +1 10525860 rs1188530 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:10525841_T_C:487:0,227:0,224:273 +1 10530773 rs4611017 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:489:0,198:90,288:436 +1 10530787 rs11799743 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:501:0,199:104,298:495 +1 10534915 rs72640366 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:122,150:152,170:546 +1 10535595 rs56053147 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:134,102:157,133:562 +1 10539203 rs606240 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:585:0,274:43,317:316 +1 10540898 rs35200732 TTC T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:538:135,126:0,0:249 +1 10542584 rs12124486 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,244:62,306:338 +1 10545134 rs56395143 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:588:164,123:168,133:799 +1 10550507 rs72640379 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:153,137:176,145:558 +1 10559502 rs56262705 AT A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:286:3,98:3,98:99 +1 10561282 rs589400 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:711:0,347:39,367:363 +1 10561463 rs2483676 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,280:52,332:352 +1 10561923 rs1632108 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:686:1,325:48,370:301 +1 10561954 rs683864 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:671:0,319:46,365:326 +1 10562853 rs34497048 CTT C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:377:19,184:0,162:128 +1 10563492 rs2506901 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,263:61,304:423 +1 10563681 rs2506902 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:706:0,332:87,381:524 +1 10563717 rs2781230 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:616:0,281:64,330:396 +1 10564829 rs6668910 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:657:192,202:124,130:331 +1 10564962 rs2506903 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:498:0,222:51,273:304 +1 10565372 rs2480787 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:538:1,243:62,296:361 +1 10565634 rs2506904 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:706:0,318:71,387:404 +1 10566095 rs2506878 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:637:1,291:69,354:338 +1 10566148 rs7543322 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:620:1,292:50,323:360 +1 10566215 rs616488 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:667:0,321:61,350:438 +1 10566272 rs616402 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:643:0,298:78,343:513 +1 10566522 rs617728 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,237:78,78:477 +1 10566668 rs2506879 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:739:0,336:105,414:567 +1 10567658 rs2480786 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:652:0,297:85,364:472 +1 10568277 rs2506880 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:642:104,372:0,268:211 +1 10569258 rs2480785 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:516:0,225:51,276:298 +1 10571142 rs59003011 GCAGAGCT G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,278:87,87:453 +1 10572967 rs12129512 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:643:0,274:103,375:469 +1 10574213 rs71583876 CTG C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:279:2,129:2,129:99 +1 10579545 rs1411402 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:576:0,239:116,334:586 +1 10579650 rs2506884 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:673:0,304:88,377:494 +1 10580891 rs2483677 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:731:0,340:82,401:481 +1 10581658 rs2056417 G A 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:676:0,360:0,332:282 +1 10582047 rs2483678 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:629:0,284:93,356:513 +1 10583531 rs2506886 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:654:0,292:100,376:514 +1 10583882 rs138018715 TAA T 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:383:0,150:0,150:99 +1 10584672 rs2506887 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:719:0,340:69,393:426 +1 10584738 rs2506888 A T 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:523:0,271:0,0:282 +1 10585046 rs2480789 C T 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:703:95,406:0,304:484 +1 10586433 rs2480783 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:622:0,278:68,342:384 +1 10586801 rs2988399 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,263:52,315:336 +1 10587794 rs2039176 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,281:0,281:231 +1 10587841 rs2039175 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:617:1,283:1,281:335 +1 10589836 rs7548453 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:783:175,172:220,218:1452 +1 10593541 rs2480781 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:789:0,362:95,432:515 +1 10594790 rs2026792 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:611:143,131:36,32:845 +1 10595211 rs2480780 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:676:0,296:109,391:544 +1 10595833 rs34318995 C CGT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:366:77,91:8,14:346 +1 10596022 rs2506889 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:120,113:134,141:1137 +1 10596086 rs56053695 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:126,147:130,163:848 +1 10596341 rs12375 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:659:134,144:161,182:1271 +1 10596388 rs2480779 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:596:0,259:94,346:450 +1 10596530 rs2480778 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:647:0,275:116,381:524 +1 10597024 rs17035189 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:627:135,147:168,181:1090 +1 10597053 rs2506891 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:617:0,277:94,348:485 +1 10597551 rs2480777 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:706:148,162:191,203:1227 +1 10597992 rs35357504 T TG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:725:0,322:109,109:561 +1 10598216 rs2506892 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:573:128,131:49,38:996 +1 10599213 rs2506893 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,273:56,307:399 +1 10599643 rs78653043 CAT C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:578:0,260:73,73:467 +1 10599842 rs2506894 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:611:0,262:106,343:545 +1 10600222 rs72641408 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:672:155,147:183,179:1021 +1 10600605 rs56172605 TTG T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:713:176,156:43,24:776 +1 10600658 rs59541219 G GA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:149,140:17,22:425 +1 10602576 rs2506895 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:646:0,289:66,66:407 +1 10602758 rs2988398 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:619:0,269:86,355:434 +1 10603716 rs2506896 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:585:148,112:177,135:1031 +1 10603892 rs2506897 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,264:69,323:412 +1 10604539 rs2506898 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,267:83,336:426 +1 10605796 rs11580264 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:794:168,182:218,231:1206 +1 10606003 rs2480776 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:601:1,280:50,325:327 +1 10606787 rs55913143 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:144,150:0,0:898 +1 10606996 rs2480775 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:688:159,158:179,185:971 +1 10607228 rs2480774 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:656:0,304:74,359:444 +1 10607394 rs710130 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:668:179,125:221,145:812 +1 10607451 rs944191 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:700:133,176:165,223:1222 +1 10607543 rs72641412 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:140,138:167,172:896 +1 10608583 rs12117392 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:10608583_T_C:846:192,203:229,224:947 +1 10608596 rs4846230 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:10608583_T_C:841:195,198:234,216:784 +1 10609090 rs2480773 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:794:182,186:213,214:1199 +1 10609395 rs12128630 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:845:205,181:247,221:1519 +1 10609460 rs2480772 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:845:185,202:219,246:1171 +1 10609505 rs12120962 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:849:181,199:231,239:1342 +1 10610129 rs2183377 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:675:159,148:194,176:1177 +1 10610876 rs2506900 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:772:175,186:205,209:1201 +1 10611403 rs6688558 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:667:142,154:195,183:1167 +1 10611417 rs6696891 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:638:144,147:184,172:1069 +1 10611594 rs2480771 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:126,138:149,174:1019 +1 10612075 rs6700023 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:643:144,138:166,176:633 +1 10612360 rs4845935 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,246:75,321:408 +1 10612636 rs4846231 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:727:165,163:202,189:1028 +1 10612810 rs4846232 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:124,119:152,157:889 +1 10613167 rs7555790 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:618:130,132:64,60:1571 +1 10613344 rs10157111 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:129,129:157,184:1078 +1 10613497 rs10157119 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:504:113,100:141,148:615 +1 10613560 rs10864463 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:128,112:185,150:1211 +1 10613660 rs12127400 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:642:152,133:49,55:1432 +1 10613697 rs112766521 GCTTCTCCCTC G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:146,128:52,35:1206 +1 10614472 rs12562838 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,250:54,288:374 +1 10615189 rs10779739 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:117,113:140,138:706 +1 10615699 . A AGT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:295:0,69,74:0,0,0:259 +1 10615699 . A AGTGT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:295:0,69,74:0,0,0:259 +1 10615775 rs11121584 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:110,111:158,146:975 +1 10616228 rs4846233 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:116,116:172,149:822 +1 10616484 rs4240915 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:598:129,119:181,167:1219 +1 10617272 rs9660006 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:738:164,170:184,216:1363 +1 10617359 rs9660218 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:701:144,169:183,207:901 +1 10617591 rs11121585 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:134,134:168,157:520 +1 10617906 rs12121311 T A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:543:134,143:98,122:488 +1 10618055 rs11121586 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:664:0,310:67,361:410 +1 10618366 rs7555010 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:686:0,312:87,382:466 +1 10618991 rs11121588 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:10618991_A_T:691:154,161:200,186:1020 +1 10618994 rs11121589 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:10618991_A_T:701:156,160:207,190:1073 +1 10619965 rs6658073 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:129,130:158,171:1002 +1 10620108 rs6700881 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:10620108_T_C:595:0,239:104,343:502 +1 10620123 rs6700886 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:10620108_T_C:603:144,188:114,128:777 +1 10620239 rs61777207 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:522:132,106:155,123:492 +1 10620270 rs10746495 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:550:111,122:150,162:953 +1 10620701 rs9659854 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:490:0,194:39,39:349 +1 10620719 rs9661121 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:473:77,101:24,21:609 +1 10621050 rs58788814 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:104,105:135,142:836 +1 10621150 rs9662101 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:641:0,280:110,371:513 +1 10621278 rs55646522 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:703:163,157:207,181:1044 +1 10621363 rs7519424 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:149,144:167,154:737 +1 10622374 rs7512467 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:744:181,157:211,190:1049 +1 10622674 rs10779741 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:754:1,357:71,399:463 +1 10622803 rs10779742 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:726:1,333:90,400:462 +1 10622915 rs35409029 T C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:633:161,145:161,145:198 +1 10623239 rs12750901 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:488:97,114:114,132:483 +1 10623841 rs11121592 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:621:0,251:75,326:369 +1 10623918 rs10864464 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:647:0,296:36,36:356 +1 10624057 rs59001371 CAT C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:752:167,177:44,22:770 +1 10624240 rs76108052 C CTT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:667:0,319:60,60:383 +1 10624315 rs6663688 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:719:169,179:188,188:867 +1 10624468 rs6663898 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:659:209,180:134,114:1566 +1 10625495 rs4845936 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:133,148:149,156:470 +1 10626287 rs11121593 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:698:173,144:207,172:869 +1 10626637 rs7527873 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:691:0,315:58,373:348 +1 10626922 rs11121594 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:785:177,167:223,211:1464 +1 10627542 rs12033275 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:739:156,161:211,212:1188 +1 10627619 rs6661757 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:146,158:176,191:770 +1 10627701 rs114425920 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:136,129:184,183:1096 +1 10628882 rs10779743 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:737:173,162:194,195:623 +1 10629133 rs10779744 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:735:177,149:222,187:888 +1 10629562 rs12565494 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:724:182,162:199,189:1125 +1 10629847 rs4593832 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:749:0,352:67,401:428 +1 10630300 rs6540936 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:760:0,353:63,405:374 +1 10630966 rs34230252 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:448:93,64:124,83:578 +1 10631237 rs7512495 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:621:133,139:177,168:1063 +1 10631455 rs7512680 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:531:66,303:0,228:431 +1 10631703 . TA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:486:113,75:37,35:785 +1 10631739 rs7534954 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:507:86,112:46,48:1048 +1 10631811 rs7524790 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:10631811_A_C:590:119,136:165,178:1106 +1 10631815 rs12133103 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:10631811_A_C:593:118,137:166,180:1154 +1 10632360 rs4846236 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:790:0,368:94,443:492 +1 10632615 rs72641424 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:773:235,201:192,145:856 +1 10632647 rs4846237 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:728:141,186:186,219:736 +1 10632737 rs36116008 GC G 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:111,138:39,31:541 +1 10633245 rs6687430 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:743:1,355:73,395:392 +1 10633273 rs6687502 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:700:173,154:199,176:830 +1 10633421 rs6676491 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:687:158,173:165,185:544 +1 10633453 rs6687622 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:700:158,158:180,191:916 +1 10633543 rs6664134 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:772:180,174:210,210:1275 +1 10633651 rs12129678 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:802:179,195:209,224:1137 +1 10634171 rs7536149 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:10634171_T_C:730:153,170:194,211:927 +1 10634195 rs72641427 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|0:10634171_T_C:799:188,166:221,220:1337 +1 10635121 rs10864465 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:698:161,138:212,183:1143 +1 10635328 rs12139169 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:880:194,214:225,246:1118 +1 10635362 rs11121596 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:884:236,172:274,200:1196 +1 10636443 rs6540937 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:10636443_G_A:784:179,186:218,214:1247 +1 10636459 rs6540938 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:10636443_G_A:800:184,189:208,224:1015 +1 10636853 rs11121597 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:509:68,95:48,52:1240 +1 10636955 rs4617401 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:486:109,96:138,131:783 +1 10637246 rs5772421 C CAGG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:496:127,90:22,18:497 +1 10637841 rs59163005 T TA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:384:84,86:20,17:449 +1 10638741 rs2128417 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:766:2,365:53,53:396 +1 10639107 rs113736844 TTAAAG T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:682:178,146:35,29:1088 +1 10640333 rs4579762 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:673:46,359:0,313:324 +1 10640438 rs2086650 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:583:115,124:166,183:1163 +1 10640933 rs747124 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:756:178,165:214,197:1024 +1 10641803 rs201651535 TTAATTTA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:777:207,195:0,0:259 +1 10642068 rs71583885 GATTAA G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:688:33,377:0,0:396 +1 10642793 rs7552996 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:711:0,293:0,293:270 +1 10643674 rs10779745 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:685:0,310:97,97:569 +1 10643724 rs55964771 T TAAGTC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:663:0,296:99,99:439 +1 10643829 rs12045923 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:630:1,279:94,356:450 +1 10645622 rs4846238 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:712:0,330:105,399:593 +1 10645821 rs4846239 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:597:0,267:79,342:424 +1 10648805 rs10864467 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:670:0,312:92,376:527 +1 10649618 rs61300584 TTTTG T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:354:0,181:0,0:259 +1 10650344 rs11577757 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:673:147,141:192,189:1072 +1 10650382 rs2387144 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:728:0,340:87,398:411 +1 10650509 rs2387145 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:763:1,351:78,414:422 +1 10651148 rs72641432 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:648:145,141:187,176:963 +1 10651460 rs6540940 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:638:0,287:76,352:397 +1 10651692 rs61635531 C CTGTG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:301:81,60:81,60:99 +1 10651912 rs284275 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:514:0,216:81,297:330 +1 10652082 rs57968571 CTTTG C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:589:0,270:69,69:450 +1 10652605 rs6668131 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:673:0,321:60,362:417 +1 10652977 rs284273 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:584:0,245:103,335:424 +1 10654369 rs284271 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:625:0,288:63,339:390 +1 10654886 rs5772422 C CA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,278:67,67:433 +1 10655919 rs5772423 A AG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:10655919_A_AG:785:1,352:101,101:519 +1 10655936 rs284269 C A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:10655919_A_AG:792:0,365:88,88:508 +1 10656335 rs6657808 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:684:138,163:188,193:1269 +1 10666517 rs284281 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:576:0,269:69,321:426 +1 10666735 rs11121599 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:705:0,310:111,401:568 +1 10668379 rs12722934 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:774:0,355:86,428:449 +1 10669098 rs6666075 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:633:0,302:67,349:426 +1 10671323 rs517344 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:449:0,163:53,53:388 +1 10673094 rs3790630 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,294:80,352:486 +1 10673194 rs479407 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:701:0,315:96,395:482 +1 10678655 rs284236 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,248:37,285:291 +1 10682244 rs284305 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:500:1,229:49,266:324 +1 10690948 rs17035482 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:619:133,150:26,34:660 +1 10696229 rs72641441 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:136,131:162,153:655 +1 10697878 rs199867187 GA G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:667:190,169:155,140:504 +1 10702266 rs117131266 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:290:39,44:28,18:473 +1 10702307 rs376062894 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:356:62,50:20,21:489 +1 10702814 rs35619052 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:512:106,121:125,147:527 +1 10704888 rs4845940 G C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:617:126,107:142,126:701 +1 10705110 rs4845941 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:123,137:157,160:715 +1 10705486 rs284245 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:492:126,94:156,110:449 +1 10705880 rs284243 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:578:120,119:176,162:1348 +1 10708142 rs778228 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_IonExomeTVC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:613:132,122:168,153:788 +1 10710849 rs3215814 G GC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Ion;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,IonExome;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:125,132:19,12:444 +1 10712089 rs284296 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:10712089_A_G:560:128,118:0,0:467 +1 10712097 rs284295 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:10712089_A_G:523:118,105:0,0:411 +1 10712198 rs3214955 C CAT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:116,132:38,32:836 +1 10713765 rs284294 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:649:0,249:79,328:435 +1 10714330 rs35746667 A AC 50 PASS platforms=4;platformnames=CG,Illumina,Ion,10X;datasets=4;datasetnames=CGnormal,HiSeqPE300x,IonExome,10XChromium;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:659:94,133:25,26:811 +1 10714436 rs35604552 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:565:117,131:160,151:658 +1 10714911 rs2242287 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:576:130,124:32,31:695 +1 10717359 rs4845942 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:436:90,105:104,121:575 +1 10718398 rs28716527 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:510:110,121:129,141:593 +1 10719566 rs476164 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:471:102,102:141,121:460 +1 10719645 rs475980 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,225:74,292:467 +1 10720601 rs28403334 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:520:110,124:121,145:568 +1 10722119 rs142574459 A AACAC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:702:171,153:32,40:1048 +1 10722657 rs3838417 ACACT A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:704:172,151:40,47:1232 +1 10724236 rs284324 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,279:70,345:389 +1 10725498 rs284322 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:698:133,137:162,164:766 +1 10726689 rs284321 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:507:106,121:22,35:588 +1 10727020 rs284320 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:150,118:193,167:966 +1 10727861 rs55957723 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:432:83,105:110,126:547 +1 10728048 rs74451129 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:437:87,107:22,26:670 +1 10728141 rs284319 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:451:116,93:10,26:290 +1 10731598 rs284318 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:519:0,233:66,297:362 +1 10731625 rs284317 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:470:0,209:57,266:292 +1 10732378 rs4845840 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:492:79,115:125,163:1031 +1 10733081 rs284316 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:414:68,86:40,45:1067 +1 10734335 rs4845945 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:128,128:152,140:604 +1 10734800 rs284315 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,222:65,287:362 +1 10735079 rs284314 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,242:84,315:341 +1 10735734 rs60838458 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:511:111,117:138,136:474 +1 10736216 rs3748687 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:477:0,225:33,258:290 +1 10736434 rs284313 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:541:0,251:56,297:274 +1 10737045 rs169538 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:450:0,193:63,253:383 +1 10737226 rs284312 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:461:108,86:141,118:739 +1 10737442 rs284311 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:439:93,99:129,123:912 +1 10737562 rs284310 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:463:89,113:113,144:664 +1 10737673 rs284309 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:513:112,114:134,150:716 +1 10737932 rs6540942 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:127,130:173,162:900 +1 10738531 rs6540943 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:402:82,88:14,18:393 +1 10738560 rs71583889 GC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:404:81,96:15,8:353 +1 10739255 rs284307 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:121,109:158,137:725 +1 10739372 rs498504 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:109,118:146,155:914 +1 10739523 rs12073762 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:116,133:149,172:833 +1 10739540 rs12059484 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:120,127:157,148:817 +1 10740405 rs6540944 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:383:0,155:58,209:359 +1 10740444 rs521513 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:361:86,73:104,84:462 +1 10741426 rs474404 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:323:55,62:47,24:682 +1 10741669 rs578554 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,251:106,333:520 +1 10742192 rs34761175 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:542:171,144:113,112:818 +1 10742387 rs72641461 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:452:98,100:40,32:851 +1 10742916 rs11121606 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:137,114:160,137:691 +1 10743042 rs544722 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:630:0,287:85,357:463 +1 10743363 rs284262 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:628:0,272:114,367:529 +1 10743947 rs7555370 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:491:98,117:122,152:822 +1 10743982 rs4845841 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:487:112,99:135,139:483 +1 10744882 rs72641463 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:564:135,120:33,26:708 +1 10745123 rs483296 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:684:143,156:189,202:1498 +1 10746455 rs11579184 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:611:133,137:167,171:735 +1 10747048 rs4845946 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:123,129:157,168:845 +1 10749197 rs67969 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:496:0,225:49,269:352 +1 10750195 rs532573 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,213:104,311:502 +1 10750432 rs516243 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:522:0,233:71,293:384 +1 10750734 rs492447 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:473:0,188:62,248:330 +1 10750919 rs491334 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:481:0,197:84,262:481 +1 10751135 rs3835307 CCCCT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:308:14,128:15,15:304 +1 10754641 . CCCG C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:307:79,62:0,0:144 +1 10757054 rs4845947 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:473:105,92:146,133:1008 +1 10757199 rs4845948 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:112,96:152,145:1168 +1 10757651 rs4845842 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:468:96,115:124,132:788 +1 10758063 rs493009 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:118,116:149,149:615 +1 10758613 . G AA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:254:0,0:0,0:144 +1 10759012 rs7516542 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:125,116:175,169:1279 +1 10759741 rs2387232 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:488:116,84:155,125:872 +1 10762204 rs284288 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:130,132:169,158:579 +1 10762335 rs4845950 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:10762335_A_C:497:104,104:154,128:800 +1 10762341 rs4845951 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:10762335_A_C:495:103,108:151,131:816 +1 10763241 rs560611 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:10763241_C_T:366:83,87:0,0:268 +1 10763246 rs651374 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:10763241_C_T:373:83,86:0,0:276 +1 10763815 rs284289 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:657:0,283:115,381:564 +1 10764465 rs284290 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:463:86,112:117,135:483 +1 10767379 rs4845952 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:690:159,140:208,184:1156 +1 10767685 rs284292 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:510:118,114:23,25:554 +1 10767902 rs488834 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:620:0,276:102,357:536 +1 10768002 rs616519 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:136,140:170,171:988 +1 10771488 rs710133 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:653:128,171:147,210:919 +1 10771773 rs166912 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:10771773_T_C:631:0,283:69,350:392 +1 10771783 rs284248 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:10771773_T_C:647:127,162:169,189:560 +1 10774856 rs284247 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:588:148,119:166,150:697 +1 10777056 rs284234 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:488:0,217:56,273:348 +1 10777260 rs284233 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:534:95,124:148,166:1345 +1 10777782 rs166911 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:489:104,111:136,130:616 +1 10779039 rs184021 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,273:64,332:371 +1 10780727 rs706007 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:142,124:156,146:699 +1 10782208 rs188203 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:545:114,132:28,28:699 +1 10786314 rs284254 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:134,139:177,170:795 +1 10786806 rs284255 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:612:145,131:171,162:602 +1 10789634 rs166913 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:540:132,119:26,19:575 +1 10789697 rs284279 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:515:122,100:162,134:872 +1 10790536 rs284278 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:149,151:158,165:842 +1 10790797 rs284277 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:683:147,160:185,193:1235 +1 10794895 rs608020 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,266:86,338:464 +1 10796547 rs17035646 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:125,132:170,180:1182 +1 10796866 rs880315 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:98,106:142,158:1001 +1 10797428 rs35295665 G GC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:546:110,134:24,30:676 +1 10798489 rs34071855 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:507:121,111:138,132:452 +1 10798552 rs682178 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:123,114:167,143:484 +1 10799577 rs12046278 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:127,113:167,143:865 +1 10800598 rs492945 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:524:123,120:144,131:722 +1 10800737 rs6700479 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:10800737_C_T:585:127,121:175,158:1105 +1 10800746 rs6700483 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:10800737_C_T:549:120,119:158,153:1084 +1 10801585 rs4845843 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:125,124:138,136:754 +1 10801989 rs4845953 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:631:147,151:175,161:619 +1 10802252 rs4845954 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:571:1,266:60,309:384 +1 10802468 rs11121609 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:143,118:182,153:930 +1 10802849 rs12735339 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:104,123:147,168:968 +1 10802977 rs35672496 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:586:111,147:139,180:738 +1 10803021 rs557755 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,242:100,340:411 +1 10807369 rs205490 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:110,106:164,149:999 +1 10807676 rs72641496 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:133,101:166,136:938 +1 10807936 rs451911 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:388:66,66:109,90:683 +1 10808587 rs2076492 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:526:101,129:137,160:1146 +1 10809551 rs416218 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:491:103,99:144,134:873 +1 10810433 rs11799943 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:718:179,160:176,157:420 +1 10810614 rs72862905 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:509:0,231:0,227:278 +1 10810710 rs11121610 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:523:123,132:123,132:284 +1 10811672 rs205478 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:429:97,87:124,116:824 +1 10812417 rs205479 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:123,158:151,177:712 +1 10812859 rs205481 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:121,148:141,176:546 +1 10813675 rs205482 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:493:96,112:133,149:1033 +1 10814191 rs2387415 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:526:115,117:147,144:1099 +1 10814440 rs72643209 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:113,128:154,173:1250 +1 10814938 rs205483 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:662:102,150:102,150:1614 +1 10815673 rs6700327 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:489:114,95:148,129:705 +1 10815702 rs205485 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:499:104,114:131,151:670 +1 10820215 rs2235699 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:121,133:151,165:904 +1 10822171 rs7512641 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:117,106:154,158:913 +1 10822808 rs2073017 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:132,131:173,184:1368 +1 10823786 rs6540948 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:113,110:143,144:953 +1 10823873 rs6540949 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:121,112:146,145:807 +1 10824329 rs6540950 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:111,119:157,161:1251 +1 10824835 rs7519604 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:136,124:166,148:976 +1 10825334 rs10864469 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:134,103:157,131:904 +1 10825577 rs11121615 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:109,126:125,161:438 +1 10826420 rs55847806 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:150,122:182,153:1295 +1 10827135 rs205488 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:113,135:148,182:827 +1 10828179 rs6668047 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:646:127,168:24,30:538 +1 10831408 rs10864470 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:499:100,117:142,136:480 +1 10831584 rs60225245 GA G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:495:95,117:35,39:802 +1 10831714 rs60982498 TTCC T 50 PASS platforms=2;platformnames=Illumina,Solid;datasets=2;datasetnames=HiSeqPE300x,SolidSE75bp;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,10,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:420:100,121:0,0:250 +1 10832322 rs205472 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:518:112,121:136,153:938 +1 10832861 rs205474 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:126,133:158,181:1166 +1 10833232 rs58064215 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:138,140:169,169:961 +1 10833401 rs72643222 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:411:84,96:103,121:656 +1 10833717 rs205476 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:530:110,117:154,155:1074 +1 10833820 rs205477 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:115,120:135,150:569 +1 10834579 rs12031981 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:523:106,118:53,36:1082 +1 10834614 rs112815797 GC G 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:463:96,102:34,28:550 +1 10836393 rs41307747 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:537:104,124:132,173:951 +1 10839085 rs36083532 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:139,144:180,196:1304 +1 10841333 rs710135 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:111,122:158,164:890 +1 10842021 rs11121617 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:647:135,148:173,197:1000 +1 10845266 . TTCCTTA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:408:89,84:49,26:333 +1 10847784 rs776912 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:476:89,107:127,157:903 +1 10848060 rs11121621 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:168,149:192,173:1134 +1 10848656 rs811855 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:595:141,140:156,157:676 +1 10848699 rs800761 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:129,123:157,142:477 +1 10850287 rs11121623 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:642:143,136:185,174:879 +1 10850371 rs11121624 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:154,139:169,167:637 +1 10850844 rs1737618 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:10850844_C_A:628:173,183:134,142:968 +1 10850866 rs1776216 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:10850844_C_A:694:158,160:189,192:1138 +1 10850960 rs12092612 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:664:153,143:192,176:1253 +1 10851032 rs60389973 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:10851032_T_A:561:165,162:127,122:529 +1 10851035 rs72643233 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:10851032_T_A:550:155,161:123,126:874 +1 10870691 rs1152730 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:504:103,132:128,148:614 +1 10870863 rs12730924 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:618:129,146:163,180:875 +1 10873382 rs1769669 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:117,135:155,183:818 +1 10874422 rs11121630 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:129,138:176,173:905 +1 10874522 rs1776220 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,253:80,314:467 +1 10874877 rs7547155 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:711:155,162:63,34:926 +1 10874890 rs1776222 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:732:0,337:98,98:659 +1 10875070 rs10779747 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:124,116:153,144:836 +1 10875805 rs12757060 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:115,130:158,173:1042 +1 10876600 rs6688450 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:147,106:184,135:1129 +1 10879164 rs72643240 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:131,140:170,178:777 +1 10879568 rs4845845 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:116,100:140,117:441 +1 10879725 rs6540951 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:136,177:96,125:813 +1 10880048 rs12744556 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:466:121,85:148,113:822 +1 10880232 rs710128 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,253:77,316:445 +1 10880263 rs1750863 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:531:0,238:83,308:458 +1 10881108 . C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:546:129,95:170,148:982 +1 10881833 rs5772430 CCAT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:549:123,90:40,39:1173 +1 10883143 rs10864473 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:113,119:150,161:988 +1 10883580 rs17378720 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:127,136:153,159:935 +1 10883600 rs10864474 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:135,115:173,149:1175 +1 10883680 rs710129 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:518:122,103:144,135:506 +1 10883708 rs11121632 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:538:124,104:165,131:696 +1 10884459 rs1474704 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:373:58,217:0,147:374 +1 10884911 rs2294749 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:446:99,104:120,126:531 +1 10885036 rs2294750 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:89,118:124,155:888 +1 10885458 rs144197801 GA G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:626:141,134:44,39:786 +1 10885673 rs372308410 TACAC T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:133,120:34,36:1023 +1 10885996 rs56088040 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:666:147,142:193,179:1152 +1 10886497 rs57336881 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:599:0,277:43,320:301 +1 10886573 rs72643253 T A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:522:132,126:132,126:198 +1 10887923 rs539790 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:643:150,136:187,171:1239 +1 10888791 rs634478 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,246:93,326:434 +1 10889280 rs572950 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:121,137:160,170:807 +1 10889464 rs574737 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:541:0,227:87,87:451 +1 10889506 rs6540952 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:534:81,156:26,35:710 +1 10889885 rs489182 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:647:0,282:88,367:443 +1 10890155 rs661352 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:516:0,225:74,297:390 +1 10890345 rs493666 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:595:70,331:1,253:328 +1 10890419 rs769320 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:587:130,126:37,29:697 +1 10890704 rs1292656 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:465:109,96:137,117:531 +1 10890771 rs497483 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:506:0,222:81,295:445 +1 10890893 rs519391 T A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,262:84,84:458 +1 10890908 rs60399284 TAGCAAC T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:513:0,225:82,82:401 +1 10890932 rs520135 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:550:0,250:67,67:438 +1 10891339 rs2143385 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:117,116:138,140:757 +1 10891500 rs2840299 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:129,125:180,161:975 +1 10891687 rs526764 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:120,127:141,146:716 +1 10891777 rs527676 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:517:126,100:160,129:801 +1 10892205 rs552481 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:508:0,226:18,250:484 +1 10892206 rs552485 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:509:106,121:130,139:484 +1 10892421 rs555005 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:121,103:154,156:784 +1 10892606 rs585274 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,284:72,330:464 +1 10892807 rs586149 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:564:2,259:69,310:425 +1 10892933 rs580547 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:646:0,282:114,381:482 +1 10893220 rs472855 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:124,125:181,164:1067 +1 10893444 rs474775 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:680:156,133:206,178:1039 +1 10893504 rs599719 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:571:0,256:62,318:348 +1 10893569 rs599798 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,254:97,343:490 +1 10893811 rs601107 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:707:0,339:51,375:373 +1 10894102 rs112032691 T TTCAC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:10894072_C_T:648:0,326:0,0:259 +1 10894458 rs2764887 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:637:52,357:0,289:306 +1 10894577 rs113932196 G GGGGT 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:496:142,67:16,21:367 +1 10894724 rs541695 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:761:1,354:86,414:488 +1 10894981 rs616724 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:10894981_T_G:581:138,118:34,39:1020 +1 10894995 rs564760 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:10894981_T_G:589:131,123:40,36:518 +1 10895794 rs630677 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:467:109,94:128,113:480 +1 10896135 rs1292660 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,250:57,299:357 +1 10897690 rs521333 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:626:0,265:104,367:474 +1 10898409 rs11121633 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:117,120:154,152:816 +1 10899690 rs471404 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:624:150,137:176,159:806 +1 10899840 rs494359 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:511:115,113:145,136:721 +1 10900237 rs498085 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:513:124,110:134,141:514 +1 10900749 rs613156 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:513:0,223:68,68:434 +1 10900797 rs138268009 C CAA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:473:108,89:35,34:795 +1 10901000 rs35154018 CT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:658:145,139:43,36:807 +1 10901907 rs555027 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:129,126:162,142:872 +1 10902453 rs560310 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,231:56,287:338 +1 10903270 . G GTATT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:336:0,101,77:0,0,0:259 +1 10903270 . GTATTTATT G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:336:0,101,77:0,0,0:259 +1 10904400 rs141072198 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:135,144:168,175:1007 +1 10904734 rs475979 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:728:164,173:53,31:941 +1 10904926 rs34753131 C CT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:724:0,316:103,103:508 +1 10905090 rs1292663 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:686:140,146:186,194:1181 +1 10906634 rs535724 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:136,113:158,126:650 +1 10907729 rs566800 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:141,119:200,159:705 +1 10907842 rs672270 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,267:70,317:440 +1 10908412 rs1292666 T C 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:167,178:118,125:1242 +1 10908840 rs1292667 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:528:0,235:52,287:340 +1 10909593 rs515331 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:636:0,288:59,347:354 +1 10909909 rs539297 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:599:0,261:89,345:447 +1 10910069 rs1292668 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:607:143,133:169,157:601 +1 10910266 rs542803 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,237:70,292:380 +1 10910576 rs607715 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:117,123:149,154:627 +1 10910768 rs608545 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:111,140:140,159:767 +1 10911030 rs609812 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:589:0,265:61,326:349 +1 10911109 rs609913 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:595:127,120:167,176:772 +1 10911329 rs1292669 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:568:1,260:1,253:288 +1 10911447 rs622066 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:116,136:144,183:776 +1 10911960 rs78586742 C CCT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:593:0,273:53,53:410 +1 10912430 rs494738 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:734:0,331:116,418:565 +1 10912551 rs637037 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:613:0,267:117,356:571 +1 10912624 rs496604 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:475:0,211:62,269:351 +1 10913096 rs70977514 T TC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,220:67,67:447 +1 10913131 rs66786647 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,258:89,89:590 +1 10913457 rs4845958 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:643:0,287:94,354:517 +1 10914807 rs1152731 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:121,123:158,157:1038 +1 10915507 rs667444 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:612:0,283:75,339:441 +1 10917440 rs569456 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:556:1,247:66,306:387 +1 10918667 rs491320 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:121,123:177,178:1436 +1 10918758 rs622120 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:642:0,289:108,360:598 +1 10919094 rs1292646 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:608:0,275:81,338:455 +1 10919235 rs1152732 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:494:0,213:54,265:312 +1 10919322 rs1152733 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:512:0,209:96,303:464 +1 10920472 rs549925 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:453:0,203:61,254:392 +1 10920576 rs550887 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:481:0,209:84,281:448 +1 10920738 rs592431 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:10920738_T_C:434:0,189:73,256:422 +1 10920745 rs552630 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:10920738_T_C:427:0,179:81,252:428 +1 10921228 rs1280993 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:494:110,93:156,124:1024 +1 10921903 rs1769678 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:119,132:150,173:1221 +1 10922290 rs1280992 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:129,136:146,167:792 +1 10922576 rs1280991 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:447:109,107:114,115:648 +1 10923387 . TGTGT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:173:0,0:0,0:160 +1 10924273 rs1280989 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:648:151,152:166,166:852 +1 10924352 rs145381399 T TTGTGTG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:400:99,92:99,92:198 +1 10924710 rs1280988 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:705:161,154:199,204:1033 +1 10924958 rs1280987 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:548:126,129:145,153:741 +1 10925835 rs144825925 G GGACA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:258:52,79:0,0:160 +1 10926127 rs2790694 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:424:92,105:101,119:802 +1 10926560 rs1281002 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:414:85,100:109,117:456 +1 10927820 rs34256108 C CT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:147,120:27,18:461 +1 10929298 rs1281001 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,260:100,343:498 +1 10929928 rs1281000 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:608:0,276:74,337:389 +1 10930313 rs34370400 T TC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:554:0,246:81,81:525 +1 10931623 rs1280999 T C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:430:5,170:5,170:198 +1 10932458 rs35179429 C CA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:544:0,234:81,81:483 +1 10932545 rs1280998 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,244:80,317:406 +1 10933010 rs1280997 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:538:0,250:48,292:342 +1 10935232 rs1280996 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:485:0,230:52,271:355 +1 10935423 rs1280995 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:589:0,277:61,320:417 +1 10946635 rs34820796 CA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xGATK;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:114:2,104:2,104:99 +1 10947580 rs4845960 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:641:0,296:80,361:458 +1 10953024 rs11121646 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:416:62,203:0,0:217 +1 10953834 rs11121647 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,249:58,307:363 +1 10956645 rs2387420 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,267:66,322:406 +1 10957719 rs6670956 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:541:0,242:88,302:495 +1 10957984 rs12410376 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,246:71,314:392 +1 10958191 rs744795 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:515:0,236:48,284:328 +1 10958388 rs35841890 GC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:10958388_GC_G:484:0,228:26,26:330 +1 10958408 rs34196769 A AC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:10958388_GC_G:493:1,227:36,36:337 +1 10958598 rs11121649 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,250:87,335:443 +1 10959586 rs4845961 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:536:1,230:81,310:328 +1 10960506 . G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:552:127,104:20,32:452 +1 10961876 rs11586085 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:499:0,227:49,276:325 +1 10962372 rs12750845 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:507:0,228:71,286:413 +1 10964170 rs12732550 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:482:0,211:64,273:353 +1 10965942 rs113487621 CT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:341:0,161:0,161:198 +1 10968479 rs7515021 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,241:0,210:635 +1 10968730 rs10864479 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:597:0,275:70,330:415 +1 10969950 rs4845962 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:515:0,228:77,289:444 +1 10970184 rs4845847 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:434:1,189:64,248:367 +1 10970922 rs1280978 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,234:79,296:459 +1 10971088 rs4845963 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:565:2,242:88,316:453 +1 10972185 rs11590648 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:511:0,231:48,279:272 +1 10972413 rs34654017 CA C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:258:2,95:2,95:198 +1 10972521 rs7527861 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:526:0,221:71,287:298 +1 10974689 rs1280977 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:621:0,276:94,359:467 +1 10974968 rs7548661 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,261:53,308:356 +1 10975382 rs12566485 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,261:96,346:462 +1 10975582 rs1280976 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:624:0,299:49,335:324 +1 10976695 rs1280975 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:577:0,268:61,322:377 +1 10977102 rs6540954 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:504:2,229:73,276:452 +1 10977240 rs6540955 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:538:1,242:73,299:432 +1 10977570 rs1280974 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,253:89,339:456 +1 10977646 rs72643298 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:135,140:156,164:908 +1 10978325 rs34811121 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:631:0,279:93,353:502 +1 10978767 rs72643299 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:138,128:179,156:669 +1 10978942 rs1280969 C G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:468:0,172:63,63:413 +1 10979069 rs1280967 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:382:0,126:42,42:302 +1 10979573 rs1280964 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:10979573_G_A:398:0,166:41,41:356 +1 10979586 rs34218919 TCTC T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:10979573_G_A:385:0,172:25,25:324 +1 10979684 rs1280963 C A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:421:0,165:32,32:338 +1 10980017 rs1280962 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:492:0,222:40,262:294 +1 10980079 rs1612263 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:10980079_G_A:512:0,224:61,285:348 +1 10980083 rs1612293 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:10980079_G_A:510:0,228:55,283:340 +1 10980242 rs1280961 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:577:57,322:0,257:378 +1 10980441 rs1280960 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:541:0,244:66,304:383 +1 10980544 rs4845964 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:563:1,226:91,91:519 +1 10980998 rs2387422 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:739:0,334:105,411:533 +1 10981516 rs4845965 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:507:0,177:75,252:288 +1 10983391 rs60665308 A AT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:865:0,412:51,51:404 +1 10984259 rs1280986 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:619:0,285:62,336:375 +1 10985068 rs10779748 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:784:0,359:80,431:428 +1 10985343 rs1280982 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:658:0,297:48,345:318 +1 10986060 rs11589800 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:10986060_G_C:550:0,245:58,303:327 +1 10986062 rs1280980 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:10986060_G_C:549:0,244:58,302:327 +1 10986284 rs1292633 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:43,341:0,292:226 +1 10986588 rs35995177 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,251:92,343:398 +1 10987971 rs3121075 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,270:0,270:252 +1 10989128 rs1769663 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:515:0,241:53,280:314 +1 10989679 rs34023722 CA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:388:3,187:3,187:99 +1 10990707 rs143081652 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:640:157,129:194,150:576 +1 10990821 rs2764890 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,267:91,356:461 +1 10991450 rs1749879 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:596:0,271:63,326:378 +1 10991654 rs1769664 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:599:0,262:63,325:364 +1 10992104 rs2387698 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:754:0,362:56,390:428 +1 10992254 rs1620124 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,281:39,308:331 +1 10992695 rs34877104 A T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:440:6,179:6,179:198 +1 10992697 rs4845970 A T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:450:0,195:0,195:198 +1 10992936 rs71645078 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:459:0,185:0,185:249 +1 10993174 rs12046334 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,266:54,320:326 +1 10995320 rs10864482 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:122,115:171,150:838 +1 10995371 rs11121655 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:502:110,103:151,132:816 +1 10995479 rs1281003 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:109,141:171,189:1388 +1 10996382 rs9803711 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:744:166,172:200,199:1058 +1 10997598 rs1281033 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:109,111:164,151:1012 +1 11000276 rs12755921 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:162,124:207,178:1469 +1 11000721 rs6664866 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:661:152,140:192,182:1193 +1 11002488 rs6656310 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:646:142,131:189,187:1118 +1 11002631 rs1281028 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:546:131,110:158,141:900 +1 11005291 rs7521386 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:114,144:144,203:806 +1 11005417 rs7521498 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:532:128,112:27,32:809 +1 11005495 rs6666764 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:496:114,96:155,126:933 +1 11005920 rs11121656 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:133,142:166,180:787 +1 11006017 rs6667276 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:130,114:161,159:693 +1 11006569 rs2275490 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:118,131:165,165:848 +1 11006850 rs2275489 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:583:133,122:169,162:1048 +1 11006893 rs2275488 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:115,117:148,162:1098 +1 11007159 rs6696682 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:659:173,134:186,168:966 +1 11018580 rs72644034 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:478:110,111:129,130:772 +1 11032215 rs72644041 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:501:113,107:148,127:796 +1 11032827 rs2003046 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:108,125:173,159:1125 +1 11032970 rs111510981 GC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:538:108,113:45,32:714 +1 11033051 rs72644043 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:639:118,134:174,189:1339 +1 11033082 rs12565727 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:578:129,119:178,135:659 +1 11033322 rs2095921 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:611:134,145:159,167:568 +1 11033457 rs2095920 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:725:240,201:149,137:1053 +1 11033797 rs6675082 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:467:110,103:24,20:462 +1 11034019 rs112321547 C CCCCCA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:456:108,74:41,28:581 +1 11034145 rs12081176 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:416:95,84:128,104:697 +1 11034165 rs12081181 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:388:88,87:106,106:534 +1 11034195 rs12081186 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:408:93,81:93,81:486 +1 11034239 rs12081197 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:374:92,83:92,83:286 +1 11034347 rs72644044 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:433:92,92:122,124:913 +1 11034374 rs34032547 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11034374_C_G:441:96,98:121,125:813 +1 11034382 rs35033941 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11034374_C_G:440:96,102:122,121:725 +1 11048112 . G GAGGA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:304:0,70,73:0,0,0:160 +1 11048112 . G GAGGAAGGA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:304:0,70,73:0,0,0:160 +1 11055930 rs11580719 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,259:42,299:297 +1 11056363 rs11121672 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:658:0,309:64,344:446 +1 11056805 rs7531761 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:557:1,270:1,270:243 +1 11058030 rs11121673 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:667:0,289:105,383:519 +1 11058588 rs11121674 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:665:0,312:71,367:415 +1 11058974 rs7521435 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:720:0,344:54,376:405 +1 11060075 rs11121675 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:712:0,348:58,373:434 +1 11060799 rs7517230 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:899:207,210:254,224:979 +1 11061559 rs7520244 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:632:0,288:78,356:419 +1 11062741 rs7533983 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:543:1,243:48,290:295 +1 11063043 rs11121676 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:664:0,319:55,345:423 +1 11063487 rs12025269 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,255:91,332:479 +1 11063750 rs10779749 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:584:0,273:38,311:312 +1 11067650 rs11121677 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:702:0,329:67,385:401 +1 11067792 rs9430167 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:845:0,403:59,462:320 +1 11068690 . C CATAA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:334:85,83:0,0:156 +1 11068750 rs61775595 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:536:22,280:1,259:146 +1 11069516 rs3753236 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:512:0,227:0,227:354 +1 11069966 rs11121678 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:611:0,292:73,334:468 +1 11070380 rs9430171 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:597:0,278:54,321:380 +1 11070652 rs12744501 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:664:0,307:69,358:423 +1 11070731 rs12029968 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:646:0,288:59,347:359 +1 11070919 rs9430172 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:578:0,272:0,272:256 +1 11071392 rs70977534 GA G 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:427:0,166:45,45:183 +1 11072117 rs9430335 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:677:1,311:82,373:467 +1 11072579 rs968545 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,288:60,335:400 +1 11072885 rs4133584 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:542:0,236:75,311:378 +1 11073507 rs58761409 TCA T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:653:1,304:61,61:444 +1 11074250 rs3765895 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:866:0,412:92,474:530 +1 11074420 rs3765896 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:668:0,303:83,373:427 +1 11075371 rs7550141 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:498:0,229:35,264:283 +1 11075511 rs9430338 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:614:1,289:38,326:285 +1 11075825 rs111476811 C CAG 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:563:13,297:0,0:287 +1 11078225 rs6689580 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:719:0,317:82,397:415 +1 11078312 rs6698075 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:698:0,311:66,377:363 +1 11078397 rs147029491 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:11078397_C_T:538:0,276:72,72:390 +1 11078398 rs138627759 A AATCTTTG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:11078397_C_T:535:0,273:72,72:390 +1 11078401 rs201077531 A ACAGGTG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:11078397_C_T:533:0,274:67,67:378 +1 11079077 rs2273348 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:798:0,360:108,447:514 +1 11079386 rs12404672 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:809:201,181:191,172:964 +1 11079413 rs7546126 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:719:1,370:1,351:275 +1 11079773 rs1967714 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:638:0,284:81,365:299 +1 11079958 rs1967713 A G 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:512:0,188:101,101:393 +1 11080723 rs143130606 T TG 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:403:0,152:43,43:263 +1 11081210 rs1922991 T A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:592:66,320:3,257:117 +1 11081880 rs1474891 G T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:591:1,259:73,324:300 +1 11082054 rs3835416 AG A 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=3;datasetnames=CGnormal,HiSeqPE300x,SolidSE75bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:775:0,356:82,82:286 +1 11085004 rs5772439 A ATGTTT 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:765:0,353:81,81:313 +1 11086097 rs3215616 A AT 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=3;datasetnames=CGnormal,HiSeqPE300x,SolidSE75bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:734:0,333:93,93:435 +1 11086332 rs2273347 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:775:0,356:97,429:433 +1 11086439 rs2261695 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:684:0,317:84,389:330 +1 11086717 rs1033638 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:627:0,278:84,352:363 +1 11087524 rs1782455 G A 50 PASS platforms=4;platformnames=Illumina,CG,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:847:0,295:83,363:436 +1 11087835 rs1782454 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:802:0,386:61,418:340 +1 11089463 rs1782457 T A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:599:0,279:0,276:149 +1 11090916 rs12711521 C A 50 PASS platforms=4;platformnames=Illumina,CG,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:671:0,275:86,336:422 +1 11091529 rs6696747 A T 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1|1:11091529_A_T:338:0,121:35,35:246 +1 11093334 rs7555662 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:619:0,284:0,284:140 +1 11093741 rs7556039 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:662:1,293:84,367:329 +1 11093894 rs12755574 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:539:4,248:35,279:178 +1 11094204 rs11583653 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:552:0,251:38,289:201 +1 11094466 rs181112690 A C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:171,155:112,112:862 +1 11094665 rs11121684 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:634:1,289:52,333:257 +1 11095039 rs6695096 C T 50 PASS platforms=4;platformnames=Illumina,CG,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:723:0,282:60,318:387 +1 11095424 rs11121685 A T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,248:78,326:208 +1 11095585 rs56375560 A AATC 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:383:0,190:0,0:152 +1 11096422 rs12732536 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:313:3,114:78,78:308 +1 11096842 rs116585704 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:119,125:147,144:639 +1 11099387 rs57562185 GTGGATGGATGGA G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:251:0,139:0,0:143 +1 11099788 rs12136468 G A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:476:1,235:1,235:99 +1 11099833 rs6660417 T A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:610:106,374:0,221:512 +1 11100446 rs79574441 T TA 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:469:0,180:57,57:255 +1 11103967 rs910663 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:478:55,247:2,194:185 +1 11104370 rs3765900 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,249:86,332:313 +1 11104523 rs11589970 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:138,145:167,168:778 +1 11104676 rs3765901 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:552:3,257:50,297:239 +1 11104712 rs3819991 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:557:61,315:0,254:229 +1 11104845 rs9430347 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:541:0,257:34,291:179 +1 11105106 rs2273345 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:11105106_C_T:550:1,267:30,289:209 +1 11105122 rs2273344 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:11105106_C_T:607:1,286:41,314:222 +1 11106359 rs10779750 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:632:0,284:78,359:297 +1 11106935 rs72647262 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:537:135,96:172,130:848 +1 11107439 rs7548659 G T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:544:0,246:52,298:226 +1 11108306 rs72647263 T C 50 PASS platforms=2;platformnames=Illumina,Solid;datasets=2;datasetnames=HiSeqPE300x,SolidSE75bp;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,10,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:519:121,124:118,122:174 +1 11110020 rs11577987 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:570:135,130:135,130:240 +1 11111161 rs72647264 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:642:150,139:180,170:590 +1 11112836 rs1884429 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:729:0,326:82,399:338 +1 11118390 rs1211575 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:502:0,226:56,274:349 +1 11119135 rs743577 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:553:0,248:58,306:244 +1 11119899 rs7545802 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:526:0,244:30,274:178 +1 11120202 . CGGCGCAGAGT C 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:408:89,96:11,10:302 +1 11120520 rs2748881 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:555:0,269:0,263:183 +1 11124885 rs2486922 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:552:54,273:0,0:282 +1 11124912 . C TT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:213:0,0:0,0:154 +1 11124979 rs2261317 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:567:0,228:68,296:207 +1 11125050 rs2486920 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:685:0,312:80,374:379 +1 11125866 rs2039840 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:692:0,312:93,398:369 +1 11126399 rs2791661 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:682:0,301:94,395:336 +1 11126432 rs2748880 C G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:612:0,264:93,357:298 +1 11126490 rs2748879 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,246:51,297:233 +1 11126517 rs2791660 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,255:45,298:235 +1 11126569 rs2791659 C A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:593:0,266:72,328:324 +1 11126941 rs6701726 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:624:0,295:0,295:154 +1 11127315 rs6655938 C T 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:482:1,151:79,79:345 +1 11127350 rs11121687 A G 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:456:0,137:96,96:405 +1 11127422 rs11121688 C G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1|1:11127422_C_G:421:0,148:58,58:241 +1 11127445 rs11576271 T C 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1|1:11127422_C_G:434:0,157:43,43:268 +1 11127764 rs2261217 C A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:678:1,299:98,380:420 +1 11127871 rs2791658 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:638:0,301:49,350:232 +1 11128001 rs2791657 A G 50 PASS platforms=4;platformnames=Illumina,CG,Ion,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:888:0,311:57,365:345 +1 11128329 rs2791656 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:577:0,260:63,323:232 +1 11128654 rs2791655 G A 50 PASS platforms=4;platformnames=Illumina,CG,Ion,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:734:0,291:48,330:286 +1 11129317 rs2791654 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:387:138,229:0,0:372 +1 11129434 rs2748878 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:11129434_T_C:453:0,205:46,251:198 +1 11129437 rs2748877 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:11129434_T_C:453:0,206:45,251:229 +1 11129848 rs2791653 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,243:57,295:256 +1 11130116 rs910661 C A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:542:1,237:74,306:308 +1 11130418 rs1318348 A G 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:446:0,182:69,69:282 +1 11130578 rs142090718 CAAAAA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:251:3,113:3,113:99 +1 11130643 rs910660 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:438:0,180:47,227:222 +1 11131433 rs6540963 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:497:0,229:74,275:317 +1 11131667 rs35990090 C CCT 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:305:0,125:57,57:235 +1 11131769 rs34741710 G GC 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=3;datasetnames=CGnormal,HiSeqPE300x,SolidPE50x50bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidPE50x50GATKHC;datasetsmissingcall=10,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:229:0,88:41,41:268 +1 11131923 rs58280885 CCAA C 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=3;datasetnames=CGnormal,HiSeqPE300x,SolidSE75bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:407:0,159:99,99:382 +1 11132217 rs1130683 G A 50 PASS platforms=4;platformnames=Illumina,CG,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:542:0,208:75,265:369 +1 11132541 rs2791650 G C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,264:80,316:391 +1 11132561 rs2791649 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:555:0,262:67,298:346 +1 11132638 rs2791648 G T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:607:0,269:101,354:423 +1 11132801 rs2791647 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:528:0,233:83,303:359 +1 11132965 rs7533211 G C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,257:50,293:280 +1 11133242 rs2791646 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:585:0,264:58,322:257 +1 11134157 rs2748876 T G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:494:0,237:37,262:235 +1 11137778 rs2259886 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,279:40,300:249 +1 11138469 rs12027609 T G 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:498:0,185:79,79:350 +1 11141187 rs2258621 C G 50 PASS platforms=4;platformnames=Illumina,CG,Ion,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:698:0,262:67,322:281 +1 11143688 rs66851937 A T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:133,124:119,113:236 +1 11148759 rs1148485 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:637:0,284:70,354:280 +1 11150053 rs70977545 CT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:317:8,142:2,136:112 +1 11151779 rs1148482 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:675:0,308:69,375:282 +1 11156528 rs70977546 CT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xGATK;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:84:1,80:1,80:99 +1 11160674 rs2791644 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,219:79,298:275 +1 11164937 rs2486918 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:456:0,208:38,246:173 +1 11166302 rs6540964 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,231:92,314:458 +1 11170131 rs2261434 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:751:0,340:61,391:400 +1 11170743 rs2015818 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:717:0,325:87,400:366 +1 11172006 rs1148480 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:665:79,386:0,0:449 +1 11172016 rs113578497 A AAAAC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:468:0,237:0,0:259 +1 11174067 rs1148478 A T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:556:0,262:61,303:327 +1 11178425 rs76313983 CTAGGA C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:339:0,158:21,21:300 +1 11187893 rs1770344 T C 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:742:0,275:80,331:545 +1 11193560 rs34798259 A AGTT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,270:73,73:435 +1 11205058 rs1057079 C T 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:942:1,299:59,355:437 +1 11207269 rs2791643 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:774:0,339:0,315:602 +1 11214289 rs2261159 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:643:0,329:75,321:410 +1 11214580 rs1770345 C A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:583:133,151:133,151:198 +1 11220809 rs7533982 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:667:0,297:90,369:487 +1 11222126 rs7553514 T C 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:633:33,335:0,302:265 +1 11224916 rs151117471 T G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:611:143,161:143,161:198 +1 11227864 rs4240892 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,246:74,318:406 +1 11230629 rs4845979 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:688:0,307:79,383:310 +1 11232841 rs4589117 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:439:0,190:29,219:278 +1 11233559 rs4845852 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:634:0,289:62,349:340 +1 11236524 rs12041740 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:669:1,310:71,361:436 +1 11238049 rs72505065 C CA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:666:0,298:90,90:530 +1 11239515 rs6674994 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:680:0,308:96,381:537 +1 11240958 rs35697937 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:124,126:155,145:535 +1 11243470 rs4845853 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:725:0,330:76,399:412 +1 11247838 rs7555071 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:666:0,305:66,365:395 +1 11252716 rs1205593 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,241:57,298:344 +1 11254006 rs5772444 AC A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,255:87,87:380 +1 11261929 rs4845854 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:615:0,288:36,318:304 +1 11262020 rs12120734 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,259:71,316:397 +1 11262310 rs4845855 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:542:0,242:67,309:331 +1 11264033 rs34085316 CA C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,276:57,57:411 +1 11265717 rs2300095 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:739:1,346:67,407:377 +1 11265785 rs2253213 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:696:0,311:82,388:444 +1 11266044 rs2300094 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:706:2,332:82,380:412 +1 11266251 rs67810028 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:754:172,187:194,207:1030 +1 11266392 rs2300093 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:698:1,317:88,392:476 +1 11266464 rs2300092 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:672:0,310:66,366:300 +1 11266711 rs2300091 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:726:0,328:74,402:300 +1 11267283 rs11121698 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:546:0,252:38,290:269 +1 11267750 rs2335397 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:568:0,238:79,310:322 +1 11269796 rs1010447 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:727:0,330:97,408:412 +1 11269917 rs2016559 G T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:695:102,404:1,294:355 +1 11270171 rs2335398 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:532:0,234:62,296:280 +1 11271576 rs4845982 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,242:83,323:313 +1 11274022 rs742824 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:730:1,346:101,396:504 +1 11274547 rs4845856 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:752:0,350:87,411:393 +1 11275588 rs2746637 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:660:0,292:108,380:413 +1 11278125 rs2746638 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:579:0,258:73,320:289 +1 11278163 rs7526649 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,254:62,316:250 +1 11278289 rs7540890 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,222:74,296:288 +1 11278813 rs7549109 G C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:674:0,316:77,364:367 +1 11283389 . TTA T 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=2;callsetnames=CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:366:68,68:68,68:282 +1 11283964 rs7543400 C G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,246:49,295:238 +1 11284336 rs10779751 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:837:0,407:46,442:360 +1 11285479 rs201304113 CTT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:431:1,207:1,207:198 +1 11285574 rs4845984 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:649:0,278:76,354:399 +1 11285680 rs4845857 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:631:0,266:92,358:450 +1 11286178 rs12124983 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:769:0,376:48,407:377 +1 11286745 rs12029823 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:522:0,247:32,32:276 +1 11286872 rs12032364 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:637:0,292:63,349:371 +1 11288247 rs12739368 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:584:0,253:100,337:507 +1 11288348 rs12752896 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,231:71,300:381 +1 11288618 rs4845985 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:568:0,238:114,334:543 +1 11288633 rs4845986 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:571:0,238:112,334:552 +1 11288758 rs1064261 G A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:640:0,246:90,322:508 +1 11289161 rs2076655 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,275:109,374:498 +1 11289466 rs2788570 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:603:0,268:84,335:463 +1 11290178 rs35067541 TA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:343:1,154:1,154:198 +1 11290341 rs2300089 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:501:0,216:77,291:393 +1 11292666 rs10864495 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:676:0,303:87,382:462 +1 11292753 rs2024625 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:585:0,254:86,340:413 +1 11292881 rs2746639 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:642:0,288:60,348:324 +1 11292952 rs2746640 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:710:75,376:0,301:267 +1 11293147 rs11121702 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:681:0,302:78,378:403 +1 11293200 rs7541998 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:706:0,330:66,392:392 +1 11293792 rs11121703 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:712:0,327:93,390:541 +1 11293959 rs11121704 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:687:0,320:81,371:507 +1 11294474 rs718206 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:536:1,240:77,296:418 +1 11294942 rs1883964 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,269:67,311:425 +1 11295868 rs1212929 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:481:0,224:41,265:304 +1 11297762 rs7524202 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:543:0,225:101,323:418 +1 11298790 rs2024627 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:647:0,263:0,0:548 +1 11299511 rs7544489 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:621:0,289:56,337:340 +1 11301063 rs6661859 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:729:97,411:0,305:465 +1 11301196 rs6697896 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:553:0,227:90,317:453 +1 11301714 rs1135172 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:630:0,257:55,299:431 +1 11302065 rs11121706 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,267:73,329:413 +1 11304242 rs12036364 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,240:47,287:308 +1 11304583 rs6672513 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,280:42,322:308 +1 11304720 rs4845858 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:720:0,329:79,401:379 +1 11304873 rs4845859 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:757:0,359:73,406:478 +1 11305316 rs6686835 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:724:0,332:89,396:514 +1 11305663 rs1205592 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:731:0,315:121,419:580 +1 11306279 rs4845987 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:649:0,307:58,345:395 +1 11306661 rs35477451 T TG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:617:0,277:73,73:440 +1 11306882 rs6679878 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:673:0,302:100,378:549 +1 11307253 rs11121708 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:514:0,216:81,297:400 +1 11308762 rs6670821 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,275:0,275:265 +1 11309008 rs35667215 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:695:136,179:150,191:501 +1 11310675 rs35962507 CT C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:524:1,247:56,56:475 +1 11311217 rs35501739 G GC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:462:0,216:46,46:416 +1 11313244 rs11121710 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:497:1,218:91,279:466 +1 11314657 rs5772446 T TA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:637:0,302:55,55:461 +1 11315706 rs10864496 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:571:0,256:47,303:318 +1 11317320 rs2092642 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:543:0,242:59,301:349 +1 11317932 rs7554251 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:551:1,266:28,293:270 +1 11317977 rs7517041 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,242:44,286:301 +1 11318236 rs7525957 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:719:0,304:83,374:469 +1 11318763 rs2076657 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:748:0,346:102,411:560 +1 11319587 rs4845988 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:730:0,337:68,392:371 +1 11320329 rs11121712 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:644:0,303:45,345:321 +1 11320350 rs11121713 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:621:0,293:39,332:299 +1 11320776 rs35365679 C CT 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:677:2,302:44,44:223 +1 11322156 rs1883965 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,229:84,303:435 +1 11322565 rs2295079 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,247:77,324:373 +1 11322628 rs2295080 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:619:0,257:121,372:522 +1 11323901 rs7542591 C G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1/1:.:354:0,137:0,137:198 +1 11324920 . C CAAATAAATAAATAAATAAAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:504:0,145,117:0,0,0:259 +1 11324920 . C CAAATAAATAAATAAATAAATAAAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:504:0,145,117:0,0,0:259 +1 11325910 rs6671083 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:744:0,344:69,396:436 +1 11329570 rs7513418 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:664:153,151:180,178:1105 +1 11356943 rs58214366 C CA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:684:163,144:32,40:1013 +1 11359632 rs2788539 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:638:144,128:198,165:1148 +1 11362397 rs2744818 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:558:113,337:0,210:402 +1 11364224 rs12039388 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:128,116:185,168:1200 +1 11368045 rs12040842 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:627:194,180:119,121:1343 +1 11371886 rs12730468 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:552:123,112:47,28:668 +1 11374676 rs55845627 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:117,123:157,158:825 +1 11385017 rs70977562 T TA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:657:150,138:36,41:849 +1 11387807 rs72633740 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:505:118,91:166,129:1148 +1 11388966 rs909835 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,243:107,322:562 +1 11407886 rs4845862 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:504:122,110:143,122:582 +1 11407962 rs4845995 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:537:142,94:167,130:606 +1 11408058 rs4845996 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:416:104,92:104,92:307 +1 11408144 rs4845997 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:476:109,116:123,124:548 +1 11408743 rs72633767 C G 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:708:218,180:177,130:1007 +1 11409128 rs36062258 CT C 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:523:111,129:21,12:216 +1 11409176 rs2744844 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:138,143:45,33:951 +1 11409469 rs10864498 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:686:147,156:188,189:956 +1 11410483 rs2788559 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:11410483_T_G:562:121,110:112,104:1956 +1 11410484 rs2744846 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:11410483_T_G:561:119,111:110,103:1956 +1 11411071 rs2744847 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:123,116:183,150:747 +1 11411432 rs2788558 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:629:127,147:176,185:1045 +1 11411848 rs4845998 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:645:144,142:189,170:845 +1 11412274 rs4845999 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:716:137,155:65,60:1396 +1 11412969 rs2744849 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:108,121:144,175:835 +1 11414172 rs11121722 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:707:149,152:210,187:902 +1 11415659 rs10864499 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:93,136:138,172:1003 +1 11416252 rs733761 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:574:134,126:167,150:838 +1 11416294 rs11121723 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:627:136,129:200,168:852 +1 11416848 rs2005996 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:448:89,84:116,107:572 +1 11418276 rs12040952 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:147,127:173,159:962 +1 11418440 rs2788545 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:121,128:165,182:1128 +1 11418570 rs2788544 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:117,118:159,147:770 +1 11418774 rs2744851 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:540:121,113:31,25:701 +1 11419403 rs2744852 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:122,110:163,138:1209 +1 11419527 rs34513201 C CA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:540:117,115:32,49:946 +1 11419556 rs12041992 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:574:117,130:39,57:984 +1 11419613 rs2744853 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:105,105:135,137:663 +1 11419675 rs35164768 T TC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:94,106:64,55:1371 +1 11419868 rs2744854 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:130,132:170,173:1152 +1 11420100 rs2744855 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:493:88,128:123,147:630 +1 11420234 rs2253501 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:115,131:155,163:982 +1 11421072 rs10779754 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:639:144,145:184,165:951 +1 11421815 rs2744857 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:125,125:177,164:1165 +1 11422400 rs10864500 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:616:138,117:38,35:814 +1 11422737 rs2744858 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:519:109,83:40,53:1105 +1 11423039 rs60655095 GGGA G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:450:119,104:8,7:465 +1 11423892 rs2788576 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:514:110,111:155,135:696 +1 11424095 rs2788575 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:132,121:158,155:593 +1 11424109 rs2788574 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:124,122:148,137:476 +1 11424811 rs2744859 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:502:82,104:38,30:895 +1 11425031 rs2744860 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:598:131,130:45,37:890 +1 11425270 rs12033019 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:524:125,114:148,131:485 +1 11425395 rs2788573 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:116,114:145,140:670 +1 11426527 rs2744809 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:673:148,164:174,184:955 +1 11446353 rs34444783 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,269:76,332:435 +1 11447805 rs6660541 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:115,123:170,159:1190 +1 11449431 rs7365896 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:555:156,148:108,108:120 +1 11451939 rs7511819 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:695:150,162:45,36:882 +1 11453158 rs11121725 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:525:119,108:163,127:570 +1 11453271 rs11121726 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:583:118,130:172,155:611 +1 11453577 rs6702848 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:131,127:146,139:613 +1 11456092 rs12094694 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:688:160,146:186,193:1146 +1 11456605 rs4345807 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:493:108,119:134,136:700 +1 11456881 rs7550838 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:123,110:155,136:648 +1 11457395 rs4846000 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:548:119,126:32,23:610 +1 11459017 rs7552089 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:500:91,111:117,138:743 +1 11459270 rs6540972 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:628:148,147:161,167:471 +1 11460673 rs2379133 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:641:153,129:200,160:1138 +1 11461601 rs6671983 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:128,127:167,157:967 +1 11462005 rs4846001 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:137,150:109,109:610 +1 11464770 . T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=2;callsetnames=HiSeqPE300xfreebayes,CGnormal;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:290:38,49:0,0:1001 +1 11465588 rs12128969 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:467:88,114:105,146:478 +1 11465639 rs3099635 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:489:113,98:142,125:673 +1 11466172 rs2379140 A G 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:185,157:127,127:713 +1 11467354 rs4846002 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:132,133:179,179:1190 +1 11467914 rs2922247 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:122,133:162,165:946 +1 11468442 rs11121728 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:662:144,154:186,180:1103 +1 11472810 rs56259355 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:530:117,123:147,145:708 +1 11473126 rs55895262 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:520:124,124:135,141:722 +1 11473580 rs7526065 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:391:62,67:105,110:1119 +1 11474058 rs7540500 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:408:87,107:104,109:487 +1 11474435 rs11121729 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:507:110,113:134,140:947 +1 11476142 rs10864503 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:726:162,160:195,200:1101 +1 11476203 rs10864504 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:663:145,121:206,177:1391 +1 11476227 rs34990737 C CT 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:537:141,144:118,110:406 +1 11476541 rs2890085 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:135,141:167,164:995 +1 11476574 rs11121730 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:132,125:169,159:853 +1 11477192 rs2379143 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:132,136:151,164:849 +1 11477294 rs10864505 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:136,157:144,184:609 +1 11478577 rs6670474 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:618:147,146:20,23:551 +1 11479652 rs7539934 A G 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:586:167,142:136,127:359 +1 11480809 rs6690077 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:449:97,119:114,119:712 +1 11480820 rs3124621 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:502:128,98:148,127:1173 +1 11480970 rs10449316 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:125,121:161,157:1084 +1 11481186 rs3124622 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:456:87,88:51,33:831 +1 11481295 rs4845864 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:381:71,52:23,30:676 +1 11481608 rs2922235 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11481608_A_G:590:152,116:182,132:892 +1 11481613 rs2922236 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11481608_A_G:582:147,118:178,131:859 +1 11481958 rs3123600 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:552:0,233:81,314:405 +1 11482010 rs3003915 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:137,106:191,157:1165 +1 11482260 rs10864506 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:739:129,187:177,235:1371 +1 11482832 rs2379144 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:11482832_A_G:651:0,311:94,390:485 +1 11482833 rs2379145 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:11482832_A_G:647:0,307:94,386:485 +1 11482917 rs2379146 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:641:0,307:44,341:347 +1 11483850 rs6540975 T A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:532:95,78:0,0:1638 +1 11484436 rs3010211 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:670:0,300:85,380:417 +1 11484982 rs3099620 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,240:90,321:397 +1 11485455 rs10864507 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:584:128,143:152,165:988 +1 11485666 rs6661145 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:588:131,140:161,160:752 +1 11485693 rs6694633 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:613:140,143:45,31:897 +1 11485719 rs146578751 TTTGTGATTACTG T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:11485719_TTTGTGATTACTG_T:573:137,125:54,27:918 +1 11485740 rs61680889 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:11485719_TTTGTGATTACTG_T:622:150,142:45,29:1008 +1 11486210 rs1072891 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:11486210_C_A:552:126,121:126,121:761 +1 11486211 rs2379147 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:11486210_C_A:549:0,244:0,244:761 +1 11486521 rs716734 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:617:140,144:160,172:822 +1 11486815 rs4846004 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:537:127,110:146,154:914 +1 11486922 rs2922238 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:482:0,206:93,280:481 +1 11487032 rs3010214 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:449:1,175:103,273:471 +1 11487116 rs3099621 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:457:82,108:115,144:810 +1 11487378 rs10779755 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:567:136,108:172,151:972 +1 11487710 rs3123601 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:120,123:157,149:834 +1 11488203 rs2077480 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:572:124,126:148,175:995 +1 11488221 rs2379148 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:593:135,126:176,153:1062 +1 11488397 rs2922239 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:116,117:183,170:1018 +1 11489125 rs3099622 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,247:45,282:328 +1 11489175 rs3123602 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:515:122,113:145,129:758 +1 11489255 rs877307 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:139,119:182,178:1223 +1 11489391 rs877308 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:653:140,145:34,55:816 +1 11489678 rs877309 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:129,125:186,155:752 +1 11489998 rs7413650 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:598:137,117:182,168:1116 +1 11490313 rs2379149 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,232:88,307:426 +1 11493814 rs11121733 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:650:0,280:100,369:499 +1 11493868 rs11121734 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:655:0,309:70,357:441 +1 11494512 rs2379150 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,260:59,310:381 +1 11495019 rs2379153 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,229:80,301:432 +1 11495907 rs3124624 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:548:0,244:61,305:356 +1 11496333 rs12036240 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,266:45,292:342 +1 11496715 rs3010217 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:612:1,261:109,361:520 +1 11497096 rs3099625 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,234:97,314:494 +1 11497230 rs3010218 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,248:0,240:265 +1 11498058 rs3123605 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:655:0,310:57,350:362 +1 11498314 rs3099626 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,270:76,341:403 +1 11499388 rs3099627 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:621:0,283:90,348:500 +1 11499416 rs3099628 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:612:1,283:79,338:425 +1 11500247 rs12132727 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:475:0,204:74,278:365 +1 11500297 rs35316056 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:502:1,217:79,292:413 +1 11500412 rs56050412 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:11500412_T_C:511:0,230:68,290:386 +1 11500413 rs55729299 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:11500412_T_C:512:0,231:68,291:386 +1 11501431 rs11585441 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:120,135:180,178:1222 +1 11501602 rs12048424 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:141,109:155,155:863 +1 11502445 rs3123606 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:416:0,196:28,221:280 +1 11504083 rs2379157 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:146,138:174,164:892 +1 11504417 rs1806619 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:479:106,113:131,128:602 +1 11504452 rs2379158 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:538:110,123:148,153:853 +1 11504514 rs2379159 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:574:128,121:167,158:1122 +1 11505046 rs2922242 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:499:114,98:161,124:640 +1 11505112 rs2922243 T A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:467:96,91:47,45:1276 +1 11505114 rs12046980 C T 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:453:89,93:43,46:1153 +1 11505118 rs57498001 T TG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:432:91,83:49,38:800 +1 11505486 rs3099630 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:454:106,115:106,115:198 +1 11505541 rs34065899 A AG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:406:92,93:0,0:245 +1 11505709 rs9430187 G A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:437:103,95:103,95:198 +1 11505799 rs71568330 G GACAGAGAGACGCAGAGTCAGAA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:420:116,84:0,0:259 +1 11506527 rs3099632 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:137,131:171,161:1092 +1 11507194 rs2922244 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:539:120,127:143,155:797 +1 11507564 rs3010221 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:562:127,125:150,149:608 +1 11507851 rs35621987 T TC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:685:1,333:32,32:368 +1 11508016 rs3124627 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:714:146,171:188,204:1108 +1 11508140 rs3099633 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:115,128:148,144:414 +1 11508538 rs2922245 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,249:47,283:336 +1 11508735 . T TA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:550:0,120,112:48,40,0:1104 +1 11508735 . T TG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:550:0,120,112:48,40,0:1104 +1 11509499 rs2379160 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:492:0,213:75,280:427 +1 11510014 rs3003916 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:556:0,245:77,308:431 +1 11510234 rs3124628 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:613:0,282:76,337:365 +1 11511542 rs56295526 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:468:94,87:38,42:916 +1 11511682 rs12741661 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:537:0,205:117,322:381 +1 11511755 rs6662243 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:446:99,92:133,122:760 +1 11511958 rs35495085 C CTTCG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:520:118,125:25,31:929 +1 11513639 rs4240893 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,244:83,309:467 +1 11514052 rs11121735 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:448:0,220:0,220:164 +1 11514206 rs11121736 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:531:0,239:61,290:394 +1 11514684 rs6697544 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,264:60,308:394 +1 11515132 rs4845865 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:518:0,235:64,284:414 +1 11515435 rs55736129 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:559:114,166:148,132:791 +1 11515560 rs4845866 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:429:0,194:45,239:274 +1 11516244 rs6703959 C G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:440:0,175:74,74:462 +1 11516521 rs11577773 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:514:115,110:146,146:1265 +1 11517430 rs11589539 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:104,122:158,166:1223 +1 11517702 rs11588311 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:543:0,247:86,301:459 +1 11518197 rs12044972 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:128,97:172,151:1041 +1 11518311 rs11121737 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:569:119,133:149,165:683 +1 11518397 rs12026602 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:580:133,125:166,148:789 +1 11518410 rs6540976 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,272:67,313:573 +1 11518432 rs11121738 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:641:161,130:184,165:1108 +1 11518498 rs12026650 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:663:144,158:171,193:1056 +1 11518667 rs28454648 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:617:142,138:182,159:657 +1 11518725 rs12026716 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:127,150:141,171:719 +1 11519216 rs6696039 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:575:0,258:79,324:449 +1 11519390 rs56269753 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:468:104,110:119,136:613 +1 11519483 rs11121739 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:511:122,114:132,143:348 +1 11519780 rs2379161 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:11519780_T_A:604:0,280:55,324:571 +1 11519787 rs2379162 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:11519780_T_A:586:136,128:167,149:574 +1 11520116 rs7551815 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:640:141,156:164,177:1101 +1 11520201 rs12049425 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:131,117:157,147:669 +1 11520584 rs11121741 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:126,127:146,148:749 +1 11520842 rs11121743 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:711:0,328:96,387:553 +1 11520977 rs11121744 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:649:146,144:187,169:874 +1 11521027 rs12029524 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:578:114,135:155,176:1014 +1 11522154 rs35243134 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:137,135:162,157:767 +1 11523099 rs6661084 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:616:0,241:0,241:563 +1 11524150 rs60678357 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:115,118:149,165:849 +1 11524782 rs7534387 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:605:0,286:53,314:420 +1 11525019 rs12757903 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:111,130:152,151:574 +1 11525050 rs187379748 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:123,119:167,146:674 +1 11525067 rs55665801 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:122,121:143,156:625 +1 11525533 rs12046038 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:543:131,102:160,126:612 +1 11526093 rs33994923 GC G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1/1:.:479:0,237:0,0:160 +1 11526768 rs11121747 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:115,131:136,153:608 +1 11526896 rs4846008 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:123,124:142,151:806 +1 11527066 rs7550846 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:114,143:143,182:917 +1 11527118 rs7540777 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:109,141:128,168:494 +1 11529251 rs2002891 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:421:86,92:122,121:742 +1 11530362 . T TATAATAATA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:424:0,108,121:0,0,0:241 +1 11530362 . T TATAATACTA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:424:0,108,121:0,0,0:241 +1 11530595 rs34445294 T TG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:621:148,146:19,21:694 +1 11531059 rs4846010 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:151,118:195,160:1278 +1 11531076 rs7546801 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:123,147:181,199:1689 +1 11531918 rs17036930 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:522:102,117:137,169:827 +1 11532525 rs6674181 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:644:156,149:178,162:854 +1 11533011 rs6674692 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:620:145,142:168,170:780 +1 11533426 rs35931851 T TATA 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:498:8,258:0,0:275 +1 11534053 rs10159458 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:124,124:167,158:841 +1 11534104 rs10158901 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:506:1,247:33,264:317 +1 11534542 rs11121748 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:123,146:146,176:920 +1 11535337 rs7551872 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:617:0,275:96,346:527 +1 11536010 rs12033921 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:724:184,145:55,50:1443 +1 11536807 rs6688359 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:113,129:160,165:917 +1 11537242 rs12742984 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:585:122,123:167,173:1134 +1 11537359 rs12027766 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:141,140:164,160:856 +1 11537977 rs2007215 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:576:131,118:170,155:1302 +1 11538420 rs12124090 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:465:121,99:127,113:502 +1 11539056 rs6540978 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:523:109,121:130,142:483 +1 11539892 rs6695628 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:488:0,222:58,276:335 +1 11540649 rs58130172 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:414:84,95:106,122:632 +1 11540659 rs10864509 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:418:90,84:124,113:736 +1 11540985 rs56373756 AAT A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:418:92,82:43,37:1030 +1 11541120 rs111980045 T TCA 50 PASS platforms=2;platformnames=Illumina,Solid;datasets=3;datasetnames=HiSeqPE300x,SolidPE50x50bp,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.,10,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:306:89,65:0,0:358 +1 11542899 rs11121750 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:125,128:160,169:1300 +1 11545278 rs12030427 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:145,115:175,157:702 +1 11545846 rs2890084 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:697:168,160:41,43:1165 +1 11545862 rs10779756 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:680:158,157:47,47:1220 +1 11547064 rs2379135 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:779:174,173:220,220:1391 +1 11547278 rs2379136 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:126,102:159,137:1033 +1 11547583 rs2379137 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:624:0,272:104,361:508 +1 11548401 rs2379138 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:494:154,134:107,94:947 +1 11549501 rs2379139 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,251:72,312:350 +1 11550193 rs11121752 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:587:157,160:123,138:525 +1 11550632 rs6674713 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:589:0,239:127,356:579 +1 11550881 rs72635482 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:124,109:168,146:996 +1 11551307 rs4846011 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:531:2,231:77,294:419 +1 11551659 rs6669838 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,262:44,306:289 +1 11551816 rs12565837 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:552:132,113:157,135:772 +1 11551897 rs12565184 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:492:113,93:150,122:633 +1 11553382 rs11121753 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:11553382_A_G:626:138,126:0,0:1421 +1 11553389 rs11121754 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:11553382_A_G:631:137,128:0,0:1572 +1 11553456 rs11121755 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:131,124:166,156:1189 +1 11553547 rs11121756 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:516:114,111:132,148:518 +1 11553760 rs10864510 A G 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:160,157:104,110:1012 +1 11553829 rs11121757 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:150,152:109,109:923 +1 11554687 rs7534208 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:484:99,106:141,137:834 +1 11554962 rs11121758 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:601:146,119:170,157:1113 +1 11555373 rs34843061 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:685:153,159:177,188:706 +1 11555404 rs11121759 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:149,148:197,180:746 +1 11555862 rs55975941 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:147,167:171,177:979 +1 11556168 rs10864511 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:662:143,130:186,186:1199 +1 11556348 rs10864512 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:114,119:142,155:704 +1 11556418 rs11582732 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:502:115,122:125,141:645 +1 11556567 rs12139489 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:126,143:166,191:1127 +1 11556597 rs10864513 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:571:111,135:143,180:731 +1 11557926 rs4846012 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:133,133:175,159:1055 +1 11558201 rs7537387 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:105,126:133,169:814 +1 11561593 rs2817580 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:121,118:154,139:757 +1 11562276 rs2076465 C T 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:504:134,148:0,0:704 +1 11562490 rs2235665 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:583:0,245:104,333:519 +1 11564507 rs2817614 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:591:1,271:63,325:388 +1 11565435 rs72635492 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:657:149,155:169,181:983 +1 11566184 rs6702624 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:788:178,169:233,215:1474 +1 11566589 rs2817634 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:794:1,358:99,447:432 +1 11567190 rs2817637 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:676:147,145:191,195:1342 +1 11568462 rs2594312 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:667:0,303:67,363:397 +1 11568632 rs2594313 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:11568632_T_G:899:212,218:238,247:1084 +1 11568636 rs2817645 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:11568632_T_G:885:0,419:74,475:838 +1 11568832 rs2817646 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:811:184,204:215,217:914 +1 11569005 rs2745269 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:786:0,373:87,422:541 +1 11569079 rs2594314 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:823:190,197:211,229:931 +1 11569085 rs2594315 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:834:0,397:80,452:789 +1 11570078 rs61773861 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:625:139,137:168,166:757 +1 11570666 rs59899154 T TTTCAGTGTTTTTTGTTTC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:678:0,317:106,106:385 +1 11570937 rs2745268 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:673:1,310:64,366:387 +1 11571692 rs2594316 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:518:0,251:0,251:237 +1 11572159 rs2745267 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:130,134:149,164:645 +1 11572956 rs2745266 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:643:0,266:112,378:468 +1 11573125 rs10864514 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:140,119:171,148:804 +1 11574005 . GT G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=2;callsetnames=HiSeqPE300xGATK,CGnormal;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:361:60,145,154:0,95,154:652 +1 11574005 . GTT G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=2;callsetnames=HiSeqPE300xGATK,CGnormal;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:361:60,145,154:0,95,154:652 +1 11574009 rs200827164 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:380:174,207:114,157:751 +1 11574366 rs10864515 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:585:128,145:147,162:813 +1 11574942 rs2745265 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:618:141,141:170,171:968 +1 11575081 rs72635500 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:701:144,148:128,135:1671 +1 11575260 rs17036947 G T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:748:129,126:158,165:1129 +1 11575331 rs41274530 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:722:129,108:156,138:1016 +1 11575375 rs2594318 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:687:94,120:135,155:906 +1 11579470 rs2072994 G A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:933:1,266:89,340:553 +1 11579608 rs34563951 G A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:843:131,125:160,155:820 +1 11584628 rs4634914 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:421:0,193:0,0:396 +1 11585601 rs3860317 CTG C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,236:91,91:518 +1 11593640 rs2745297 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:1,235:81,301:410 +1 11593793 rs113116961 T TGCACACACGCAC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:488:0,205:0,0:308 +1 11601318 rs71568338 C CTCTG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:154,154:32,29:693 +1 11607126 rs72636812 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:132,129:173,168:1219 +1 11608460 rs57480505 AT A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:374:86,90:69,75:222 +1 11621290 rs72636819 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:103,128:163,183:1418 +1 11635673 rs2817588 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:566:136,126:31,25:725 +1 11635712 rs2745281 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:536:133,114:33,32:868 +1 11636244 rs2745280 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:689:154,162:183,188:912 +1 11637407 rs2745277 C A 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:496:122,157:94,118:710 +1 11637456 rs34120787 CCACACA C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:317:73,89:73,89:198 +1 11638084 rs6698664 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:130,118:153,145:1006 +1 11639607 rs34211686 A AG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:624:137,157:20,10:449 +1 11640201 rs2817638 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:476:119,94:137,113:685 +1 11641802 rs61773880 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:134,132:193,180:1110 +1 11642386 rs2817640 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:11642386_A_G:511:102,95:102,95:557 +1 11642409 rs2817641 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11642386_A_G:545:108,109:145,143:813 +1 11642544 rs2206514 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:453:87,83:52,45:1117 +1 11642595 rs2206513 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:380:80,70:27,22:666 +1 11642800 rs2206512 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:733:174,145:221,194:1419 +1 11643946 rs4846014 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:459:100,106:123,130:880 +1 11644173 rs2817642 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:614:131,140:183,165:968 +1 11646590 rs61773881 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:672:164,135:191,179:1099 +1 11647177 rs61773882 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:622:120,133:116,128:1569 +1 11647232 rs2745273 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:112,117:152,163:950 +1 11647803 rs11587747 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:117,146:136,173:1108 +1 11647939 rs11578177 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:11647939_C_T:500:113,117:33,29:1003 +1 11647942 rs2745272 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:11647939_C_T:506:116,115:36,31:995 +1 11648200 rs11589841 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:127,133:154,155:898 +1 11648488 rs1811837 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:132,101:185,132:870 +1 11648605 rs1811836 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:526:115,112:30,32:740 +1 11649098 rs4845868 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:608:146,136:153,167:1051 +1 11649468 rs72636845 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:718:161,149:60,41:1123 +1 11649886 rs72636847 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:132,116:179,158:1301 +1 11650020 rs11121774 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:127,146:158,187:1004 +1 11651218 rs1989276 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:565:0,254:0,254:246 +1 11651253 rs1989275 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:580:134,125:134,125:379 +1 11651494 rs5772460 ATAC A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:556:0,266:52,52:438 +1 11652029 rs727853 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:531:0,242:50,290:315 +1 11652205 rs2335767 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:643:134,150:174,192:1234 +1 11652494 rs4846015 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:571:122,123:159,167:937 +1 11652572 rs141700064 AAAC A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:498:0,257:0,0:248 +1 11653480 rs2072999 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:565:0,247:83,322:440 +1 11653565 rs2076466 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:488:112,104:140,130:657 +1 11653678 rs11801364 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:571:119,118:159,149:985 +1 11654009 rs2072998 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,279:82,352:425 +1 11654257 rs12026955 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:449:94,94:130,128:782 +1 11654491 rs7530509 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,238:63,295:379 +1 11654549 rs12403277 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:138,93:174,133:1121 +1 11655069 rs4364885 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:495:106,85:158,147:1243 +1 11655186 rs4240894 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:580:132,121:164,162:1125 +1 11655336 rs4625284 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:494:111,105:140,137:1010 +1 11655410 rs4525043 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:11655410_A_C:464:98,109:25,25:673 +1 11655417 rs11811739 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:11655410_A_C:469:98,107:26,26:636 +1 11655439 rs4262549 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:11655439_C_G:475:104,107:31,19:678 +1 11655442 rs4356057 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:11655439_C_G:478:106,107:32,19:646 +1 11655923 rs11121775 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:11655923_T_C:562:129,129:154,152:695 +1 11655935 rs2018754 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|0:11655923_T_C:546:130,122:146,148:538 +1 11656130 rs12094882 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11656130_T_A:606:131,127:177,160:1095 +1 11656132 rs12094883 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11656130_T_A:609:134,127:180,160:1095 +1 11656256 rs6670331 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:11656256_C_T:541:130,124:141,141:352 +1 11656263 rs6685524 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:11656256_C_T:536:129,112:144,136:374 +1 11656359 rs113551358 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:617:150,145:166,155:385 +1 11656564 rs10864526 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:586:142,151:140,163:570 +1 11656589 rs6694271 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:650:156,158:175,164:728 +1 11656684 rs761087 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:143,132:164,146:784 +1 11656824 rs28584750 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:477:115,108:130,120:673 +1 11657199 rs1812980 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:482:0,223:48,271:321 +1 11657283 rs973880 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:469:0,219:36,253:294 +1 11657579 rs761086 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:531:89,316:0,223:280 +1 11658253 rs2072992 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:534:1,238:71,301:393 +1 11659116 rs761085 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:629:0,285:73,348:431 +1 11660710 rs761084 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:681:0,318:71,370:442 +1 11661065 rs4585980 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:613:0,287:47,334:300 +1 11661209 rs1997761 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:450:0,213:37,242:326 +1 11661317 rs1997760 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:547:1,243:83,307:458 +1 11661474 rs1997759 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:465:0,205:63,263:311 +1 11661509 rs1997758 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:498:0,215:83,284:460 +1 11661965 rs6693599 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:446:0,197:80,264:459 +1 11662760 rs4846017 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:575:0,265:64,310:421 +1 11663083 rs11121777 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:708:0,313:119,405:606 +1 11663768 rs2018893 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:511:0,197:83,280:405 +1 11664013 rs761082 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:548:0,226:51,277:317 +1 11664197 rs761081 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:651:0,309:58,340:435 +1 11664474 rs4846018 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,263:56,311:378 +1 11664772 rs7555966 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:706:1,309:94,399:458 +1 11664921 rs7548225 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1|1:11664921_T_C:615:91,362:0,271:313 +1 11664922 rs7556068 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1|1:11664921_T_C:615:91,362:0,271:313 +1 11664955 rs7548235 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:11664921_T_C:560:0,241:82,323:385 +1 11665198 rs11121778 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,282:76,331:487 +1 11665575 rs4846019 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:648:0,284:88,364:445 +1 11666034 rs1967682 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:683:0,288:119,394:496 +1 11667131 rs6664819 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:626:0,296:61,334:433 +1 11668829 rs11121779 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,275:49,324:322 +1 11669059 rs4845869 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:509:0,241:0,241:264 +1 11669329 rs7417346 T G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:11669329_T_G:511:0,255:0,255:198 +1 11669335 rs2745270 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:11669329_T_G:541:28,282:0,254:263 +1 11669774 rs10779758 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:631:0,294:45,339:302 +1 11669956 rs1320985 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,244:56,300:313 +1 11670025 rs1320984 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:11670025_C_T:553:0,255:51,303:344 +1 11670046 rs1320983 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:11670025_C_T:535:0,248:46,291:309 +1 11670729 rs909946 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:585:0,261:72,324:401 +1 11670959 rs4542213 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,274:61,335:336 +1 11671074 rs4361989 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,274:55,325:326 +1 11671342 rs909945 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:728:0,341:74,388:473 +1 11672089 rs72636881 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:121,128:160,157:868 +1 11672407 rs6689128 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:570:1,255:85,321:466 +1 11672501 rs6704310 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,260:61,310:385 +1 11672609 rs6664324 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:625:1,286:76,343:464 +1 11673566 rs35766968 T TG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:616:0,273:85,85:474 +1 11674200 rs2017006 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:529:0,235:73,301:399 +1 11675025 rs742474 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,249:105,354:340 +1 11675059 rs734737 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:625:0,274:100,353:504 +1 11675310 rs11121780 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:550:0,268:37,283:362 +1 11675530 rs11121781 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:567:0,255:64,314:378 +1 11675874 rs10864527 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,246:60,306:314 +1 11676100 rs7554745 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:571:0,255:78,325:422 +1 11676287 rs6540984 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:543:0,242:77,308:437 +1 11677212 rs4845870 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:487:120,110:135,122:555 +1 11678195 rs761092 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:671:138,151:184,193:1340 +1 11678869 rs4845871 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:651:154,142:182,174:1158 +1 11678938 rs4845872 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:137,123:172,169:1401 +1 11679125 rs10779759 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:485:110,104:150,122:730 +1 11680099 rs7519607 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:120,138:150,176:941 +1 11680229 rs55909012 C CACT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:132,115:41,29:745 +1 11680283 rs7550768 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:588:138,131:159,160:1285 +1 11681201 rs10779760 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:154,133:193,182:1271 +1 11681568 rs6701965 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:662:138,136:122,123:1635 +1 11683792 rs12759089 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:146,125:179,152:935 +1 11684805 rs3040474 T TCA 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:563:131,138:131,138:150 +1 11685569 rs742476 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:118,120:151,171:977 +1 11685725 rs742475 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:539:118,119:161,140:841 +1 11686768 rs10779761 T G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:622:156,118:62,36:1181 +1 11686772 rs146617387 C CTAT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:591:135,112:62,41:849 +1 11687018 rs2064297 T A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:644:134,132:51,55:1361 +1 11687045 rs4440857 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:11687045_G_A:603:131,135:26,34:794 +1 11687066 rs2064296 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:11687045_G_A:587:129,130:23,33:651 +1 11688387 rs4846021 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:722:142,157:195,224:857 +1 11690563 rs6661641 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:508:110,109:140,139:853 +1 11690766 rs10779763 A C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:374:57,76:22,44:784 +1 11691161 rs2335768 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:133,122:150,144:817 +1 11691461 rs11121786 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:131,117:145,135:728 +1 11691686 rs3117070 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:426:0,190:74,239:479 +1 11694368 rs6677946 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:571:141,124:160,147:718 +1 11694930 rs11121787 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11694930_G_A:579:143,129:21,15:626 +1 11694938 rs33940890 C CT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11694930_G_A:586:150,121:25,22:679 +1 11695103 rs11121788 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:592:151,138:158,144:524 +1 11695180 rs10864529 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:582:140,126:175,139:749 +1 11695455 rs11121789 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:465:103,101:115,118:423 +1 11695853 rs4483414 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:472:119,92:135,113:480 +1 11695956 rs4636464 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11695956_C_T:534:138,107:155,134:575 +1 11695968 rs4261122 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11695956_C_T:531:140,105:160,124:522 +1 11696836 rs10864530 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:126,126:171,151:568 +1 11697098 rs6685318 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:706:156,154:201,192:1342 +1 11697182 rs4846022 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:552:113,124:156,158:981 +1 11698902 rs6671295 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:486:92,93:138,125:1150 +1 11699817 rs139538428 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:588:118,139:29,38:804 +1 11702082 rs6540986 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:143,158:179,204:1202 +1 11702155 rs7526268 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:659:148,151:162,204:759 +1 11702990 rs6672629 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:599:0,272:57,327:353 +1 11703843 rs6540987 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:11703843_A_G:543:0,239:92,316:367 +1 11703866 rs6688569 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:11703843_A_G:576:122,140:153,165:1001 +1 11704658 rs12737362 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:503:100,113:122,118:717 +1 11705796 rs56104140 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:178,185:132,129:1072 +1 11706236 rs72638613 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:109,138:151,160:901 +1 11706478 rs72638614 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:504:110,109:133,145:889 +1 11707589 rs78799062 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:489:102,114:132,142:654 +1 11708736 rs1055547 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:86,99:102,123:482 +1 11709029 . T TCAGCC 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:162:0,0:0,0:146 +1 11709052 . C G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:197:0,0:0,0:160 +1 11709339 rs2272984 C T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:367:104,75:104,75:198 +1 11711589 rs3117061 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:578:129,121:171,159:1178 +1 11713563 rs909934 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:482:114,99:142,123:954 +1 11714368 rs2272983 T G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:514:116,110:20,25:493 +1 11714793 rs4478814 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:493:124,95:137,107:356 +1 11714883 rs5772465 G GGCGGGGC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:391:103,76:0,0:247 +1 11714938 rs4341365 T C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:390:0,162:0,162:198 +1 11714981 rs7514966 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:328:0,133:0,0:198 +1 11715017 rs113474282 G A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:287:67,46:0,0:198 +1 11716521 rs35902161 AT A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:400:102,95:76,84:293 +1 11716755 rs56052340 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:120,129:143,154:641 +1 11718195 rs3125816 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:495:101,97:144,144:973 +1 11719438 rs3117063 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:713:9,343:2,300:858 +1 11719592 rs72638619 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:773:165,194:188,224:895 +1 11721693 rs2294642 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:116,124:152,167:1113 +1 11721833 rs3215522 CCT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:476:99,117:25,16:451 +1 11721854 rs2294641 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,225:61,61:430 +1 11721949 rs2294640 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:485:100,112:120,145:705 +1 11722688 rs3125815 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:107,138:154,180:956 +1 11723520 rs3820340 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:532:123,103:162,132:757 +1 11723885 rs3125814 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:653:141,137:194,179:932 +1 11724092 rs3125813 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:605:0,279:53,329:358 +1 11724938 rs3125812 A C 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1|1:11724938_A_C:452:15,238:0,223:216 +1 11724948 rs3125811 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1|1:11724938_A_C:434:17,230:0,213:209 +1 11725206 rs3117064 T A 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:393:11,191:0,0:280 +1 11725436 rs3117065 T C 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:396:27,209:0,182:263 +1 11725718 rs12145133 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:341:19,156:1,138:226 +1 11725747 rs145692708 A T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:364:86,73:86,73:198 +1 11726326 rs3117067 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,218:61,275:370 +1 11726499 rs3117068 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:470:1,188:37,224:278 +1 11726682 rs3125819 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:491:101,116:127,138:625 +1 11726934 rs3117069 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:448:97,95:123,121:677 +1 11727656 rs5772466 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:447:111,91:15,18:426 +1 11727920 rs1985120 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:125,116:145,147:562 +1 11728894 rs3125818 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:886:152,129:178,156:675 +1 11729662 rs9430594 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:784:176,194:194,212:448 +1 11729720 . C CATGTATAT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/0:.:280:0,0,0:0,0,0:156 +1 11729722 . T TGTATATATAC 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:280:0,0,0:0,0,0:156 +1 11729794 . T TAC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:494:4,104,130:0,0,0:259 +1 11729794 . T TACAC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:494:4,104,130:0,0,0:259 +1 11731177 rs744115 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:130,107:170,144:879 +1 11731927 rs3215521 AG A 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:414:91,99:19,15:285 +1 11732509 rs144280236 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:511:120,97:33,33:482 +1 11732932 rs747863 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:136,109:146,133:582 +1 11733075 rs747862 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:613:129,123:196,163:1076 +1 11734049 rs1063301 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:622:145,136:174,169:1006 +1 11734084 rs28924117 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:588:130,139:157,166:733 +1 11734293 rs1140272 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:641:136,153:157,176:606 +1 11735262 rs2233027 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:122,122:164,152:689 +1 11735377 rs2272982 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:519:0,222:80,300:314 +1 11735652 rs2233025 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:514:113,108:147,143:718 +1 11735841 rs2233024 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:115,125:131,155:573 +1 11735877 rs2233022 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:127,118:138,142:517 +1 11736410 rs3767300 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:554:0,237:100,320:480 +1 11737051 rs2294638 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,242:56,286:331 +1 11738325 rs9430205 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:586:1,243:95,337:437 +1 11738979 rs6698476 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:648:148,152:174,169:499 +1 11739152 rs7545621 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:758:179,169:203,200:672 +1 11739336 rs7553579 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:11739336_G_A:791:180,185:216,207:846 +1 11739358 rs7553585 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:11739336_G_A:806:0,378:73,442:439 +1 11739632 rs72638627 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:688:153,161:24,25:576 +1 11740358 rs7417320 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,252:94,337:449 +1 11740812 rs2272981 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:140,136:173,161:603 +1 11741304 rs2272978 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:135,112:170,137:520 +1 11741506 rs2233011 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:135,107:155,135:463 +1 11742074 rs2233004 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,252:111,346:407 +1 11743073 rs28924089 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:127,127:188,172:961 +1 11743124 rs746218 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:116,124:144,168:842 +1 11743571 rs909933 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:605:131,132:167,169:1110 +1 11744212 rs34873013 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11744212_C_T:465:104,90:142,122:942 +1 11744218 rs12723707 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:11744212_C_T:444:89,102:116,132:854 +1 11744360 rs67654234 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:584:128,130:41,44:1058 +1 11744797 rs11121796 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:130,125:147,145:1004 +1 11744985 rs60300457 CT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:444:104,120:86,102:314 +1 11745196 rs7527599 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:126,107:150,141:708 +1 11745342 rs12069516 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:712:162,169:192,183:840 +1 11745459 rs2336031 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,278:89,353:489 +1 11746500 rs2143296 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:633:135,137:176,181:984 +1 11750986 rs57223755 AGT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:499:117,114:0,0:282 +1 11753814 rs2038132 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:406:79,78:121,127:1153 +1 11754168 rs7539455 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:452:0,183:100,274:517 +1 11754491 rs55686624 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:543:113,110:155,165:1072 +1 11755018 rs72638643 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:585:126,127:170,171:1183 +1 11757174 rs61773913 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:119,121:145,146:797 +1 11758519 rs6658124 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:465:100,93:136,128:816 +1 11760782 rs1555079 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:567:126,124:161,158:907 +1 11761252 rs1534991 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:114,124:144,166:639 +1 11761468 rs1534990 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:682:182,142:206,152:512 +1 11761503 rs1534989 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:731:164,157:212,201:1341 +1 11761714 rs1534988 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:134,151:150,165:404 +1 11761824 rs1534987 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:114,119:144,139:594 +1 11761944 rs1555078 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:146,125:166,165:771 +1 11766069 rs6685326 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:523:103,105:131,134:988 +1 11766889 rs12132907 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:504:102,118:125,145:876 +1 11767122 rs4845873 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:534:105,113:139,163:771 +1 11767938 rs12134785 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:125,143:157,161:502 +1 11768869 rs6687381 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:122,149:167,173:583 +1 11770039 rs12118130 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:119,122:136,139:508 +1 11770738 rs2878594 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:512:114,90:126,112:413 +1 11771988 rs17037327 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:689:126,131:165,175:1458 +1 11772303 rs1883574 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:650:147,154:176,171:759 +1 11772340 rs2336034 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:737:155,153:189,179:1038 +1 11774582 rs72638650 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:137,143:181,180:1136 +1 11776196 rs35307526 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:140,115:180,139:623 +1 11778084 rs61773926 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:452:127,101:0,0:786 +1 11779499 rs4846028 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:544:0,239:84,310:467 +1 11779762 rs12117076 C T 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:734:136,106:40,40:936 +1 11780388 . G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:117,125:154,158:795 +1 11781134 rs12735660 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:635:154,141:170,170:770 +1 11781768 rs6665105 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:501:0,224:58,275:366 +1 11781973 rs6676319 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:125,91:152,135:719 +1 11782506 rs34219540 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:156,143:164,179:666 +1 11782781 rs7533583 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:716:165,146:201,176:1085 +1 11782814 rs7414943 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:673:132,136:186,179:943 +1 11782886 rs6540990 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:465:90,231:5,146:323 +1 11783295 rs7415462 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:579:145,130:155,149:614 +1 11783451 rs4845874 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:546:126,122:125,120:398 +1 11783484 rs4846029 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:560:139,121:137,116:443 +1 11783776 rs4846030 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:151,130:176,162:964 +1 11784118 rs7529001 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:693:144,171:180,200:902 +1 11784986 rs4846031 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:603:0,274:86,333:497 +1 11785403 rs4846032 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:699:165,113:165,113:1464 +1 11786370 rs113700992 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:91,117:29,33:808 +1 11788048 rs12120698 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:667:154,138:190,183:834 +1 11788564 rs4846033 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:615:0,290:58,326:358 +1 11788763 rs33999366 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:646:135,135:179,191:1194 +1 11788875 rs59565686 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:554:106,136:33,41:973 +1 11789783 rs35818156 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:442:78,95:108,135:775 +1 11790371 rs111750283 G GCA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:336:69,85:0,0:245 +1 11790386 rs61773930 A C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11790386_A_C:358:94,73:0,0:244 +1 11790450 rs34860946 T C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11790386_A_C:365:99,76:99,76:198 +1 11790462 rs4846034 T C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:367:0,184:0,184:198 +1 11790584 rs12142522 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:531:113,112:148,153:1109 +1 11790687 rs10864532 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:125,122:167,150:986 +1 11791054 rs12123921 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:516:107,122:141,143:596 +1 11791168 rs12142649 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:108,124:151,165:953 +1 11791907 rs57315755 CTTTT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:482:91,102:55,34:983 +1 11791937 rs7529718 G C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:445:0,184:62,62:328 +1 11792655 rs7524867 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:526:0,239:55,289:364 +1 11793299 rs12408896 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:694:0,327:66,366:441 +1 11796931 rs143919633 CGGGTCT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:112,113:29,25:751 +1 11797186 rs12095517 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:750:167,156:155,148:1512 +1 11798735 rs17875916 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:118,115:146,155:997 +1 11798812 rs6419478 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,236:87,301:508 +1 11799228 rs6540992 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:631:132,120:119,115:1433 +1 11800048 rs11121815 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:529:112,118:28,36:704 +1 11800521 rs6664239 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:553:126,123:148,155:798 +1 11800703 rs4073395 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:115,123:146,168:1076 +1 11801087 rs11121817 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:484:94,98:132,152:1164 +1 11802434 rs4073574 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:607:152,141:151,166:765 +1 11802498 rs147888116 GTTCCTTCC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:469:112,102:0,0:310 +1 11802731 rs6419479 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:561:130,110:174,145:865 +1 11802745 rs6419480 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,246:94,338:544 +1 11802867 rs4073576 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:576:131,130:152,162:746 +1 11802951 rs4073575 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:136,131:184,174:1139 +1 11803696 rs4846035 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:463:2,194:38,230:289 +1 11806851 rs6660106 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:679:166,133:194,182:1273 +1 11807426 rs12752700 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:129,128:163,157:935 +1 11809735 rs10864533 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:477:98,98:141,138:930 +1 11809845 rs6677313 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:114,122:135,158:682 +1 11810505 rs8617 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:642:133,140:171,195:909 +1 11810674 rs1128059 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:11810674_G_A:578:122,132:160,158:649 +1 11810691 rs1128065 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:11810674_G_A:592:124,133:162,167:869 +1 11810765 rs6540993 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,252:78,327:403 +1 11810844 rs11121821 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:683:143,157:184,197:1049 +1 11811021 rs17875965 GGA G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:109,126:29,26:423 +1 11811234 rs4075033 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:662:151,147:46,37:906 +1 11811283 rs11802026 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:585:120,140:32,31:758 +1 11811784 rs17875969 G A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:457:106,119:106,119:198 +1 11812035 rs10864534 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:128,118:168,158:865 +1 11813090 rs17875978 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:492:118,97:149,114:484 +1 11813389 rs6703047 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:114,142:148,178:810 +1 11813784 rs56092270 A C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:510:112,109:158,131:645 +1 11814216 rs11121822 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:642:167,121:184,165:1089 +1 11814631 rs1133398 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:138,136:192,161:872 +1 11815364 rs6661241 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:666:148,136:197,185:1208 +1 11816673 rs12563343 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:657:208,184:126,126:1266 +1 11817104 rs6540994 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:623:0,292:59,337:358 +1 11817950 . CGT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:211:49,49:49,49:99 +1 11819596 rs60148251 C T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:573:141,158:141,158:198 +1 11819640 rs71647007 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:560:132,139:132,139:268 +1 11821341 rs4846036 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:148,127:195,152:863 +1 11822734 rs11121824 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:532:130,112:149,139:772 +1 11823273 rs10158409 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:484:103,101:137,130:728 +1 11824133 rs4845875 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:523:108,125:132,159:912 +1 11824242 rs4845876 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:129,122:153,147:819 +1 11824303 rs4845877 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:573:125,121:48,33:831 +1 11824346 rs4845878 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:582:111,134:54,42:1013 +1 11824556 rs4845879 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11824556_A_G:554:109,123:156,167:1023 +1 11824575 rs10864536 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11824556_A_G:534:111,129:139,165:707 +1 11824578 rs11121825 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11824556_A_G:527:109,132:133,164:718 +1 11824621 rs11121826 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:483:103,120:125,136:519 +1 11824927 rs6677253 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:479:0,199:79,278:398 +1 11825014 rs6674634 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:392:0,136:78,78:380 +1 11825059 rs6662190 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:295:0,93:47,47:384 +1 11825640 rs35770710 C CA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:529:1,232:76,76:412 +1 11825851 rs10218813 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:441:0,200:44,244:302 +1 11826630 rs6668699 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:468:0,216:41,254:307 +1 11827180 rs6540995 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:458:0,207:41,242:307 +1 11827304 rs6540996 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:488:0,225:53,269:352 +1 11827355 rs6540997 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:497:0,235:0,223:304 +1 11827776 rs4846037 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:552:0,267:29,294:316 +1 11827796 rs145488887 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:565:116,139:142,167:647 +1 11827832 rs4846038 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:543:0,254:46,300:323 +1 11828238 rs4845880 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,239:90,329:378 +1 11828319 rs4845881 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:578:0,272:54,314:376 +1 11831244 rs114951726 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:449:117,88:117,88:301 +1 11831303 rs72638683 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:473:123,96:16,13:343 +1 11831354 rs146737787 T TA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:500:124,103:17,21:440 +1 11831543 rs72638684 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:546:122,122:151,142:663 +1 11831615 rs6667720 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:427:1,193:53,236:362 +1 11831756 rs6680385 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:507:0,232:53,282:341 +1 11831875 rs55929441 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:153,125:197,155:732 +1 11832100 rs11121827 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:626:144,132:186,168:1132 +1 11832311 rs10779764 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:126,141:158,166:731 +1 11832488 rs35110327 AT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:578:0,251:72,72:432 +1 11832987 rs55990055 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:552:158,142:0,0:626 +1 11833095 rs11809568 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:533:116,134:116,134:364 +1 11833147 rs11804825 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:11833147_A_G:510:15,261:0,246:233 +1 11833159 rs11805138 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:11833147_A_G:506:12,258:0,246:231 +1 11833366 rs6540999 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:658:154,158:164,177:628 +1 11833491 rs6541000 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:612:143,136:143,136:526 +1 11833525 rs12079693 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:572:134,136:134,136:370 +1 11833562 rs12076233 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:496:0,244:0,244:249 +1 11833720 rs10864538 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:145,144:171,168:613 +1 11833856 rs72638693 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:809:170,188:221,219:970 +1 11833910 rs10864539 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:780:185,160:233,196:1319 +1 11834107 rs6689912 A C 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:649:66,361:0,295:470 +1 11834163 rs12735869 C T 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:11834163_C_T:651:193,186:132,137:1287 +1 11834182 rs12734761 G A 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:11834163_C_T:585:157,162:128,130:718 +1 11834454 rs11121828 G A 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:658:197,181:137,141:874 +1 11834709 rs72638696 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:124,110:160,135:739 +1 11834765 rs11121829 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:509:0,233:60,277:380 +1 11835070 rs113980419 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:117,132:158,166:773 +1 11835089 rs9792894 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:11835089_T_C:567:0,251:68,319:404 +1 11835111 rs9794014 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:11835089_T_C:550:0,251:47,298:276 +1 11835187 rs61464741 CA C 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,246:46,46:266 +1 11835455 rs72638698 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:697:159,153:205,172:870 +1 11835556 rs41275456 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:132,123:162,152:659 +1 11835935 rs6696752 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:544:1,248:66,301:394 +1 11836037 rs72638700 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:537:120,104:162,138:871 +1 11836183 rs6659287 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:116,120:149,159:713 +1 11836233 rs141567582 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:138,114:168,138:668 +1 11836441 rs6699669 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:11836441_T_C:515:0,241:17,259:560 +1 11836442 rs6659541 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:11836441_T_C:508:108,126:132,143:542 +1 11836628 rs6699881 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:492:0,233:0,233:268 +1 11836670 rs41275458 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:541:114,114:114,114:962 +1 11836682 rs7538516 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:119,113:154,151:891 +1 11836868 rs4846039 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:612:0,284:50,334:296 +1 11837048 rs4846040 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:11837048_C_G:523:0,240:50,287:308 +1 11837051 rs4846041 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:11837048_C_G:525:0,240:52,289:334 +1 11837299 rs4846042 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:477:0,233:34,254:322 +1 11837367 rs6541001 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:482:104,122:131,127:716 +1 11837473 rs6688187 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:501:102,118:122,154:558 +1 11837581 rs148411205 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:496:98,105:131,151:669 +1 11837649 rs112131579 A C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:450:99,86:31,28:801 +1 11837682 rs72640206 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:485:99,80:49,56:1229 +1 11837757 rs72640208 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:106,113:144,133:551 +1 11838011 rs10779765 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:483:0,209:73,275:375 +1 11838099 rs10864540 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:497:0,227:0,223:274 +1 11838264 rs10864541 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:438:0,165:61,226:356 +1 11838451 rs55738118 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:460:93,89:121,123:629 +1 11838516 rs56260590 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:510:123,107:148,134:634 +1 11838696 rs72640210 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:477:118,106:134,123:438 +1 11838762 rs72640211 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:519:133,113:150,130:448 +1 11838841 rs56001051 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:550:134,120:158,134:574 +1 11838848 rs6697244 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:537:115,131:125,157:391 +1 11839009 rs55685198 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:532:116,117:146,151:755 +1 11839034 rs55967531 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:491:101,107:137,140:757 +1 11839201 rs41307759 T A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:429:71,80:43,49:1052 +1 11839226 rs41307757 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:425:92,92:19,19:540 +1 11839435 rs10779766 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:588:1,273:58,316:392 +1 11839792 rs12566905 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:574:131,110:41,46:994 +1 11839923 rs12561919 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:505:112,99:153,133:804 +1 11839966 rs4846043 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:513:109,118:133,147:541 +1 11839998 rs4846044 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:502:0,217:69,286:288 +1 11840380 rs4846045 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:585:137,136:164,153:690 +1 11840428 rs4846046 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:567:0,270:56,308:405 +1 11840483 rs1106409 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,233:53,277:349 +1 11840862 rs1889293 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:411:0,195:46,217:395 +1 11840943 rs1889292 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:418:98,70:36,31:920 +1 11840978 rs150165613 GAGGGATGGTCCC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:363:55,80:44,27:744 +1 11841124 rs3737970 G A 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:309:68,89:0,0:645 +1 11841351 rs2001584 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:459:91,111:119,140:696 +1 11841366 rs2004445 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:498:104,114:139,142:860 +1 11841881 rs112862994 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:509:89,122:127,149:749 +1 11841921 rs6699157 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:482:0,201:0,0:629 +1 11841922 rs139348312 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:481:90,110:0,0:629 +1 11841945 rs9727993 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:505:111,94:0,0:455 +1 11842144 rs10864542 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:482:116,108:135,122:533 +1 11843167 rs4845882 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:132,128:166,158:940 +1 11843632 rs4846047 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:583:0,266:49,311:326 +1 11843683 rs6665802 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:619:131,152:156,177:811 +1 11843919 rs6703535 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:681:206,176:163,129:980 +1 11844330 rs10864543 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:629:132,150:158,183:749 +1 11844737 rs55890341 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:157,138:199,172:905 +1 11844827 rs4845883 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:543:0,250:41,287:322 +1 11845113 rs11587953 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:594:0,282:0,282:250 +1 11845167 rs55820567 TTTA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:592:138,125:35,29:791 +1 11845222 rs55867221 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:575:131,123:131,123:435 +1 11845518 rs2151655 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:11845518_G_C:612:0,278:58,336:461 +1 11845524 rs2151654 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:11845518_G_C:610:141,133:171,167:693 +1 11846252 rs4846048 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:673:1,322:47,351:357 +1 11846447 rs4845884 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:700:0,310:96,387:467 +1 11846742 rs2184227 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:126,127:150,148:568 +1 11847334 rs70983598 G GGAA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:124,127:39,36:787 +1 11847759 rs3737966 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:162,132:207,166:1090 +1 11847772 rs3820192 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:646:138,161:156,196:695 +1 11847861 rs1537516 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:122,142:145,177:572 +1 11847902 rs1537515 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:128,132:164,160:975 +1 11848068 rs1537514 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:611:142,120:186,161:1019 +1 11848879 rs2077360 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:585:1,274:56,321:358 +1 11848972 rs72640221 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:676:158,144:192,182:951 +1 11849447 rs868014 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,260:85,343:407 +1 11850365 rs4846049 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:104,110:156,160:1173 +1 11851003 rs3818762 G C 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:729:123,120:153,167:1088 +1 11851118 rs7518348 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:458:0,219:31,243:307 +1 11851950 rs6700268 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:471:1,204:75,271:404 +1 11852110 rs13306556 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:492:103,106:126,152:1132 +1 11852300 rs1476413 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:127,132:166,174:1092 +1 11852516 rs17375901 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:718:146,147:172,185:1188 +1 11852969 rs4846050 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:578:0,274:55,317:347 +1 11853206 rs5772477 C CT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:312:49,74:49,74:99 +1 11853599 rs7535669 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:423:0,171:45,216:318 +1 11854457 rs4846051 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:11854457_G_A:580:0,251:95,338:555 +1 11854476 rs1801131 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11854457_G_A:607:129,120:187,172:1464 +1 11854671 rs12121543 C A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:725:136,107:179,136:913 +1 11854755 rs1994798 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:698:124,127:161,172:1283 +1 11854896 rs2066462 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_IonExomeTVC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:733:120,138:154,167:926 +1 11855867 rs6541003 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:127,163:179,206:1151 +1 11856084 rs45439601 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:600:174,193:114,123:1166 +1 11856378 rs1801133 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:786:115,130:176,193:1422 +1 11856821 rs7545331 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,269:89,345:478 +1 11857240 rs7526128 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:423:112,123:0,0:1202 +1 11857381 rs6541004 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:534:0,242:50,292:324 +1 11857410 rs7537955 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,273:53,326:343 +1 11857951 rs4846052 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:675:166,139:206,166:963 +1 11858036 rs17037388 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:633:151,146:168,164:671 +1 11858324 rs17421560 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:781:179,155:237,202:1368 +1 11858363 rs72640233 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:716:155,164:197,196:776 +1 11858672 rs4845885 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:776:0,368:74,409:508 +1 11858957 rs45553335 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:129,121:177,169:994 +1 11859701 rs3766747 T G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:444:105,152:68,102:770 +1 11859909 rs7527897 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,230:63,293:359 +1 11860117 rs13306553 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:11860117_A_G:466:105,94:139,133:824 +1 11860120 rs11121832 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:11860117_A_G:463:0,201:68,266:750 +1 11860683 rs7533315 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:537:0,235:77,298:442 +1 11860807 rs35464336 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:584:135,123:131,119:864 +1 11860843 rs17037390 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:579:135,121:135,121:433 +1 11861855 rs45603435 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:113,88:154,131:952 +1 11862047 rs17037396 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:534:140,83:41,32:988 +1 11862533 rs45589544 TA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:147,143:19,21:580 +1 11862764 rs55645287 C CT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:123,124:31,35:803 +1 11862778 rs17367504 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:127,131:44,28:753 +1 11863057 rs2066470 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:674:122,140:154,165:915 +1 11863904 rs3753588 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:611:133,145:159,169:939 +1 11864149 rs7553194 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:151,149:173,185:841 +1 11864586 rs3753584 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:704:153,149:197,182:811 +1 11865063 rs3834045 ATTGC A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:143,120:34,18:642 +1 11865236 rs17367629 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:747:171,165:41,42:1148 +1 11865284 rs3834044 A AC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:658:144,165:22,28:642 +1 11865542 rs3753582 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:501:104,118:141,140:529 +1 11865804 rs13306561 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:120,120:34,28:719 +1 11865816 rs3834043 G GC 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:494:118,101:27,17:266 +1 11867044 rs3737964 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:702:0,318:83,386:406 +1 11867737 rs56221660 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:696:156,169:183,192:917 +1 11868511 rs55814225 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:693:138,174:178,207:1422 +1 11868780 rs57441762 A AC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:126,124:35,36:1077 +1 11869022 rs6697335 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:136,121:160,149:695 +1 11869101 rs6691440 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11869101_T_C:574:120,123:159,163:1076 +1 11869110 rs6699827 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11869101_T_C:576:130,120:168,151:868 +1 11869230 rs4846054 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:646:137,147:180,180:947 +1 11869515 rs4846055 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:74,295:0,221:369 +1 11869578 rs4846056 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,207:61,61:351 +1 11869616 rs114540413 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:505:82,98:32,41:865 +1 11869653 rs145641960 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:528:102,96:44,36:813 +1 11869850 rs72640243 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11869850_G_C:712:148,162:209,204:1197 +1 11869853 rs72640244 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11869850_G_C:704:152,165:203,202:1190 +1 11870133 rs55851065 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:737:169,171:190,201:1028 +1 11870383 rs17037425 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:761:161,177:201,223:1254 +1 11870731 rs12564002 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:795:181,175:232,204:882 +1 11870860 rs12565990 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:680:155,144:183,189:709 +1 11871113 rs55800247 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:123,129:183,190:1249 +1 11871266 rs55738737 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:693:147,154:190,193:1040 +1 11871586 rs139569786 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:490:103,103:131,133:639 +1 11871708 rs6658684 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:510:113,105:149,138:983 +1 11871714 rs140586031 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:11871714_C_T:510:106,111:141,146:1034 +1 11871728 rs116422234 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:11871714_C_T:547:111,117:153,160:1004 +1 11871775 rs72640247 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:639:141,150:174,175:1010 +1 11872320 rs6699270 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:147,131:192,173:1231 +1 11872395 rs6701960 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:129,128:170,162:811 +1 11872476 rs149555792 TG T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:501:92,97:0,0:1236 +1 11872656 rs6687229 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:11872656_C_T:465:68,98:52,40:893 +1 11872984 rs72640249 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:573:154,100:190,121:802 +1 11873020 rs72640251 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:552:140,89:191,126:804 +1 11873052 rs72640252 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:11873052_T_C:564:146,93:199,129:1201 +1 11873055 rs72640253 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:11873052_T_C:565:148,93:196,127:1216 +1 11873416 rs17037427 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:614:166,173:117,126:1065 +1 11873496 rs145628269 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11873496_G_A:537:139,127:119,117:376 +1 11873506 rs138252948 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11873496_G_A:531:140,126:119,118:339 +1 11873512 rs142005893 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11873496_G_A:532:142,120:123,115:292 +1 11873787 rs17037429 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:686:142,179:172,196:728 +1 11873851 rs12406667 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:807:213,169:223,197:705 +1 11873869 rs12404124 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:783:208,173:212,186:587 +1 11873985 rs17376286 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:753:178,186:196,187:532 +1 11874154 rs17037432 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:11874154_A_C:701:161,167:194,179:890 +1 11874178 rs17037434 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:11874154_A_C:688:164,161:182,175:958 +1 11874189 rs17037435 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:11874154_A_C:665:156,150:169,166:887 +1 11874431 rs114083374 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:121,148:150,169:586 +1 11874855 rs149393118 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:11874855_T_C:604:132,149:20,20:531 +1 11874872 rs144795462 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:11874855_T_C:605:130,146:30,27:803 +1 11874993 rs143553702 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:478:99,112:113,133:425 +1 11875031 rs142218582 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:434:82,99:101,114:463 +1 11875089 . CA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:325:1,66,85:1,66,85:99 +1 11875089 . CAAA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:325:1,66,85:1,66,85:99 +1 11875613 rs34377596 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:671:135,141:190,202:1250 +1 11876300 rs41275472 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:709:166,160:194,190:1076 +1 11876395 rs72640257 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:11876395_A_G:663:154,148:179,186:1162 +1 11876417 rs198391 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|0:11876395_A_G:636:153,132:187,170:1270 +1 11876662 rs17376328 G A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:837:176,147:215,194:1564 +1 11877266 rs72640258 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:635:147,142:181,164:784 +1 11878619 rs12564593 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:699:170,145:217,168:911 +1 11879162 rs198392 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:122,137:162,177:1133 +1 11879267 rs2076001 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:126,128:165,158:1038 +1 11879360 rs2076002 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:155,120:181,147:864 +1 11879685 rs198393 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:655:152,156:163,186:1199 +1 11879699 rs2050265 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:678:147,156:175,201:1552 +1 11880731 rs149764880 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11880731_G_T:582:138,112:164,141:767 +1 11880737 . T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11880731_G_T:581:138,116:175,144:1241 +1 11880738 . G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11880731_G_T:581:138,116:175,144:1241 +1 11880741 rs145724263 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11880731_G_T:592:141,121:181,149:861 +1 11880748 rs149002827 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11880731_G_T:593:139,123:180,156:1433 +1 11880749 rs147124396 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11880731_G_T:593:139,123:180,156:1433 +1 11880755 rs138473600 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11880731_G_T:626:140,124:180,161:1127 +1 11880760 rs142489028 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11880731_G_T:630:141,124:176,165:1111 +1 11880768 rs146777460 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11880731_G_T:639:144,129:181,165:1050 +1 11881138 rs198395 C A 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:436:63,113:12,14:433 +1 11881441 rs6699618 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:133,102:155,141:625 +1 11882142 rs6669371 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:788:202,228:156,192:550 +1 11882632 rs55994631 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:721:141,159:195,222:1056 +1 11883332 rs198397 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:11883332_A_G:613:137,128:181,170:1125 +1 11883342 rs198398 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:11883332_A_G:614:0,261:100,360:691 +1 11883629 rs198399 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:131,132:154,148:573 +1 11883731 rs12567136 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:141,113:189,151:919 +1 11884555 rs198400 A G 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:760:1,277:90,357:403 +1 11885647 rs56153133 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:704:145,166:186,200:914 +1 11886383 rs138460149 C CTG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:119,131:26,21:663 +1 11886804 rs72640260 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11886804_G_T:555:109,121:156,166:1157 +1 11886813 rs2076004 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:11886804_G_T:543:110,119:149,160:1078 +1 11887303 rs7537765 A G 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0|1:11887303_A_G:679:105,101:149,125:1136 +1 11887316 rs41275478 C A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0|1:11887303_A_G:664:106,103:146,131:1114 +1 11887373 rs374218595 T TG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11887373_T_TG:473:105,94:33,23:584 +1 11887382 rs56190030 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11887373_T_TG:479:105,93:35,21:651 +1 11887685 rs56043629 G GTTTCACCACTTTGGCAAGGCTGGTCTTGAA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:456:101,72:39,75:799 +1 11888384 rs198401 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:119,114:157,143:1020 +1 11889468 rs535107 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:687:161,140:204,183:1277 +1 11890204 rs41275488 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:658:138,145:175,195:1239 +1 11890695 rs503040 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:122,148:127,161:568 +1 11892615 rs2236796 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:133,136:150,155:659 +1 11892650 rs2236797 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:128,137:168,177:937 +1 11893289 rs72640262 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:675:155,150:181,187:1147 +1 11894133 rs41275494 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:135,102:164,158:878 +1 11895475 rs143800963 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:600:129,125:166,177:667 +1 11895675 rs17037452 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:510:113,99:151,146:935 +1 11895795 rs55857306 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:498:116,103:144,130:746 +1 11896602 rs2075538 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:543:125,126:150,141:761 +1 11896856 rs55892892 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:575:127,118:169,153:1086 +1 11897286 rs72640267 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:131,133:170,169:1068 +1 11897592 rs198406 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:626:92,120:139,152:783 +1 11897926 rs55788159 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:512:100,112:148,148:950 +1 11898130 rs198408 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:652:123,136:118,126:1699 +1 11898859 rs55741089 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:452:95,93:131,120:935 +1 11899033 rs1023252 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:665:143,166:158,190:1217 +1 11900035 rs198410 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,240:80,310:431 +1 11901694 rs41275502 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:185,144:141,114:663 +1 11901816 rs72640270 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:125,128:152,152:911 +1 11904076 rs198358 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:122,110:160,157:879 +1 11905007 rs57863450 C CTCTTA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:504:116,119:21,13:489 +1 11905851 rs61764044 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:686:178,140:208,163:1029 +1 11905974 rs5068 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:690:139,116:186,152:1221 +1 11906960 rs198369 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:510:112,97:24,24:678 +1 11910462 rs55714388 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:565:123,124:158,158:895 +1 11910677 rs632793 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:650:146,145:190,170:734 +1 11911844 rs2981953 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:629:136,149:165,171:626 +1 11913757 rs198375 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:147,130:190,159:974 +1 11914043 rs198376 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:536:2,248:2,244:252 +1 11914074 rs12411044 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:527:123,110:123,110:575 +1 11914266 rs112385965 A AAAAAT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:128,144:39,65:1060 +1 11914829 rs6668352 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:140,123:169,151:559 +1 11915467 rs198379 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:487:102,94:132,128:828 +1 11916095 rs549596 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:522:142,165:93,102:1158 +1 11916233 rs198386 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:107,148:141,179:769 +1 11917340 rs198388 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:656:137,139:198,183:1381 +1 11917620 rs35207557 T TA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:604:136,117:44,53:963 +1 11919271 rs198389 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:525:119,100:161,146:1032 +1 11920189 rs3753581 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:699:206,209:0,0:444 +1 11921181 rs12406089 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:522:118,115:155,136:528 +1 11921243 rs12402363 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:130,115:166,145:1075 +1 11921993 rs12406383 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:579:151,121:162,144:739 +1 11922148 rs12402728 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:742:150,180:199,219:1333 +1 11922298 rs6668659 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:120,141:140,159:901 +1 11924109 . A AGT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:295:5,74,61:0,0,0:160 +1 11924109 . A AGTGT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:295:5,74,61:0,0,0:160 +1 11925300 rs6676300 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:124,122:162,152:973 +1 11928714 rs1009592 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:614:137,140:169,157:947 +1 11928830 rs1009591 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:507:136,97:155,120:907 +1 11929172 rs474859 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:680:193,221:131,133:741 +1 11931135 . A AAATAT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:183:0,0,0:0,0,0:143 +1 11931137 . T A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/0:.:183:0,0,0:0,0,0:143 +1 11932088 rs56074814 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:640:148,139:200,154:938 +1 11932425 rs56196613 T TGG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:11932401_GT_G:452:95,67:0,0:714 +1 11932467 rs11121836 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:503:111,79:49,38:977 +1 11932678 rs34593006 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:616:136,114:202,161:1166 +1 11932704 rs7415914 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:629:139,115:209,166:1247 +1 11937042 . TACAC T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:433:113,101:113,101:198 +1 11937139 . ATG A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:422:110,93:110,93:198 +1 11965792 rs72640287 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:114,121:165,187:1191 +1 11982544 rs2639453 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:506:0,234:58,286:301 +1 11984424 rs75475901 A AG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:445:0,179:25,25:308 +1 11986553 rs79841670 A AG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:455:0,224:13,13:289 +1 11988439 rs1212955 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:689:0,305:82,385:430 +1 11995176 rs1208984 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:602:0,280:53,331:332 +1 11996537 rs72640295 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:96,117:134,158:1142 +1 12003277 rs1966174 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,271:48,319:335 +1 12023500 rs72641011 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:650:106,122:147,150:962 +1 12027715 rs34499671 A T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:141,155:141,155:198 +1 12045918 rs55836788 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:12045918_A_G:541:125,120:148,139:711 +1 12045923 rs2336383 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:12045918_A_G:539:0,246:58,294:654 +1 12046063 rs2336384 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:602:0,294:48,313:398 +1 12046089 rs873458 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,290:58,327:419 +1 12046334 rs873457 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:576:0,251:96,333:466 +1 12046880 rs28718032 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:515:0,238:0,238:267 +1 12047028 rs61776516 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:626:0,284:86,346:505 +1 12047196 rs75279925 G GTC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:479:0,226:24,24:327 +1 12047233 rs6668386 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,257:61,61:421 +1 12048595 rs56243319 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:492:0,212:66,278:374 +1 12048883 rs4846084 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:526:0,238:52,290:317 +1 12050634 rs4846085 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:678:0,286:127,400:601 +1 12051930 rs58026984 C G 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:163:0,32:46,46:202 +1 12052405 rs6675934 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:624:0,277:83,347:416 +1 12053100 rs2103876 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:555:0,236:81,292:480 +1 12053264 rs2878677 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:652:0,308:0,290:456 +1 12053718 rs1810564 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,242:48,290:271 +1 12053790 rs34578450 CA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:445:3,194:3,194:99 +1 12054030 rs1810563 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:645:0,302:47,349:312 +1 12054595 rs140905126 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:119,121:145,153:672 +1 12054911 rs6672267 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:622:0,276:80,345:448 +1 12056440 rs2236056 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,244:59,292:374 +1 12056815 rs7535555 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,230:84,314:412 +1 12056945 rs11577895 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:492:0,198:103,301:461 +1 12059412 rs2295281 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:615:0,279:88,344:488 +1 12060155 rs79267704 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:563:1,249:58,58:334 +1 12060336 rs12066842 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:568:0,249:40,289:303 +1 12060565 rs6676963 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:627:0,279:79,346:431 +1 12062205 rs2236057 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,196:51,244:380 +1 12062361 rs2236058 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:620:0,286:65,340:402 +1 12062507 rs11121847 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:631:0,299:48,338:347 +1 12066218 rs3830887 T TA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:688:1,295:94,94:449 +1 12067044 rs7550536 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,269:51,315:352 +1 12067894 rs11121848 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:368:0,184:0,184:198 +1 12068451 rs61776521 G A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:341:0,154:0,0:158 +1 12068480 rs372992677 AC A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:12068480_AC_A:332:0,151:0,0:160 +1 12068511 rs184440302 C T 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:12068480_AC_A:358:0,155:0,0:145 +1 12068525 rs7537348 A G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:12068480_AC_A:366:0,161:0,0:151 +1 12068546 rs74976972 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:12068480_AC_A:408:23,191:0,168:133 +1 12068589 rs79316643 C T 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:392:1,160:1,156:210 +1 12068660 rs58653539 T C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:425:0,179:0,179:99 +1 12068941 rs6686734 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:500:0,241:30,271:271 +1 12070292 rs730123 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:620:0,281:60,338:382 +1 12070920 rs10864546 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:591:86,344:0,251:359 +1 12071680 rs1042842 A G 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:599:0,224:46,263:394 +1 12072518 rs3088064 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:507:0,235:0,223:301 +1 12073785 rs4845892 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:700:0,308:83,380:450 +1 12073859 rs34085267 CT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:429:3,198:3,198:99 +1 12073937 rs4846086 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:513:0,223:45,268:217 +1 12076316 rs141832861 CAA C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:327:27,166:2,141:215 +1 12076347 rs7519897 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:532:0,204:0,196:354 +1 12077114 rs6668188 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:511:0,209:88,295:436 +1 12079257 rs4846087 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:355:0,130:29,29:325 +1 12082926 rs2295283 A G 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,208:54,255:403 +1 12083183 rs6670626 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:323:0,119:40,40:357 +1 12083438 . C CTTATTTAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:272:0,76,64:0,0,0:259 +1 12083438 . C CTTATTTATTTAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:272:0,76,64:0,0,0:259 +1 12085452 rs2878737 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:643:0,281:90,354:492 +1 12085974 rs4846088 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,253:45,298:309 +1 12086178 rs12726476 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:123,130:160,173:939 +1 12087749 rs1208988 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:498:0,226:72,274:454 +1 12091024 rs61776548 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:503:1,242:34,268:307 +1 12091210 rs946461 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,255:42,290:293 +1 12094046 rs1208991 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:603:114,362:1,245:347 +1 12095030 rs2180179 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:593:0,248:100,348:449 +1 12095076 rs1977151 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:567:0,254:64,318:363 +1 12095868 rs1208993 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:539:89,324:0,229:381 +1 12107312 rs148564074 GCA G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:467:105,100:0,0:342 +1 12109197 rs6685942 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:616:0,274:76,341:432 +1 12109449 rs6673471 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:12109449_C_T:579:0,262:59,321:300 +1 12109451 rs6688697 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:12109449_C_T:576:0,259:59,318:300 +1 12111197 rs10779768 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:668:0,311:41,349:315 +1 12111423 rs4240898 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,253:64,312:348 +1 12112538 rs72641045 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:505:112,112:155,131:674 +1 12124025 rs11569786 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:442:102,97:121,118:522 +1 12130051 rs4491070 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:466:106,111:126,120:682 +1 12130202 rs35249351 TG T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:12130202_TG_T:374:76,89:12,17:444 +1 12130216 rs56227114 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:12130202_TG_T:383:77,89:27,21:521 +1 12130218 rs61206685 TGGG T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:12130202_TG_T:393:82,89:35,18:542 +1 12130517 rs1934150 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:499:100,96:135,137:818 +1 12131770 rs11581850 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:119,122:162,168:931 +1 12133949 rs6684143 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:106,131:156,157:597 +1 12134690 rs72641055 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:655:141,136:193,171:1138 +1 12135150 rs6701099 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:641:125,153:177,191:1082 +1 12135308 . A AT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:400:107,59:107,59:198 +1 12135325 rs6690285 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:596:182,145:133,83:1138 +1 12135411 rs6701404 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:147,111:193,155:1048 +1 12135440 rs72641059 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:122,136:152,177:919 +1 12135526 rs6690493 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:126,110:169,143:1149 +1 12136393 rs7511907 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:528:125,107:148,137:601 +1 12137603 rs11569805 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:130,107:169,152:1260 +1 12138466 rs10864547 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:110,107:172,167:1373 +1 12138629 rs12070530 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:545:181,160:100,99:1314 +1 12138687 rs12125973 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:473:1,212:52,259:339 +1 12141420 rs72641062 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:470:116,96:130,128:533 +1 12141461 rs2297875 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:492:0,230:48,267:363 +1 12141876 rs11582661 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:484:0,217:58,270:345 +1 12142001 . CCTCTTGCCTCACTTCCTGCTTCCCTT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xGATK;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:108:59,49:59,49:99 +1 12142117 rs6698465 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:481:0,224:76,76:526 +1 12142698 rs11121854 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:588:1,248:86,313:466 +1 12143680 rs1201115 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:619:0,288:56,344:356 +1 12144219 rs1201114 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:654:0,301:89,361:495 +1 12144434 rs1201113 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:116,120:148,162:841 +1 12145364 rs1201112 G A 50 PASS platforms=3;platformnames=CG,10X,Illumina;datasets=3;datasetnames=CGnormal,10XChromium,HiSeqPE300x;callsets=4;callsetnames=CGnormal,10XGATKhaplo,HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:501:0,165:101,101:469 +1 12147311 rs1201111 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:378:57,69:29,39:689 +1 12147414 rs6675841 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:450:75,99:120,143:927 +1 12148388 rs34475937 AG A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:637:123,139:0,0:1454 +1 12150385 rs72641067 A G 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:416:0,192:0,172:258 +1 12152566 rs60030428 CT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:400:2,174:2,174:99 +1 12153188 rs1201110 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:650:0,298:69,353:416 +1 12153733 rs693708 T G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,244:53,297:241 +1 12155071 rs72641068 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:667:0,298:72,366:394 +1 12156846 rs60971303 TCA T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,250:15,15:299 +1 12157288 rs11569835 T C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:712:0,281:87,353:519 +1 12158312 rs11569840 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:890:220,181:271,222:1006 +1 12158567 rs11576403 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:844:207,200:223,223:1192 +1 12159820 rs72641071 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:696:183,132:220,154:816 +1 12160181 rs11121859 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:136,143:165,177:695 +1 12161483 rs112614202 C CAA 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:502:141,116:120,94:531 +1 12161752 rs72641073 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:532:112,105:40,40:858 +1 12162021 rs11578477 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:143,103:175,141:881 +1 12163281 rs11569844 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:12163281_C_T:554:121,126:141,155:592 +1 12163288 rs11569845 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:12163281_C_T:561:129,121:149,150:616 +1 12163639 rs184851506 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:501:92,122:112,144:527 +1 12163683 rs145564898 T G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:531:104,125:0,0:635 +1 12163701 rs200497267 AT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:483:102,117:0,0:292 +1 12164071 rs562844 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:12164071_T_C:631:147,144:181,163:950 +1 12164078 rs4845894 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:12164071_T_C:597:141,140:170,159:927 +1 12164079 rs11121860 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:12164071_T_C:595:141,138:169,157:927 +1 12164090 rs6541014 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:638:159,145:176,163:1070 +1 12164137 rs4845895 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:685:152,163:178,194:1245 +1 12164391 rs11569850 G C 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:700:120,99:153,141:1083 +1 12164675 rs11569852 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:116,110:147,143:961 +1 12165130 rs11569859 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:580:135,125:166,147:903 +1 12165248 rs11569860 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:473:101,108:134,127:775 +1 12165584 . C CCTCT 50 PASS platforms=2;platformnames=Illumina,Solid;datasets=2;datasetnames=HiSeqPE300x,SolidSE75bp;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,10,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:340:74,84:0,0:248 +1 12165630 . T TCACA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:319:0,65,77:0,0,0:252 +1 12165630 . TCA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:319:0,65,77:0,0,0:252 +1 12166169 rs72641083 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:509:103,107:146,151:1199 +1 12167179 rs56321716 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:567:127,123:162,157:784 +1 12167267 rs56027210 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:108,119:150,154:810 +1 12167392 rs659876 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:143,124:166,156:689 +1 12167626 rs56706098 A AAATATACT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:766:172,165:55,38:761 +1 12168326 rs113246048 G T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:12168326_G_T:467:95,109:34,22:650 +1 12168329 rs138046587 GT G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:12168326_G_T:459:92,109:32,19:682 +1 12168458 rs12736809 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:132,124:182,159:1011 +1 12168523 rs11569864 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:633:150,125:196,158:1069 +1 12168584 rs4846091 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:139,104:177,134:890 +1 12168856 rs11121864 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:137,127:159,150:572 +1 12169977 rs11569873 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:142,134:174,161:701 +1 12170288 rs2297729 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_IonExomeTVC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:617:114,128:143,145:804 +1 12170425 rs3818804 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:121,116:145,144:905 +1 12170494 rs11121865 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:525:113,125:140,148:517 +1 12170576 rs11121866 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:138,120:167,135:488 +1 12170735 rs11121867 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:115,117:149,145:609 +1 12170923 rs11569879 GGGA G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:126,108:22,17:664 +1 12170974 rs11121868 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:136,123:44,29:825 +1 12171012 rs11590366 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:141,105:213,136:824 +1 12171334 rs11569881 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:125,106:159,132:706 +1 12171730 rs11121870 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:124,124:158,157:1005 +1 12172624 rs11121871 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:164,159:141,124:451 +1 12172867 rs11569888 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:516:118,124:133,137:509 +1 12173361 rs67622403 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:661:154,131:198,178:1306 +1 12173446 rs147203103 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:676:158,146:199,167:607 +1 12173656 rs112849320 G GAC 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:631:67,344:0,0:495 +1 12173661 rs113728129 T C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:129,147:0,0:253 +1 12173788 rs72641092 C G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:636:196,183:0,0:840 +1 12173838 rs149359773 GAGAC G 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:556:156,134:0,0:340 +1 12174100 rs72641094 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:129,124:154,140:819 +1 12175729 rs1763642 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:489:1,213:91,286:489 +1 12175818 rs598661 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:458:108,95:131,123:667 +1 12176238 rs4846092 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:129,113:176,143:687 +1 12176257 rs4846093 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:129,117:154,134:531 +1 12179612 rs61581661 C CT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:597:8,271:8,271:99 +1 12184739 rs34712586 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,243:62,305:315 +1 12186797 rs1148476 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:687:0,300:106,392:479 +1 12186933 rs1148475 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:578:0,272:53,316:367 +1 12187232 rs11569920 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:539:0,236:69,302:381 +1 12187541 rs551062 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:532:0,228:85,305:440 +1 12187712 rs497426 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:590:1,256:94,340:422 +1 12188094 rs1148474 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:579:1,253:85,330:444 +1 12188427 rs12401286 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:532:0,233:71,300:409 +1 12188482 rs1201122 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,250:99,343:480 +1 12188613 rs12402147 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:552:0,246:93,315:490 +1 12188651 rs1201123 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,262:88,326:497 +1 12188772 rs1201124 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,273:45,310:348 +1 12189091 . C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:120,103:166,133:712 +1 12189233 rs1201126 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:669:0,292:105,387:521 +1 12189561 rs535068 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:655:0,299:84,362:493 +1 12190741 rs685332 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,275:61,326:392 +1 12191200 rs482170 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:657:0,292:86,378:381 +1 12192270 rs1201171 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:649:0,284:106,370:491 +1 12192626 rs1201116 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:624:0,271:82,353:405 +1 12193527 rs1148473 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,271:41,312:292 +1 12193925 rs7555170 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:554:0,227:59,286:344 +1 12194451 rs1148472 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:489:0,237:40,263:358 +1 12194745 rs3766735 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,236:87,306:478 +1 12194789 rs3766734 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:481:0,232:35,251:334 +1 12195224 rs1148470 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,229:113,342:499 +1 12196148 rs1201118 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:566:56,309:0,241:397 +1 12196526 rs591598 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:501:113,103:152,138:856 +1 12196679 rs72642607 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:506:87,117:123,140:583 +1 12196706 . GAA G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:391:16,87,91:0,68,91:351 +1 12196706 . GAAAA G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:391:16,87,91:0,68,91:351 +1 12196769 rs816046 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:583:0,256:77,317:459 +1 12197102 rs521106 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:407:0,190:35,225:292 +1 12197384 rs59611210 A AATC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:134,128:24,30:753 +1 12198297 rs476488 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:575:102,111:26,26:749 +1 12198635 rs6419481 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:611:0,282:71,336:418 +1 12199904 rs146315334 GCTGGT G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:127,164:24,20:724 +1 12201030 rs12738789 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:473:115,114:113,111:395 +1 12202095 rs755398 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:146,123:175,144:935 +1 12204354 rs1148467 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:467:0,225:0,215:266 +1 12204654 rs10779769 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:503:100,117:133,153:853 +1 12205886 rs1201165 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:499:100,104:148,144:972 +1 12206652 rs641941 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:571:116,123:163,171:1058 +1 12206755 rs631272 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:138,126:177,168:1293 +1 12206866 rs630542 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:611:146,128:179,161:986 +1 12207782 rs1148466 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:128,129:178,165:857 +1 12207828 rs1148465 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:128,126:170,152:692 +1 12208897 rs1148464 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:508:97,302:0,205:330 +1 12209208 rs967403 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:598:161,104:43,32:805 +1 12210686 rs1148462 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:142,137:193,183:1380 +1 12210940 rs370906864 TAGTA T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:708:176,159:52,33:1243 +1 12212385 rs11583360 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:510:105,113:139,152:1405 +1 12213337 rs1148461 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:109,138:126,180:377 +1 12213403 rs7551134 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:680:153,128:145,123:1559 +1 12216488 rs1148460 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:668:171,139:198,156:954 +1 12217140 rs816063 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:678:139,165:181,196:1162 +1 12217328 rs35947903 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:162,126:26,27:725 +1 12217852 rs1148459 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:137,139:163,162:825 +1 12218812 rs652284 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:112,127:150,163:1129 +1 12219861 rs637299 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:603:145,169:122,149:629 +1 12219910 rs816060 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:481:83,117:42,36:919 +1 12220369 rs1212890 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:549:125,124:144,139:438 +1 12220760 rs7545382 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:530:122,108:158,134:604 +1 12220797 rs622839 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:574:112,134:152,169:1123 +1 12221026 rs621938 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:586:138,127:138,127:645 +1 12221069 rs150885757 C CA 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:477:118,113:114,108:132 +1 12221606 rs534146 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:621:144,126:191,151:953 +1 12223451 rs590368 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:644:143,141:181,180:1436 +1 12223482 rs590314 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:602:0,283:75,324:441 +1 12232806 rs496888 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:615:125,146:159,188:924 +1 12233061 rs1148458 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,272:74,327:461 +1 12233754 rs976881 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:515:0,217:80,297:400 +1 12238616 rs72642617 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:498:113,110:141,134:905 +1 12240415 rs5745984 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:537:111,115:145,157:823 +1 12240676 rs3766730 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:496:107,109:38,42:1111 +1 12240824 rs616645 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:118,128:165,173:933 +1 12242458 rs6697733 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:537:120,107:164,143:1085 +1 12242619 rs150781783 T TTGAA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:431:113,94:0,0:315 +1 12242793 rs587406 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:638:119,150:56,55:1399 +1 12242870 rs17882988 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:531:115,135:127,152:736 +1 12242949 rs17879121 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:121,112:160,147:890 +1 12243274 rs17037696 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:117,129:138,152:681 +1 12243377 rs542282 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:573:151,114:168,133:670 +1 12243503 rs33995912 TTC T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:476:0,238:0,238:198 +1 12243666 rs141716486 CTATCTGTT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:654:169,171:0,0:248 +1 12244258 rs512996 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:128,141:150,158:501 +1 12244318 rs677844 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:126,140:148,160:483 +1 12245029 rs505844 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:128,117:164,144:525 +1 12245494 rs55645383 T TC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:472:101,106:39,15:412 +1 12245708 rs478143 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:612:131,136:50,36:934 +1 12245732 rs4845897 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:607:126,144:42,39:943 +1 12247008 rs5745993 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:618:140,130:137,126:675 +1 12248240 rs3216795 ATG A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:587:133,132:29,41:758 +1 12248291 rs603151 G C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:549:141,108:39,27:833 +1 12248425 rs500734 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:531:121,120:144,146:807 +1 12248503 rs5746001 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:488:123,110:137,128:447 +1 12248942 rs945439 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:745:127,100:164,133:861 +1 12248965 rs945438 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:128,107:170,137:674 +1 12249020 rs1815530 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:117,113:158,161:1017 +1 12249031 rs1201157 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:117,112:155,158:1060 +1 12249232 rs522205 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:538:123,119:148,139:715 +1 12249643 rs525891 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:162,155:176,174:911 +1 12249770 rs548580 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:574:131,126:164,149:857 +1 12249829 rs683240 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:142,130:176,146:940 +1 12249865 rs683171 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:141,117:160,125:614 +1 12249988 rs550523 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:479:111,115:18,22:601 +1 12250437 rs680480 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:398:61,83:98,122:875 +1 12251191 rs472093 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:439:101,102:113,122:566 +1 12251318 rs666078 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:458:92,105:127,140:744 +1 12251765 rs498906 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:525:95,91:45,24:685 +1 12251808 rs653667 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:486:95,75:43,31:890 +1 12252333 . CTGTG C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:306:84,70:0,0:259 +1 12252892 rs1768642 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:453:110,100:25,15:656 +1 12252955 rs1061622 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:109,97:138,136:819 +1 12253351 rs636964 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:129,121:165,158:996 +1 12254201 rs2275416 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:152,152:193,184:1124 +1 12255360 rs590977 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:676:142,153:186,192:1169 +1 12256997 rs113856503 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:599:137,104:0,0:326 +1 12257399 rs7522295 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:691:187,206:136,152:1079 +1 12258231 rs235249 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:450:82,84:27,37:823 +1 12258941 rs17880043 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:486:93,99:54,43:1013 +1 12261972 rs5746051 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:149,147:188,180:1186 +1 12262298 rs5746053 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:144,129:197,158:903 +1 12262426 rs5746054 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:684:151,145:191,195:1158 +1 12262689 rs5746056 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:12262689_G_A:711:161,155:206,199:1570 +1 12262690 rs5746057 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:12262689_G_A:712:161,156:206,200:1570 +1 12262792 rs5746059 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:741:170,174:205,201:957 +1 12263545 rs17884213 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:467:93,102:135,139:907 +1 12263817 rs235221 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:111,115:149,153:718 +1 12264355 rs235219 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:459:0,200:79,263:473 +1 12264847 rs151248488 TCAC T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:358:89,93:0,0:259 +1 12266591 rs5746061 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:701:166,145:204,185:1173 +1 12266612 rs5746062 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:665:151,136:205,176:965 +1 12267265 rs1061624 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:117,131:144,162:717 +1 12267270 rs5030792 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:132,127:158,152:655 +1 12267292 rs3397 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:627:0,288:60,348:317 +1 12267971 rs55651536 G GA 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:451:112,111:86,79:533 +1 12267999 rs1061628 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:119,105:166,157:1302 +1 12269947 rs235215 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:630:150,136:179,165:732 +1 12271503 rs235214 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:698:145,162:184,210:1353 +1 12272331 rs235212 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:550:0,250:71,309:427 +1 12273402 rs11121887 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:114,96:153,123:743 +1 12273816 rs11121888 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:409:73,76:99,98:647 +1 12275520 rs235211 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:455:0,209:51,256:352 +1 12276983 rs138787583 CA C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:134,118:41,36:975 +1 12277452 rs139549709 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:129,136:152,153:531 +1 12277664 rs4846100 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:685:165,147:194,170:964 +1 12278932 rs7550488 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:145,108:173,147:974 +1 12281677 rs60875267 AT A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:437:101,106:92,100:130 +1 12282181 rs11582774 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:616:142,141:170,170:878 +1 12284052 rs61774894 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:516:120,103:149,135:858 +1 12291822 rs11586544 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:684:0,306:82,384:416 +1 12295188 rs11121891 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:687:0,328:77,369:519 +1 12303288 rs571793 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:640:0,281:74,355:365 +1 12304694 rs79820334 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:701:168,165:188,180:750 +1 12335341 rs235238 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:695:0,317:57,374:351 +1 12346047 . T C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:202:0,0:0,0:157 +1 12350575 . C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:661:156,137:186,177:768 +1 12364232 rs1997724 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:754:0,336:91,417:465 +1 12366460 rs72642646 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:436:0,203:51,235:396 +1 12380438 rs17457483 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:728:0,330:94,399:498 +1 12399399 rs55881970 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:819:0,377:112,456:607 +1 12401868 rs28551666 A C 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:659:0,215:125,325:614 +1 12411406 rs28806228 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:728:0,341:51,389:242 +1 12417992 rs5772487 C CG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,236:61,61:410 +1 12418700 rs10864552 T C 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:744:0,264:97,344:547 +1 12436431 rs6541019 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:712:0,325:87,390:493 +1 12436898 rs17457661 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:643:0,319:60,338:484 +1 12456051 . G GAT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:518:119,114:119,114:99 +1 12460943 rs10442703 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:368:0,155:60,205:290 +1 12467201 rs6682241 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:785:0,372:84,429:489 +1 12472767 rs6541021 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:784:0,365:105,437:568 +1 12482072 rs659937 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,275:100,375:455 +1 12487295 . TTTATTA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:379:0,203:0,0:259 +1 12501012 rs192824421 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:662:131,137:131,137:1123 +1 12508943 rs475983 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:654:1,303:76,353:468 +1 12510432 rs530568 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:717:0,322:106,407:558 +1 12513022 rs113998279 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:736:171,149:216,200:1345 +1 12513378 rs639329 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:738:0,334:82,409:438 +1 12522308 rs670279 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:651:0,297:95,355:577 +1 12539675 rs626822 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:577:0,260:86,327:453 +1 12564565 rs10864554 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:615:0,272:85,350:444 +1 12565147 rs6541024 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:466:0,195:70,256:405 +1 12567232 rs7554257 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,257:48,299:254 +1 12570579 rs3831905 C CTG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:407:98,93:98,93:198 +1 12572517 . G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:648:143,129:59,42:955 +1 12577649 rs144904926 T TTATC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:411:111,97:0,0:249 +1 12580752 rs61774943 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,232:59,289:349 +1 12580856 rs6685569 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:12580856_T_C:564:0,231:0,231:428 +1 12580857 rs6670366 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:12580856_T_C:564:0,231:0,231:428 +1 12582400 . G T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:651:2,295:41,41:348 +1 12582410 rs112976469 C CAG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,282:35,35:299 +1 12585129 rs11121918 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:597:1,253:1,240:351 +1 12586892 rs760942 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:653:0,310:27,337:269 +1 12587673 rs11121919 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:449:0,205:41,41:193 +1 12588206 rs11576283 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:484:0,206:84,286:432 +1 12589986 rs7550795 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:686:120,404:3,284:190 +1 12590060 rs7537018 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,244:71,315:392 +1 12590762 rs10864555 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:12590762_T_C:596:0,270:85,338:432 +1 12590763 rs12045649 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:12590762_T_C:596:0,270:85,338:432 +1 12590964 rs35682044 T TA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:623:0,274:86,86:413 +1 12592282 rs7543597 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:12592282_C_T:633:0,284:82,355:435 +1 12592290 rs12039125 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:12592282_C_T:611:0,282:63,337:301 +1 12592294 rs7543599 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:12592282_C_T:612:0,278:67,337:304 +1 12592928 rs12408667 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:685:0,295:109,394:526 +1 12593097 rs56323100 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:659:129,131:129,131:1515 +1 12599133 rs4845901 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:436:127,120:87,97:525 +1 12602900 rs2038117 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1/1:.:125:2,72:49,49:289 +1 12604691 rs7522534 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:777:0,367:90,419:548 +1 12604995 rs6541026 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:765:1,342:1,342:243 +1 12605011 rs6541027 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:757:0,344:0,344:307 +1 12605456 rs6541028 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:644:81,374:0,290:431 +1 12605953 rs145453950 CTTATTTAT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:342:0,192:0,0:259 +1 12606133 rs6686778 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,271:34,305:292 +1 12606267 rs4846109 A C 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:548:0,285:0,282:207 +1 12606361 rs4846110 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:593:0,274:47,321:293 +1 12606394 rs4845902 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:671:0,302:75,372:373 +1 12606725 rs10779770 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:686:0,314:100,381:580 +1 12606776 rs10746498 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:654:0,304:75,356:476 +1 12606962 rs10779771 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:566:1,255:65,312:387 +1 12606997 rs10864558 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:588:0,251:111,352:499 +1 12608178 rs6541030 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:419:0,201:37,227:307 +1 12608691 rs139268233 A AGAGG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:218:0,105:0,0:259 +1 12609086 rs10864559 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:497:0,230:43,268:321 +1 12609434 rs6541031 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:398:0,182:40,222:276 +1 12610451 rs12724629 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:496:0,187:74,261:377 +1 12611180 rs10864560 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:487:0,219:51,270:339 +1 12611407 rs79903609 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:359:0,141:79,79:413 +1 12613422 rs6690264 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:536:0,243:68,305:392 +1 12614029 rs6541032 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,264:56,313:356 +1 12614848 rs3924048 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:536:0,241:0,241:336 +1 12617531 rs4845903 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:592:119,129:158,159:929 +1 12619718 rs4446981 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:502:103,108:122,129:517 +1 12619998 rs148700721 C CT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:441:106,84:16,25:403 +1 12622102 rs11121936 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:149,114:190,160:1056 +1 12622287 rs11580575 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:590:117,140:155,174:1027 +1 12623803 rs12711522 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:675:145,152:181,190:987 +1 12626549 rs4846118 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:137,120:194,164:1302 +1 12626608 rs58146318 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:115,137:137,170:988 +1 12627680 rs4997711 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:123,110:177,150:868 +1 12627763 rs4385721 G A 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:147,136:112,111:572 +1 12628637 rs4240900 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:113,119:157,150:884 +1 12628770 rs4846119 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:522:115,109:149,142:880 +1 12629108 rs4253925 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:12629108_A_G:492:95,116:142,137:518 +1 12629140 rs4506461 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:12629108_A_G:430:92,104:107,122:457 +1 12629178 rs4525052 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:464:95,108:129,127:537 +1 12629326 rs57014134 A AGAGT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:115,126:38,20:596 +1 12629769 rs6541040 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:118,132:155,175:953 +1 12630634 rs4846120 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:135,144:173,180:1192 +1 12630700 rs4846121 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:641:132,151:47,51:1128 +1 12630786 rs4845905 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:127,142:157,175:655 +1 12633405 rs7512533 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:543:0,217:0,200:620 +1 12634185 rs4845906 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:759:160,161:216,220:1292 +1 12635412 rs11121941 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:635:137,132:177,173:984 +1 12635605 rs4846123 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:155,134:173,149:658 +1 12635792 rs10864571 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:141,138:178,171:852 +1 12636312 rs4073718 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:584:136,130:24,17:525 +1 12636361 rs4073719 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:529:126,108:25,24:661 +1 12637160 rs4845907 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:696:168,147:205,177:1059 +1 12638964 rs2275875 T C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:680:103,135:144,160:843 +1 12639018 rs2275874 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:122,123:161,145:583 +1 12639168 rs3128461 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:589:129,118:66,34:848 +1 12639596 rs2358737 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:125,138:168,174:870 +1 12640127 rs3128458 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:121,133:159,171:1042 +1 12641488 rs3128451 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:114,138:136,170:943 +1 12641758 rs3128449 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:559:125,137:30,36:904 +1 12642129 rs3128446 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:657:151,146:182,170:1064 +1 12644898 rs35962425 AGT A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:490:122,123:0,0:259 +1 12644985 rs113360181 G GTCTC 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:583:1,307:0,0:290 +1 12645411 rs33958058 CTG C 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:527:127,132:0,0:341 +1 12645497 rs3121606 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:694:148,165:183,194:830 +1 12646844 rs75751663 GAGAA G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:430:1,197:46,46:389 +1 12648257 rs70987257 C CACA 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:617:0,282:70,70:270 +1 12648866 rs3121607 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,237:109,346:435 +1 12649339 rs3128467 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:627:0,259:100,342:505 +1 12649900 rs61776834 A G 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:626:168,188:121,150:918 +1 12650069 rs7535205 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:12650069_T_C:564:113,143:156,151:587 +1 12650076 rs7535209 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:12650069_T_C:575:116,148:152,159:642 +1 12650321 rs4553207 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:577:0,243:115,349:541 +1 12651473 rs4373773 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,238:88,314:464 +1 12652131 rs56010128 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:444:83,94:121,142:959 +1 12652790 rs4240901 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:496:0,230:39,269:300 +1 12652861 rs4240902 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:525:1,230:89,309:456 +1 12653199 rs10864572 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:635:1,281:103,367:511 +1 12654035 rs12045736 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:121,120:171,153:971 +1 12655141 rs72642695 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:400:81,90:105,116:738 +1 12655203 rs58559967 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:405:93,77:122,106:710 +1 12655725 rs72871195 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:321:74,75:74,75:319 +1 12655930 rs77184154 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:378:80,93:80,93:256 +1 12656208 rs142941548 TG T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:139,107:27,7:387 +1 12656835 rs10864573 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:479:94,111:124,152:664 +1 12657633 rs12146092 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:152,123:161,133:726 +1 12657814 rs11121945 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:117,130:153,181:891 +1 12657844 rs4846124 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,244:84,319:337 +1 12658046 rs12407824 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:588:147,117:161,162:620 +1 12658064 rs58584542 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:150,121:173,150:888 +1 12658121 rs6690561 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:637:0,291:72,350:421 +1 12658809 rs4846125 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:740:0,345:101,409:580 +1 12659350 rs4388713 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:577:1,272:42,310:309 +1 12660420 rs55728759 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:647:150,145:189,174:810 +1 12660599 rs12711523 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:582:149,117:175,138:511 +1 12661028 rs4845908 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:108,102:133,136:785 +1 12661421 rs12136952 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:124,104:162,134:755 +1 12662182 rs57195366 A AAATGACT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:133,127:32,60:936 +1 12663304 rs4846126 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:660:125,168:165,203:1141 +1 12663559 rs72642702 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:621:140,141:174,173:856 +1 12663774 rs4846127 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:143,135:183,180:1071 +1 12663841 rs4845909 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:149,133:174,158:676 +1 12664209 rs6662695 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:588:125,123:187,153:888 +1 12664766 rs6541041 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:112,124:153,148:652 +1 12664887 rs7551703 C A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:102,93:52,42:1113 +1 12664997 rs12085705 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:113,103:155,137:845 +1 12665942 rs61776841 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:129,126:148,155:636 +1 12666095 rs7521755 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:511:110,88:0,0:593 +1 12667402 rs10158516 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:153,130:183,166:1153 +1 12668083 rs6541042 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:119,114:162,147:782 +1 12668321 rs6541043 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:136,116:162,138:1050 +1 12669280 rs6541044 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:558:125,133:153,148:1014 +1 12669404 rs6541045 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:534:129,124:19,10:383 +1 12669452 rs7548227 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:537:118,117:33,31:850 +1 12669753 rs12028194 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:112,118:146,152:823 +1 12670226 rs12092989 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:574:94,120:64,57:1413 +1 12670396 rs4846128 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:666:123,160:169,212:1417 +1 12670962 rs72644504 G T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:642:146,133:64,47:1377 +1 12671685 rs5022243 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:531:124,114:157,137:896 +1 12671703 rs5022242 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:549:123,124:159,151:966 +1 12671809 rs10864574 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:133,160:154,173:567 +1 12671939 rs138133904 A AAAATAAATAAATAAATAAAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:338:71,102:0,0:244 +1 12672149 rs11121950 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:517:108,121:105,117:554 +1 12672625 rs12044197 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:125,143:162,168:1125 +1 12672835 rs4846129 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:462:105,77:31,32:737 +1 12674518 rs59203914 TA T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:382:103,106:81,87:338 +1 12675036 rs3128463 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:538:1,235:84,302:435 +1 12675268 rs3000901 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:521:122,118:20,24:544 +1 12675699 rs4240903 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:611:135,124:41,54:906 +1 12675736 rs3010915 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:589:139,126:31,35:890 +1 12678741 rs3010928 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:541:1,247:70,295:426 +1 12679850 rs3000899 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:553:92,138:42,41:936 +1 12680180 rs6689733 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:629:0,268:102,358:517 +1 12680280 rs111395679 C CAACTAGCCCACCCT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:132,113:40,74:991 +1 12681102 rs3000898 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:548:0,246:62,302:368 +1 12681568 rs12117229 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:689:145,164:193,194:1064 +1 12682574 rs3000896 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:597:116,374:0,231:601 +1 12682855 rs3000895 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:550:0,243:77,310:409 +1 12682909 rs3010930 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,264:100,349:475 +1 12683017 rs6691399 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:623:0,286:84,346:493 +1 12683102 rs3000894 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:553:0,242:86,86:864 +1 12683104 rs145341661 GCTT G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:546:117,123:43,36:1219 +1 12683123 rs67193068 C A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:534:122,106:41,47:1228 +1 12683190 rs6699993 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:469:105,106:127,141:775 +1 12683207 rs34298199 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:469:0,210:60,260:355 +1 12684192 . A AT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:278:0,54,66:0,54,66:198 +1 12684192 . AT A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:278:0,54,66:0,54,66:198 +1 12684504 rs6680343 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:772:177,159:227,207:1456 +1 12684837 rs12402628 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:735:156,185:190,202:802 +1 12685073 rs3010933 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:630:0,291:53,341:298 +1 12685101 rs12744997 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:607:127,131:167,181:908 +1 12685129 rs12405244 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:117,118:153,154:931 +1 12685205 rs12405257 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:548:120,109:155,148:891 +1 12685318 rs72644512 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:758:178,174:207,193:1059 +1 12685681 rs3010934 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:668:154,156:179,173:430 +1 12685841 rs4414053 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:655:144,135:0,0:432 +1 12685925 rs4557983 C G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:122,135:33,31:777 +1 12685959 rs143076981 AAAAC A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:110,104:36,23:789 +1 12686912 rs1892067 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:633:0,295:90,353:366 +1 12687255 . G GA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:588:0,133,131:17,32,0:540 +1 12687255 . G GAA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:588:0,133,131:17,32,0:540 +1 12687277 rs35744439 C CT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:635:0,272:96,96:351 +1 12687788 rs139262621 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:12687788_C_T:533:118,124:21,13:451 +1 12687813 rs4846131 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:12687788_C_T:598:116,134:39,46:935 +1 12687862 rs6698650 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:12687841_T_A:518:113,107:28,36:675 +1 12691042 rs6685741 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:642:149,142:179,167:889 +1 12693125 rs4845911 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:584:117,147:47,22:679 +1 12693641 rs60091996 G GT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:495:1,218:45,45:323 +1 12697611 rs146900650 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:543:119,97:170,142:1096 +1 12697716 rs3010935 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:424:70,227:1,158:322 +1 12699337 rs3000891 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:653:0,313:65,356:417 +1 12718127 . T TTTCCTTCC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:403:98,100:0,0:245 +1 12718373 rs2493874 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:510:0,227:64,283:392 +1 12719211 rs2256901 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,279:63,322:416 +1 12736195 rs2256272 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:665:155,136:194,171:1170 +1 12737255 rs2493872 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:128,121:181,166:1100 +1 12746537 rs7524074 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:445:0,177:43,206:347 +1 12746949 rs7532290 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,212:102,314:467 +1 12747049 rs3128448 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:522:0,224:0,224:329 +1 12747595 rs34349655 TAC T 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:192:0,85:0,85:99 +1 12748370 rs61777490 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:123,137:148,168:702 +1 12748755 rs10864575 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:773:0,353:83,423:428 +1 12749578 rs3010943 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:485:0,233:0,233:247 +1 12750723 rs3128450 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:767:115,442:0,314:532 +1 12750772 rs74774831 ATT A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:390:0,184:0,184:198 +1 12750981 rs3010944 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:483:0,199:63,262:378 +1 12753515 rs3010945 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,279:53,312:385 +1 12753614 rs4074727 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:633:145,139:183,168:1040 +1 12754007 rs6541051 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,237:108,345:392 +1 12754569 rs3010948 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:547:0,251:84,303:503 +1 12754600 rs4615852 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:538:0,237:76,299:364 +1 12755429 rs3010949 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:702:0,331:54,371:367 +1 12756341 rs3000879 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,248:99,347:445 +1 12756406 rs3010950 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:626:0,274:90,353:487 +1 12756883 rs7547122 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:12756883_G_A:628:0,283:86,343:473 +1 12756905 rs7525394 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:12756883_G_A:600:0,273:75,333:368 +1 12757671 rs3010951 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:733:0,336:100,406:536 +1 12758726 rs11121960 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:787:0,360:77,437:397 +1 12759173 rs3010952 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:793:1,366:92,438:481 +1 12761361 rs3010864 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:538:0,256:57,304:363 +1 12762178 rs147090307 A AGAGGAAACTAATACAGACTGG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:12762178_A_AGAGGAAACTAATACAGACTGG:480:0,222:84,84:350 +1 12762197 rs3128457 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:12762178_A_AGAGGAAACTAATACAGACTGG:480:0,199:54,54:412 +1 12762217 rs7518170 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:12762178_A_AGAGGAAACTAATACAGACTGG:458:0,191:46,46:414 +1 12762562 rs3000875 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:454:0,200:56,238:411 +1 12762845 rs4471284 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:670:0,319:63,366:416 +1 12763781 rs10779772 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:143,132:161,164:642 +1 12764112 rs3010869 A G 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=5;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:526:38,285:0,0:314 +1 12764655 rs3010871 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:577:0,267:72,317:451 +1 12764919 rs6541053 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:636:0,288:67,349:383 +1 12765166 rs4568844 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:762:0,361:84,410:527 +1 12767225 rs6699747 A G 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=5;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:611:109,366:0,0:524 +1 12768069 rs12128326 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:578:125,123:160,151:762 +1 12768419 rs7520789 G A 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=5;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:752:91,438:0,0:517 +1 12769239 rs3010872 C T 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=5;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:659:87,395:0,0:545 +1 12769379 rs3010873 G C 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=5;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:691:64,390:0,0:409 +1 12770320 rs3000873 T A 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=5;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:721:75,406:0,0:409 +1 12771201 rs3000872 C T 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=5;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:574:73,333:0,0:450 +1 12771232 rs3000871 C T 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=5;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:504:66,295:0,0:425 +1 12771280 rs3000870 T C 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=5;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:63,294:0,0:397 +1 12771365 rs3000869 G A 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidSE75bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:557:74,317:0,0:392 +1 12771713 rs3000868 A G 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=5;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:629:98,369:0,0:456 +1 12773174 rs3000865 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:603:0,262:104,351:490 +1 12774999 rs3000864 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,259:75,317:403 +1 12775704 rs72644531 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:358:88,86:92,89:478 +1 12775814 rs3000863 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:373:0,183:0,171:288 +1 12775851 rs3000861 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:427:0,201:0,179:406 +1 12776134 rs3010874 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,254:75,318:424 +1 12776218 rs3000860 A C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:801:0,264:34,286:428 +1 12776344 rs3000859 A T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:804:0,247:78,315:530 +1 12777320 rs3000858 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:663:0,301:89,365:519 +1 12777361 rs35181439 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:622:140,144:157,187:1109 +1 12777931 rs3000857 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:534:0,237:75,302:398 +1 12778598 rs3000856 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,262:89,348:422 +1 12779560 rs3010876 T C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:892:165,145:193,188:1138 +1 12779618 rs3010877 T C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:642:118,148:143,175:875 +1 12786323 rs4240904 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,256:87,337:303 +1 12788113 rs17038468 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:694:0,325:75,382:355 +1 12808201 rs3000918 C G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:537:0,236:106,311:472 +1 12809282 rs72644549 C G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:706:158,167:186,185:840 +1 12825194 rs374661799 CA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:262:4,119:4,119:99 +1 12867810 rs139427535 C CT 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=3;datasetnames=CGnormal,HiSeqPE300x,SolidSE75bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:585:128,120:41,50:910 +1 12898953 rs11121997 G A 50 PASS platforms=2;platformnames=10X,Illumina;datasets=2;datasetnames=10XChromium,HiSeqPE300x;callsets=3;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.,.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:398:105,98:0,0:198 +1 12900997 rs5007448 G T 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:522:156,147:0,0:349 +1 13776368 rs10927560 C T 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:500:121,133:105,106:505 +1 13776570 . T TATA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:485:3,108,143:0,0,0:243 +1 13776570 . TATAATA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:485:3,108,143:0,0,0:243 +1 13781792 rs2999871 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:146,152:168,174:608 +1 13781826 rs2999872 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:657:151,152:175,168:480 +1 13782046 rs2999873 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:13782046_G_A:715:173,141:173,141:986 +1 13782047 rs2999874 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:13782046_G_A:716:173,142:173,142:986 +1 13782197 rs10803321 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:798:183,189:213,213:986 +1 13782805 rs3845601 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:164,152:130,118:818 +1 13782912 rs3845603 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:625:151,135:185,153:466 +1 13783081 rs2999875 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:566:131,110:131,110:858 +1 13783354 rs11580598 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:582:135,105:160,143:676 +1 13783607 rs147095126 A AAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0|1:13783607_A_AAT:394:105,98:0,0:259 +1 13783610 rs199764481 CT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0|1:13783607_A_AAT:404:109,99:0,0:259 +1 13783654 rs72646335 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:495:125,104:0,0:695 +1 13783751 rs3845606 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:140,118:172,158:1016 +1 13784062 rs12070823 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:572:121,145:109,140:774 +1 13784097 rs10927572 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:598:128,145:113,135:586 +1 13784265 . C CAGAT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:337:0,88,91:0,0,0:145 +1 13784265 . CAGATAGAT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:337:0,88,91:0,0,0:145 +1 13784478 rs7530197 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:471:130,127:96,100:717 +1 13784561 rs7537570 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:512:117,100:145,125:640 +1 13784634 rs7537587 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:119,105:159,144:973 +1 13784672 rs7521475 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:500:103,90:160,131:990 +1 13785370 rs6684158 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:13785370_A_G:479:111,108:128,129:795 +1 13785376 rs6687173 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:13785370_A_G:489:111,108:135,131:966 +1 13785485 rs10754872 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:119,125:170,179:1407 +1 13786339 rs12758121 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:469:89,88:121,142:809 +1 13792145 rs60846863 TGATA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:383:98,99:0,0:243 +1 13801707 rs72646354 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:571:125,109:172,158:1235 +1 13807567 rs7524833 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:492:112,109:138,128:871 +1 13807892 rs3013108 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:482:87,104:42,32:902 +1 13808087 rs2999889 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:440:0,199:37,236:289 +1 13808732 rs2924852 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:503:0,214:88,294:458 +1 13808914 rs2940312 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:474:0,205:54,259:332 +1 13808955 rs3013109 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:466:0,189:69,253:358 +1 13810098 rs72646364 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:476:109,114:131,120:548 +1 13812000 rs2999892 C T 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:156,145:103,108:882 +1 13814486 rs71570140 T TTGTG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:314:81,60:81,60:198 +1 13819335 rs72646368 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:475:104,110:125,138:492 +1 13819969 rs354587 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:509:0,247:45,270:384 +1 13823119 rs79888716 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:551:120,106:164,152:1261 +1 13828265 rs354577 C G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:543:0,268:0,268:198 +1 13829419 rs2999899 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:672:142,151:175,202:1352 +1 13830144 rs72646371 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:120,130:148,151:901 +1 13830577 rs3013047 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,262:68,305:444 +1 13830690 rs5772538 CA C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:458:0,202:59,59:414 +1 13830815 rs2999900 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:461:0,216:48,48:377 +1 13831066 rs147858129 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:318:55,72:79,91:544 +1 13832062 rs2924862 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:513:0,243:39,274:323 +1 13832501 rs3013051 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:461:1,194:84,84:554 +1 13833798 rs2990675 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:133,120:172,150:761 +1 13834196 rs2990676 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:13834196_A_G:513:121,106:153,135:748 +1 13834197 rs3013052 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:13834196_A_G:512:121,105:153,134:748 +1 13834449 rs3013053 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:782:151,172:216,230:1255 +1 13834572 rs2990677 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:134,146:172,178:859 +1 13834809 rs2924861 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:637:147,147:191,156:666 +1 13835010 rs3013055 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:758:176,164:219,190:1201 +1 13835978 rs3013056 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:13835978_A_T:563:129,110:129,110:864 +1 13835979 rs2940304 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:13835978_A_T:560:128,108:128,108:864 +1 13837213 rs2990678 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:104,110:145,149:1170 +1 13837629 rs2940305 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:144,145:166,163:892 +1 13838042 rs2990679 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:571:133,115:174,150:939 +1 13838671 rs2990680 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:455:95,106:117,131:701 +1 13839125 rs2990681 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:397:80,70:31,30:853 +1 13839382 rs2990682 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:117,128:145,153:708 +1 13840834 rs2924859 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:441:95,113:95,113:270 +1 13841055 rs2990683 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:576:111,132:45,52:1131 +1 13841295 rs2999865 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:501:131,146:100,123:602 +1 13841632 rs2924858 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:469:82,112:117,144:953 +1 13841780 rs2999866 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:129,145:154,165:1062 +1 13842025 rs2940313 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:518:91,122:136,166:1121 +1 13842681 rs382780 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,267:91,334:517 +1 13843653 rs11799590 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:668:0,286:116,378:558 +1 13844765 rs16851109 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:612:0,257:0,239:596 +1 13844997 rs193283 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,224:109,319:519 +1 13845377 rs4089350 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:415:0,177:74,245:402 +1 13850236 rs10927801 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:644:1,288:88,368:435 +1 13850508 rs2361276 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:623:0,272:94,359:451 +1 13851036 rs4345799 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:779:0,341:108,437:457 +1 13851115 rs4372244 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:767:0,340:98,431:459 +1 13851826 rs70981226 TAC T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,239:47,47:362 +1 13852455 rs12031108 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:497:1,197:99,295:445 +1 13852641 rs12031170 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:482:0,215:71,279:353 +1 13852683 rs2168201 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:501:0,216:81,291:431 +1 13852955 rs12750399 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:649:0,313:57,344:432 +1 13853601 rs12071196 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:722:0,334:59,391:342 +1 13853857 rs12072332 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,260:50,310:323 +1 13853981 rs12066270 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:13853981_G_A:365:0,138:38,38:342 +1 13853989 rs12072384 A C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:13853981_G_A:374:0,140:46,46:363 +1 13854682 rs10927814 C G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,283:57,57:512 +1 13854728 rs141290409 AAG A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:490:0,230:53,53:405 +1 13857420 rs382507 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:440:0,162:42,204:308 +1 13857651 rs34579852 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:441:2,194:41,41:310 +1 13857988 rs142592771 CTGATT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:509:0,226:83,83:388 +1 13858568 rs6429770 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:632:0,293:54,343:352 +1 13858671 rs6688923 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:635:0,287:70,357:392 +1 13859504 rs3856277 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:666:0,322:29,351:270 +1 13860919 rs2492763 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:483:0,201:43,244:302 +1 13862675 rs12738858 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:135,142:160,179:614 +1 13862750 rs6661954 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:665:0,292:125,385:631 +1 13863307 rs12564444 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:685:169,158:40,27:808 +1 13863361 rs72646397 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:136,135:173,162:904 +1 13863632 rs58712305 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:127,130:159,155:957 +1 13865114 rs164946 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:534:0,210:88,298:417 +1 13865181 rs145775018 A AACT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:450:0,203:40,40:339 +1 13865932 rs7554435 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:13865932_A_C:453:0,191:88,279:406 +1 13865933 rs7554437 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:13865932_A_C:452:0,190:88,278:406 +1 13867891 rs4661648 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:548:0,257:47,299:330 +1 13868527 rs164867 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:430:0,200:43,230:347 +1 13868774 rs450218 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,241:78,308:452 +1 13870796 rs404265 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:635:0,291:74,348:431 +1 13870966 rs444516 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:687:0,320:79,378:481 +1 13871924 rs3013060 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,273:31,287:336 +1 13871942 rs3013061 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,272:44,301:359 +1 13872197 rs2990685 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:385:0,153:47,200:330 +1 13872274 rs2492764 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:514:0,203:105,308:447 +1 13872403 rs2483136 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:554:0,254:55,302:374 +1 13872442 rs612824 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:13872442_G_A:616:0,282:84,340:501 +1 13872459 rs612847 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:13872442_G_A:611:0,287:66,328:451 +1 13872464 rs678477 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:13872442_G_A:607:0,286:58,319:432 +1 13872476 rs678489 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:13872442_G_A:607:0,289:54,317:433 +1 13872776 rs391127 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:470:0,228:0,205:362 +1 13872954 rs2779783 G C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:13872954_G_C:548:1,264:71,71:405 +1 13872955 rs58440744 AAAAGTTGT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:13872954_G_C:550:1,266:71,71:399 +1 13873005 rs1671321 A T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:565:2,256:69,69:408 +1 13873128 rs1767678 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:509:1,225:56,280:342 +1 13873444 rs1454862 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:484:0,220:50,265:342 +1 13873563 rs372488 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,258:37,285:324 +1 13873608 rs367102 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:611:0,281:83,342:479 +1 13873974 rs452477 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:583:0,267:59,307:411 +1 13874235 rs588643 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:13874235_G_A:701:0,306:103,397:441 +1 13874244 rs599335 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:13874235_G_A:692:0,307:100,391:408 +1 13874350 rs420288 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,273:69,338:389 +1 13874398 rs369001 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:532:1,234:56,289:307 +1 13874853 rs1610562 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:555:0,261:43,295:324 +1 13876264 rs354581 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:629:0,298:51,328:402 +1 13879402 rs35240023 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:619:0,272:63,335:269 +1 13880696 rs61347141 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:495:0,213:77,290:382 +1 13881042 rs7543349 T A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:546:3,254:3,254:99 +1 13884745 rs34897160 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:642:0,291:59,350:355 +1 13884893 rs58056325 G GA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:638:0,323:0,0:250 +1 13885279 rs12042662 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:731:1,338:1,329:287 +1 13885520 rs354998 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:571:0,253:71,318:414 +1 13885660 rs12045628 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:656:0,305:60,359:384 +1 13887480 rs7529845 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:91,116:137,157:832 +1 13887751 rs7530115 G T 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:511:153,129:0,0:468 +1 13888716 rs34866970 A G 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:387:101,116:0,0:508 +1 13888752 rs392615 C G 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:422:23,213:0,0:575 +1 13888754 rs394530 C T 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:424:120,118:0,0:575 +1 13888790 rs354580 T C 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:464:47,261:0,0:265 +1 13888815 rs433513 T C 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:13888815_T_C:459:112,137:0,0:544 +1 13888819 rs415766 C T 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:13888815_T_C:453:109,134:0,0:483 +1 13889395 rs4661673 T C 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:606:64,342:0,0:364 +1 13889947 rs61709679 G A 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidSE75bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:648:85,374:0,0:427 +1 13890057 rs354579 C G 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:622:50,339:0,0:312 +1 13890765 rs61516987 C T 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidSE75bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:13890765_C_T:485:45,265:0,0:328 +1 13890776 rs58121320 G A 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidSE75bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:13890765_C_T:463:40,256:0,0:330 +1 13890845 rs2990687 A T 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidSE75bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:521:52,289:0,0:336 +1 13891044 rs2924865 A G 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=5;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:599:56,342:0,0:388 +1 13892399 rs400668 G A 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:422:28,227:0,0:262 +1 13892533 rs381990 T C 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:421:42,233:0,0:283 +1 13892599 rs364391 C T 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:452:57,258:0,0:362 +1 13894036 rs454865 G C 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:410:0,216:0,205:231 +1 13895789 rs354584 T C 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:705:58,384:0,0:355 +1 13898554 rs164944 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:13898554_G_A:617:132,149:163,175:527 +1 13898563 rs354585 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:13898554_G_A:636:132,155:168,179:548 +1 13899004 rs695098 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:531:125,132:134,143:629 +1 13899168 rs35698543 T TA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:131,149:0,0:247 +1 13900468 rs655839 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:833:224,174:241,189:1009 +1 13901062 rs369680600 TTTTA T 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:349:88,94:0,0:160 +1 13901217 rs2940302 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:127,124:148,138:405 +1 13901298 rs2940303 T C 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:487:121,125:108,112:405 +1 13932007 rs2788749 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:665:0,308:73,358:484 +1 13932387 rs77713630 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:658:148,150:169,172:592 +1 13932427 rs442112 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:736:164,152:218,202:1310 +1 13932529 rs2604095 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:635:125,156:152,189:688 +1 13934603 rs146751493 AAAAT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:125,124:37,19:312 +1 13937281 rs4391657 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:713:159,169:190,197:1054 +1 13937459 rs2487646 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,255:89,89:508 +1 13938342 rs72633909 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:815:185,194:217,223:1395 +1 13938778 rs11586786 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:685:158,159:181,192:903 +1 13939123 rs72633912 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:146,132:159,168:732 +1 13939383 rs111556520 C CTCCAATTTCTTAT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:727:0,315:121,121:415 +1 13939650 rs11584648 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:687:156,146:197,190:1387 +1 13940011 rs2275385 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:802:182,167:233,220:1460 +1 13940864 rs2486188 C G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:901:1,347:85,413:533 +1 13941631 rs67913176 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:128,141:157,155:728 +1 13942073 rs2487628 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:116,119:174,178:1270 +1 13943185 rs1061610 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:127,145:149,183:797 +1 13943528 rs1539114 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:648:132,155:171,194:1091 +1 13943653 rs5772544 AT A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:531:118,139:93,127:313 +1 13944236 rs3060293 C CTT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:521:0,215:94,94:472 +1 13944568 rs876931 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:106,116:125,153:1002 +1 13945919 rs1935116 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:621:145,124:188,161:861 +1 13946199 rs6703276 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:138,150:157,174:745 +1 13946479 rs1767675 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:694:141,164:184,206:1449 +1 13946497 rs11587701 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:715:149,164:192,209:1407 +1 13947024 rs59835073 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:617:153,132:182,144:894 +1 13947201 rs60293625 C CA 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:120,120:133,141:536 +1 13947905 rs11588651 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:134,124:172,163:1212 +1 13948225 rs1772635 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:571:130,133:157,151:833 +1 13948263 rs12409563 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:565:132,133:148,153:580 +1 13948495 rs112114305 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:128,161:115,140:359 +1 13948877 rs72633929 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:13948877_G_T:503:101,140:108,154:828 +1 13948878 rs72633931 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:13948877_G_T:503:102,139:108,153:828 +1 13949087 rs17390405 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:430:102,95:117,117:1068 +1 13951715 rs12144423 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:13951715_A_G:685:144,153:180,192:935 +1 13951736 rs9662167 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:13951715_A_G:691:138,147:0,0:1390 +1 13951796 rs141906080 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:602:134,115:0,0:1090 +1 13952476 rs7543203 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:783:184,170:234,201:810 +1 13952677 rs7543396 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:645:161,152:173,157:528 +1 13952750 rs7530137 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:151,133:184,156:958 +1 13952814 rs7546219 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:143,140:185,164:917 +1 13952864 rs7515525 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:693:156,167:190,179:830 +1 13954121 rs113464794 TTC T 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:468:0,226:0,0:145 +1 13954168 rs10927912 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:155,143:0,0:823 +1 13954726 rs12408369 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:138,150:156,172:812 +1 13954853 rs10803420 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:672:0,290:111,387:515 +1 13954988 rs12141401 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:583:141,123:166,151:1009 +1 13955152 rs12409667 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:655:124,158:176,198:1198 +1 13956166 rs12410048 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:593:142,140:24,31:758 +1 13956484 rs10803421 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:124,159:158,164:751 +1 13956731 rs4661410 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:700:164,160:199,178:905 +1 13956807 rs68133711 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:136,142:171,174:791 +1 13957014 rs10927914 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:507:95,107:116,127:551 +1 13957058 rs10927915 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:422:83,103:0,0:682 +1 13957363 rs70984271 ACT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:523:117,111:22,22:649 +1 13957405 rs12143609 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:111,140:43,31:857 +1 13973941 rs12728383 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,264:86,348:344 +1 13982248 rs34378802 GTC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:600:125,120:0,0:937 +1 13990291 rs2495030 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:683:152,139:205,190:1260 +1 13996078 rs2495042 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:158,157:176,186:543 +1 13999286 rs12039802 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:589:132,140:155,158:545 +1 13999317 rs12745515 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:623:143,146:166,165:649 +1 14000873 rs1832803 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:121,133:142,152:696 +1 14001018 rs4662010 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:539:112,131:133,162:746 +1 14001867 rs4612622 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:776:182,187:206,207:1050 +1 14002342 rs2095823 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:789:184,167:217,221:777 +1 14002422 rs4431839 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:763:184,167:217,195:1121 +1 14003581 rs2487648 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:143,134:181,156:727 +1 14004623 rs10737913 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:791:168,174:226,231:1359 +1 14005069 rs36117843 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:688:174,143:196,171:951 +1 14007350 rs143332594 ATT A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:544:131,143:103,122:431 +1 14007493 rs10803422 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:571:116,113:29,34:672 +1 14007558 rs10927929 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:119,127:159,166:858 +1 14007649 rs4662013 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:706:163,148:216,177:833 +1 14008269 rs12750451 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:520:118,104:151,142:753 +1 14008734 rs1999943 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:623:132,153:58,39:1163 +1 14009723 rs2487651 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:553:133,122:33,30:882 +1 14010597 rs10754900 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:139,122:162,137:697 +1 14010654 rs10803423 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:427:89,77:14,17:466 +1 14010818 rs149154504 AAAAT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:159,134:12,15:455 +1 14010851 rs10803424 A C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:776:178,175:39,36:964 +1 14012240 rs7545576 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:709:160,173:185,197:1042 +1 14013181 rs4662016 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:793:180,189:202,231:1091 +1 14015636 rs2495047 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:676:157,165:172,178:1067 +1 14015890 rs35118327 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:655:137,165:33,27:809 +1 14015927 rs56248481 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:636:133,151:43,28:685 +1 14017726 rs113463397 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:618:149,119:191,154:1054 +1 14017820 rs6692099 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:702:169,138:212,182:1307 +1 14018430 rs4661439 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:578:141,117:168,141:584 +1 14019186 rs4662018 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:124,142:143,151:695 +1 14020405 rs4077841 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:537:135,113:123,103:598 +1 14021412 rs36032065 AG A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:121,129:56,55:1298 +1 14022094 rs2487657 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:604:132,118:127,115:1084 +1 14023522 rs61183738 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:729:170,169:212,182:736 +1 14024728 rs4662019 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:606:140,141:40,39:1054 +1 14024768 rs11586811 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:582:130,128:45,36:1066 +1 14028493 rs6429793 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:818:200,182:226,214:987 +1 14031732 rs2495061 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:683:162,144:191,187:1256 +1 14031756 rs3795753 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:681:155,149:197,181:1313 +1 14033128 rs2487622 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:151,136:175,172:962 +1 14034316 rs200792048 CT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:507:132,119:110,105:192 +1 14034592 rs6693939 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:693:162,147:193,186:780 +1 14036772 rs2495056 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:133,114:150,145:922 +1 14037570 rs2495055 G A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:14037570_G_A:464:94,112:0,0:251 +1 14037880 rs59155359 G GAATACAT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=3;callsetnames=CGnormal,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0|1:14037880_G_GAATACAT:397:165,141:50,41:912 +1 14037884 rs78888895 T TATC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=3;callsetnames=CGnormal,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0|1:14037880_G_GAATACAT:383:166,139:43,35:1006 +1 14038946 rs10927932 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:129,143:151,166:821 +1 14039629 rs78945459 T TAGAGGTAGAGAC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:147,121:28,45:823 +1 14040481 rs71629841 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:159,140:176,168:404 +1 14040714 rs145790181 GTTGA G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:698:185,135:47,41:1508 +1 14041456 rs61775102 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:804:190,175:223,216:1169 +1 14042309 rs7411176 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:723:158,168:195,203:1123 +1 14043026 rs12049438 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:795:191,187:215,201:1001 +1 14043424 rs12025538 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14043424_A_G:763:182,153:63,37:1122 +1 14043435 rs71570156 C CTT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14043424_A_G:750:187,150:52,42:827 +1 14043609 rs4344326 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:795:0,368:89,441:482 +1 14044110 rs4661441 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:674:0,302:88,382:440 +1 14044176 . CT C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:542:16,156,111:0,136,111:540 +1 14044176 . CTT C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:542:16,156,111:0,136,111:540 +1 14044200 rs4662020 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:641:1,266:114,375:332 +1 14045288 rs35740385 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:527:126,100:160,142:1143 +1 14045394 rs6429794 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:497:97,113:133,160:1286 +1 14045521 rs12755924 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:122,144:144,165:772 +1 14046280 rs35992629 AT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:629:136,156:26,18:534 +1 14048199 rs2495051 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:709:154,175:175,200:864 +1 14052895 rs1989152 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:588:0,279:76,322:502 +1 14053474 rs16852866 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:135,118:164,132:867 +1 14054903 rs10489152 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:640:142,140:187,176:1221 +1 14054970 rs61775107 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:131,146:161,172:755 +1 14055151 rs36074687 GA G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:676:153,150:44,32:853 +1 14055709 rs10489151 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:741:179,159:210,193:1433 +1 14057258 rs2277 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:100,125:146,154:774 +1 14059395 rs33969518 T C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:942:176,178:215,217:1288 +1 14060256 rs1548232 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:774:184,178:221,196:656 +1 14062433 rs1203654 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:756:188,167:215,182:895 +1 14063035 rs1203653 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:852:199,181:254,212:664 +1 14063083 rs36115842 CTGAT C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:788:230,201:0,0:749 +1 14064921 rs1203652 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:870:202,196:232,236:1107 +1 14067208 rs1203631 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:593:132,118:50,55:1262 +1 14067851 rs1203630 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:487:109,102:152,124:923 +1 14068215 . TTGTGTGTGTGTGTG T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:262:51,74:51,74:198 +1 14069648 rs1203629 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:515:106,112:137,146:784 +1 14070826 rs1203628 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:675:150,163:177,190:1335 +1 14072679 rs1203620 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:747:172,161:216,191:771 +1 14073023 rs200807770 TTTTATTTATTTA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:463:150,116:0,0:259 +1 14075529 rs1209513 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:762:0,333:112,436:518 +1 14076565 rs1203619 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:121,139:150,169:963 +1 14080223 rs1211211 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:158,121:178,150:1097 +1 14080682 rs1203682 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:513:105,117:38,41:987 +1 14081238 rs1203681 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:118,125:138,146:787 +1 14083773 rs1203634 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:845:181,176:177,174:1566 +1 14086575 rs1203633 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:754:171,177:195,215:1354 +1 14087114 rs1203632 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:713:172,136:219,187:1535 +1 14090092 rs1203635 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:803:177,188:203,237:963 +1 14096030 rs2235524 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:692:147,175:174,197:941 +1 14096457 rs2235523 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:680:159,146:204,174:1050 +1 14096821 rs1210110 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:863:193,201:226,249:1530 +1 14098042 rs1203671 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:128,105:187,149:1081 +1 14099763 rs10803426 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:765:170,170:205,219:1261 +1 14099898 rs1203677 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:807:182,174:242,211:1261 +1 14100077 rs1203676 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:783:157,179:211,236:1699 +1 14104037 rs1203680 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:509:109,98:150,129:1186 +1 14104624 rs1203679 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:605:153,124:184,141:730 +1 14105139 rs2076324 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:543:143,99:127,85:622 +1 14105298 rs1203678 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:625:145,145:174,162:965 +1 14106394 rs2308040 A ACTC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:141,146:28,40:979 +1 14109114 rs1203651 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:121,134:163,183:1371 +1 14110206 rs1203650 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:164,150:198,163:861 +1 14110417 rs1203649 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:646:165,138:186,160:1040 +1 14111856 rs1203648 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:686:160,164:183,182:976 +1 14112749 rs1203647 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:119,124:73,42:1175 +1 14112766 rs3841673 TA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:522:98,113:53,43:593 +1 14114971 rs979932 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:633:137,133:179,179:1037 +1 14116491 rs1203646 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:607:1,246:118,356:530 +1 14116571 rs3215496 CTT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:110,123:40,34:988 +1 14117239 rs2308039 T TTGG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:463:99,92:45,36:1101 +1 14117425 rs1203645 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:510:127,121:135,126:742 +1 14117876 rs1980472 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:138,132:174,160:949 +1 14118119 rs1980471 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:714:162,148:210,199:1565 +1 14118408 rs1203644 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:712:162,151:201,194:850 +1 14118779 rs1203643 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:821:199,180:234,212:1000 +1 14119085 rs1203642 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:714:170,164:192,193:1051 +1 14119840 rs1203641 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:538:113,108:156,157:890 +1 14120247 rs1203640 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:678:146,153:185,191:1059 +1 14120432 rs1203639 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:640:148,138:172,184:695 +1 14121892 rs1203638 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:137,110:170,143:1183 +1 14123627 rs1203637 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:806:189,194:207,229:1272 +1 14123747 rs1203636 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:745:172,164:223,188:1112 +1 14124110 rs2281169 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:702:133,174:184,216:1180 +1 14124357 rs35014868 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:746:176,155:215,193:1142 +1 14124977 rs61775129 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14124977_T_C:683:167,151:35,37:1163 +1 14124984 rs4025941 C CTG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14124977_T_C:667:165,150:36,39:1151 +1 14125210 rs1015370 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:684:160,146:199,178:898 +1 14125227 rs2744692 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:720:171,164:196,188:1118 +1 14125496 rs2697992 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:635:169,128:186,143:704 +1 14126651 rs760914 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:134,136:164,156:999 +1 14128152 rs2281166 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:119,139:182,174:1316 +1 14130628 rs2281164 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:467:0,233:0,209:331 +1 14130677 rs1203672 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:538:0,244:0,223:474 +1 14130780 rs1203673 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:514:0,210:94,304:441 +1 14133419 rs2697985 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,233:92,314:491 +1 14134154 rs2244634 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,265:88,332:500 +1 14134437 rs2281161 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,256:64,304:369 +1 14135472 rs35366914 CA C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:531:0,218:103,103:528 +1 14136436 rs2235518 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:136,131:163,156:919 +1 14136656 rs76339898 C CATT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:478:0,223:64,64:424 +1 14137051 rs9970194 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:461:0,202:33,235:274 +1 14137190 rs9970255 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,10XGATKhaplo,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:427:0,171:50,221:335 +1 14137575 rs2473234 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:432:0,199:0,199:268 +1 14137801 rs2744690 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:597:0,261:78,336:417 +1 14137908 rs2744689 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,236:60,294:371 +1 14138493 rs2744688 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,215:87,296:405 +1 14138813 rs2744687 T G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:536:0,227:97,97:537 +1 14138827 rs34646499 CG C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:491:0,219:57,57:387 +1 14139196 rs2245197 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,252:77,319:431 +1 14139683 rs2245213 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:594:0,276:80,333:463 +1 14139826 rs2245218 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,260:71,322:419 +1 14140457 rs2235516 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:622:0,284:69,345:344 +1 14141344 rs2235515 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:414:0,186:56,235:347 +1 14141761 rs1203618 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:14141761_C_T:489:0,185:0,0:565 +1 14142002 rs3830763 AC A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,243:85,85:495 +1 14143003 rs1046331 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:648:0,244:78,315:471 +1 14144913 rs6658233 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:371:0,116:0,0:376 +1 14144944 rs2495068 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:322:0,113:56,56:341 +1 14145914 rs1810474 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:713:0,324:90,397:492 +1 14146063 rs2697957 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:723:84,406:0,322:371 +1 14146935 rs2235514 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:600:0,271:87,347:443 +1 14147514 rs2235512 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:621:0,282:71,71:413 +1 14147539 rs60788477 C CG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,274:61,61:419 +1 14147926 . CATTTATTTATTT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:320:103,72:0,0:245 +1 14148007 rs10927937 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:568:0,261:43,304:286 +1 14148441 rs2697971 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:576:0,270:61,314:351 +1 14148790 rs2744685 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:628:0,293:57,332:411 +1 14148982 rs185141865 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:473:97,90:125,115:634 +1 14149179 rs2744684 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:531:0,243:50,293:322 +1 14149197 rs2744683 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,256:80,336:414 +1 14149249 rs2744682 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:546:0,243:67,305:393 +1 14149396 rs2744681 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:485:1,235:38,249:362 +1 14149505 rs2697970 C A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:588:0,285:69,320:373 +1 14149601 rs2697969 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:599:1,267:80,335:445 +1 14149622 rs2697968 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:626:0,284:96,358:479 +1 14149844 rs1046333 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:472:0,211:60,267:363 +1 14150032 rs2697967 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:109,129:159,176:1248 +1 14150116 rs2697966 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:537:0,245:69,302:387 +1 14150138 rs3820012 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:555:122,117:159,154:1087 +1 14150505 rs2697965 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:584:1,232:0,0:338 +1 14150541 rs61508593 CA C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:567:110,117:0,0:1259 +1 14150709 rs2697964 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:14150709_C_T:523:0,239:63,295:379 +1 14150714 rs2744680 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:14150709_C_T:519:0,236:61,290:383 +1 14150740 rs2697963 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:548:0,236:96,323:476 +1 14150992 rs2697962 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:650:0,301:65,354:413 +1 14151277 rs41269811 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:537:136,114:22,30:664 +1 14151670 rs2744679 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:501:100,125:34,17:468 +1 14151718 rs72637672 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:562:133,116:47,32:912 +1 14152152 rs58504586 T TC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:529:0,225:85,85:457 +1 14152217 rs2744678 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:607:0,251:98,349:394 +1 14152287 rs72637674 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:669:153,139:202,162:1218 +1 14153148 rs72637677 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:128,131:140,152:319 +1 14153333 rs2697961 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:468:0,211:54,259:351 +1 14153837 rs2697960 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:543:0,249:74,74:508 +1 14153897 rs34028828 AG A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:493:1,217:50,50:390 +1 14154723 rs2744677 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:637:0,295:57,338:360 +1 14154806 rs149580705 A AGTAAACTTACCTGTTTCTG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=3;callsetnames=CGnormal,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1/1:.:370:0,256:114,114:304 +1 14155402 rs7520386 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:512:0,212:86,294:449 +1 14155678 rs2473231 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:479:0,215:59,271:358 +1 14157577 rs2697983 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:596:0,278:61,316:406 +1 14158755 rs1881561 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:665:0,319:60,350:438 +1 14159979 rs140838166 CCAGT C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:139,125:29,20:766 +1 14160754 rs982510 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,239:104,328:505 +1 14161921 rs932369 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,262:89,335:492 +1 14162023 rs1203690 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,248:68,296:446 +1 14162680 rs1203689 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:663:0,300:109,375:574 +1 14163204 rs1203687 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:711:85,407:0,314:339 +1 14163428 rs1203686 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:625:0,290:71,345:421 +1 14163589 rs70984286 GT G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:212:0,81:0,81:99 +1 14163699 rs1203685 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:463:0,176:45,221:306 +1 14163770 rs142658112 AT A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xGATK;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:111:1,109:1,109:99 +1 14163893 rs1203684 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:579:0,242:85,325:441 +1 14164191 rs57163823 C CCCTCCCTT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:365:0,184:0,0:247 +1 14164286 rs1203683 C A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,272:67,67:485 +1 14164726 rs56068495 T TC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:578:0,244:86,86:463 +1 14165191 rs68184904 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:319:30,165:0,0:268 +1 14165381 rs61775153 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:533:1,259:1,259:254 +1 14165753 rs6691580 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14165753_C_G:631:0,309:31,340:273 +1 14165754 rs6691581 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14165753_C_G:631:0,309:31,340:273 +1 14165824 rs6696356 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:702:63,386:0,323:255 +1 14167214 rs6657010 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:561:0,266:39,305:293 +1 14169714 rs1203655 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:783:191,185:210,196:1250 +1 14170881 rs72637698 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:593:136,124:178,161:1029 +1 14178205 rs56363765 T TA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:655:4,286:64,64:354 +1 14178320 rs1203625 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:656:0,295:77,360:388 +1 14180930 rs1203622 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:691:98,396:0,298:388 +1 14194816 rs72639014 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:635:128,147:173,188:1115 +1 14196411 . A ATCTTTCTTTCTT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:263:0,79,67:0,0,0:142 +1 14196411 . ATCTT A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:263:0,79,67:0,0,0:142 +1 14199650 rs70984290 GA G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:454:108,105:108,105:99 +1 14202453 rs2143089 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:674:0,303:86,376:475 +1 14205571 rs2744656 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:668:153,152:179,183:995 +1 14206095 rs7521479 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:594:118,135:175,155:792 +1 14206239 rs7524518 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:14206239_T_C:504:95,83:51,41:1183 +1 14206257 rs7521678 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:14206239_T_C:573:127,100:167,143:1113 +1 14206327 rs10803427 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:517:144,73:23,17:455 +1 14206358 rs10803428 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:14206358_G_A:486:137,59:21,21:959 +1 14206917 rs10803431 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:809:178,191:44,53:1187 +1 14207404 rs1203693 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:796:183,177:211,218:1450 +1 14208024 rs10754901 C T 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:783:226,201:176,157:999 +1 14208488 rs1203696 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:851:197,187:245,228:1138 +1 14209290 rs1203697 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:765:150,198:185,236:1122 +1 14209659 rs1919410 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:792:192,180:216,213:1329 +1 14209686 rs1203699 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:722:173,172:193,190:917 +1 14209826 rs1919411 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:737:157,173:190,218:1099 +1 14209941 rs4557966 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:722:152,182:182,210:899 +1 14210730 rs10737914 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:115,121:161,158:957 +1 14211037 rs11810303 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:119,139:131,155:759 +1 14211348 . C CTCCTTCCTTCCT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:273:58,74:0,0:244 +1 14211629 rs10803432 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:487:104,112:128,142:708 +1 14212416 rs10927945 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:14212416_A_G:741:168,168:54,48:1661 +1 14212417 rs10927946 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:14212416_A_G:740:169,166:54,48:1661 +1 14212446 rs70984293 CTGTTTCTCAT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:663:151,145:61,34:1057 +1 14212486 rs1203713 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:668:147,164:44,47:1388 +1 14212530 rs10927947 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:574:119,128:157,166:1180 +1 14212639 . T TATCCATCCATCCATCC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:410:114,94:0,0:259 +1 14212688 rs1203712 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:670:201,188:0,0:1315 +1 14213491 rs112175718 C CAGGAAGGA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:130,130:16,25:520 +1 14213731 rs1203711 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:662:152,148:190,177:1293 +1 14214306 rs2223476 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:14214306_A_T:662:154,144:49,43:1464 +1 14214311 rs2223475 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:14214306_A_T:644:149,145:45,41:1369 +1 14214348 rs1528787 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:624:138,152:41,33:1039 +1 14214412 rs1528786 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:721:173,159:205,177:1124 +1 14214474 rs1528785 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:711:159,149:206,189:1358 +1 14215047 rs9787284 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:121,119:155,140:831 +1 14215074 rs2884820 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:516:118,107:153,137:980 +1 14215209 rs5772552 T TG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:95,129:34,43:946 +1 14216203 rs2744652 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:14216203_T_C:648:147,142:199,159:828 +1 14216213 rs12046889 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:14216203_T_C:638:144,142:184,170:1023 +1 14216887 rs2744651 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:800:190,180:219,214:1250 +1 14216926 rs2744650 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:811:183,188:227,213:1363 +1 14217159 rs2697973 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:775:193,165:214,201:1434 +1 14217674 rs2744649 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:730:155,174:195,201:1113 +1 14217810 rs2697974 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:631:143,136:143,136:354 +1 14218867 rs2744648 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:587:129,137:159,163:878 +1 14219038 rs2697975 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:629:137,150:172,173:923 +1 14219864 rs2206287 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:723:158,171:195,203:700 +1 14220896 rs58728430 TA T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:518:149,135:116,110:395 +1 14220942 rs2744647 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:121,113:152,155:1021 +1 14221527 rs2697978 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:635:152,138:175,175:1173 +1 14221653 rs2744646 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:148,144:162,156:811 +1 14222486 rs34519972 A AT 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:600:146,167:122,137:391 +1 14223572 rs10927948 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14223572_C_A:604:132,143:160,177:1089 +1 14223573 rs10927949 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14223572_C_A:605:132,144:160,178:1089 +1 14224680 rs2038096 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:640:132,153:169,192:958 +1 14224999 rs2038095 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:717:161,158:196,196:1236 +1 14225175 rs2038094 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:628:136,144:168,180:1125 +1 14225666 rs12408392 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:594:136,144:136,144:258 +1 14227230 rs2744644 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:143,150:167,186:1127 +1 14227867 rs7541948 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:704:160,166:181,201:1261 +1 14228077 rs6429800 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:640:0,263:0,239:616 +1 14228227 rs6429801 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14228227_C_G:648:0,284:113,371:604 +1 14228236 rs6429802 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14228227_C_G:661:0,295:112,378:603 +1 14228356 rs56074434 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:634:134,139:174,191:1299 +1 14228490 rs1203709 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:130,134:169,180:1297 +1 14228561 rs56402272 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:145,122:189,168:798 +1 14230173 rs1203708 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:658:0,274:0,246:679 +1 14231834 rs1203707 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:619:0,287:68,340:405 +1 14231992 rs1203706 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:599:0,277:71,325:377 +1 14232050 rs141378918 CT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:547:108,128:36,37:1021 +1 14232061 rs1203705 T A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:556:0,253:73,73:695 +1 14234018 rs1203704 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14234018_A_G:455:0,184:66,250:285 +1 14234026 rs1203703 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14234018_A_G:484:0,190:84,274:331 +1 14234518 rs72639048 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:640:160,125:189,164:1148 +1 14235162 rs72639049 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:621:145,133:47,48:1407 +1 14237101 rs2697993 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:571:0,256:62,309:394 +1 14238420 rs72639055 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:130,130:164,155:1076 +1 14241334 rs1203700 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:638:0,294:86,362:467 +1 14243060 rs1203701 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14243060_T_C:641:146,148:175,174:1102 +1 14243061 rs56316225 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14243060_T_C:641:146,148:175,174:1102 +1 14243517 rs10927953 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:667:164,132:204,172:1403 +1 14244846 rs1609356 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:770:167,179:217,206:1228 +1 14245434 rs66493815 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:705:201,187:152,152:700 +1 14245737 rs10803436 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:148,145:157,164:1025 +1 14249565 rs10927957 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:647:145,152:174,175:936 +1 14249676 rs72639066 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:756:180,171:204,199:1150 +1 14249960 rs34338528 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:481:110,94:121,108:374 +1 14250509 rs1203702 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14250509_G_T:543:0,253:58,297:318 +1 14250519 rs6674966 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14250509_G_T:577:131,129:166,154:908 +1 14250529 rs61777397 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14250509_G_T:593:130,130:170,167:1099 +1 14250674 rs6429804 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:707:149,167:190,194:1062 +1 14250920 rs7539228 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:705:194,212:147,154:1181 +1 14251066 rs7523267 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:640:144,138:190,178:949 +1 14251580 rs4662045 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:141,146:159,173:1232 +1 14252247 rs1534946 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:539:125,106:169,143:1069 +1 14252372 rs7542884 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:108,121:158,180:1553 +1 14252443 rs61777400 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:120,130:144,156:910 +1 14252557 rs7535860 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:626:103,144:0,0:1526 +1 14252577 rs7543063 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:600:115,143:0,0:1229 +1 14252765 rs7527058 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:566:129,129:162,149:673 +1 14253147 . TAAA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:478:102,127:102,127:198 +1 14253320 rs16853159 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:700:154,150:205,188:1156 +1 14253566 rs10489150 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:751:174,148:231,198:1141 +1 14253821 rs10927959 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:131,129:158,161:1123 +1 14254540 rs6670657 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:738:181,151:221,191:1379 +1 14254636 rs6670754 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:696:163,144:197,195:1576 +1 14254750 rs6661262 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:719:162,162:196,202:1187 +1 14257667 rs6685990 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:732:162,159:210,205:1270 +1 14257942 rs139587494 G GGT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:414:108,93:0,0:244 +1 14258175 rs34486467 CAT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:731:162,159:47,43:637 +1 14258355 rs4662047 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:637:135,144:176,182:938 +1 14259580 rs4662049 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:699:144,155:184,211:1210 +1 14260562 rs4661451 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:696:177,141:203,176:1119 +1 14261284 rs145629288 TG T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:127,134:38,36:986 +1 14261747 . G GTAATAATAATAATAATAATAA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:391:99,97:0,0:259 +1 14261778 rs2008665 G T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:627:141,145:0,0:848 +1 14261897 rs12038482 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:595:129,141:169,149:732 +1 14261909 rs2206585 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:123,138:151,139:578 +1 14262357 . A ATG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=2;callsetnames=HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:193:95,95:95,95:198 +1 14262395 rs7541726 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0|1:14262395_G_A:279:150,129:132,116:286 +1 14262417 rs7554985 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:14262395_G_A:603:148,119:148,119:548 +1 14262422 rs76468707 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:14262395_G_A:584:144,118:144,118:732 +1 14262423 rs7541731 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:14262395_G_A:586:144,120:144,120:732 +1 14262495 rs7555061 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:150,117:176,137:572 +1 14262797 rs10754902 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:574:172,141:135,109:832 +1 14263546 rs70984302 GT G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:512:136,114:113,107:185 +1 14263903 rs6676521 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:783:174,159:234,207:1162 +1 14265131 rs10754903 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:113,142:150,171:1099 +1 14266051 rs6683690 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:530:110,122:146,157:1044 +1 14266563 rs6429808 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:752:168,163:215,208:1322 +1 14266744 rs6429810 A T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:700:156,144:40,46:1005 +1 14267455 rs6687514 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:638:139,150:169,181:740 +1 14267581 rs6697129 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:125,136:160,160:598 +1 14267706 rs6701992 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:639:180,163:135,120:683 +1 14268042 rs12081055 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:143,138:177,166:1048 +1 14268523 rs4662054 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:664:153,151:196,170:766 +1 14268721 rs6656830 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:125,145:170,177:836 +1 14269953 rs1009732 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:14269953_T_A:632:154,206:127,156:352 +1 14269957 rs1009733 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:14269953_T_A:647:162,213:128,159:835 +1 14270180 rs1009734 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:753:180,150:180,150:962 +1 14270876 rs2143413 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:773:205,155:241,178:1165 +1 14272174 . T TTG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:260:7,60,32:0,0,0:146 +1 14272174 . T TTGTGTGTGTG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:260:7,60,32:0,0,0:146 +1 14272338 rs4661453 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:491:127,89:156,115:876 +1 14272770 rs6429812 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:627:146,120:199,160:1214 +1 14274103 rs72639087 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:126,116:158,140:1003 +1 14274833 rs4661454 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:113,121:152,155:1126 +1 14275816 rs75757011 G GAC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:655:152,143:25,37:686 +1 14276042 rs33925692 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:113,130:18,25:561 +1 14277864 rs4661455 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:127,146:161,189:1219 +1 14278118 . GATA G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:287:0,69,100:0,0,0:255 +1 14278118 . GATAATAATAATAATAATAATAATA G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:287:0,69,100:0,0,0:255 +1 14278829 rs35005409 GATAATAATAATAATA G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:379:113,111:0,0:249 +1 14278991 rs7532844 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:699:171,164:185,180:674 +1 14279154 rs56356436 C CT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:140,139:17,33:621 +1 14279193 rs6429813 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14279193_C_T:567:128,135:28,25:842 +1 14279197 rs7525795 C G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14279193_C_T:566:132,135:26,22:825 +1 14280085 rs2206584 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:776:177,158:234,207:1514 +1 14280562 rs2359896 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:692:159,158:195,175:694 +1 14281105 rs78649899 AGTGCC A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:715:175,151:53,27:796 +1 14281300 rs56367264 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:844:180,193:230,244:1644 +1 14281451 rs6678469 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:763:88,431:0,333:497 +1 14282063 rs12756003 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:124,132:146,166:630 +1 14282745 rs11589608 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:727:0,323:72,72:494 +1 14284460 rs12043211 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:681:167,148:185,179:1114 +1 14284508 rs12136489 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:667:141,157:185,182:969 +1 14285838 rs6676708 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:677:150,156:48,44:1234 +1 14286907 rs72639090 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:136,133:177,185:1295 +1 14287551 rs72639091 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14287551_G_A:615:133,118:184,173:1434 +1 14287574 rs72639092 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14287551_G_A:573:135,120:164,148:670 +1 14287649 rs12043481 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:637:146,128:181,172:1258 +1 14287855 rs28712362 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:610:145,148:162,161:1047 +1 14287857 rs12044234 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:609:153,140:158,164:1065 +1 14287919 rs10803439 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:637:149,140:186,165:1126 +1 14287968 rs12090537 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:671:157,148:185,180:1090 +1 14288119 rs12044299 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:586:130,138:155,161:1192 +1 14288306 rs72639093 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:582:116,133:156,183:1169 +1 14288571 rs66994930 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:124,135:168,184:1301 +1 14289220 rs61699359 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14289220_G_T:558:119,96:169,168:1176 +1 14289230 rs35241679 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14289220_G_T:532:0,216:108,321:733 +1 14289884 rs56895065 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:118,131:149,153:827 +1 14290194 rs36170101 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:573:86,321:0,235:338 +1 14290254 . CTGTG C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:271:1,74,54:0,0,0:259 +1 14290254 . CTGTGTG C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:271:1,74,54:0,0,0:259 +1 14290397 rs34456654 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:516:97,131:127,161:1039 +1 14290847 rs12118400 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:627:0,279:80,351:419 +1 14290884 rs12119295 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,255:66,310:351 +1 14290955 rs72639096 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:145,123:163,145:1007 +1 14291910 rs12117960 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:553:0,249:86,305:510 +1 14292022 rs12120325 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:555:0,238:98,332:452 +1 14292070 rs12118036 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,249:95,330:450 +1 14292310 rs1997780 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,236:94,306:521 +1 14293102 rs12140268 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:550:0,260:52,304:356 +1 14293176 rs12144742 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:588:1,260:78,331:435 +1 14293427 rs59499355 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:676:141,183:160,196:585 +1 14294181 rs1883644 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:603:0,270:74,331:429 +1 14294749 rs6429815 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:538:0,233:93,310:470 +1 14295313 rs34220713 CTG C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:597:1,276:61,61:402 +1 14295408 rs28478311 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:153,145:160,161:926 +1 14295462 rs2884821 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:651:0,308:81,355:512 +1 14295579 rs4662062 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14295579_A_C:643:0,299:75,355:454 +1 14295585 rs2884822 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14295579_A_C:633:0,289:78,348:439 +1 14295797 rs12727040 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:604:142,132:169,167:1109 +1 14295813 rs2092433 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,283:90,345:588 +1 14295851 rs2092432 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,287:73,327:484 +1 14295888 rs2092431 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:626:2,293:68,342:433 +1 14296109 rs56116825 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:562:123,128:148,163:1346 +1 14296513 rs10803440 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:664:0,303:97,379:512 +1 14296544 rs10803441 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:690:0,317:87,383:468 +1 14297110 rs10927972 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:651:0,310:80,354:478 +1 14297683 rs10803442 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,266:104,341:552 +1 14297743 rs10803443 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:642:1,270:121,375:542 +1 14297920 rs7543394 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:677:0,314:83,374:483 +1 14298002 rs7511707 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14298002_A_G:661:0,307:84,360:527 +1 14298014 rs7543486 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14298002_A_G:656:0,313:72,349:511 +1 14298090 rs34600098 GT G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1/1:.:140:0,0:0,0:157 +1 14298608 rs34673851 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:762:160,179:203,223:1278 +1 14298761 rs7515235 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:14298761_T_C:751:125,442:0,317:270 +1 14298776 rs7515246 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:14298761_T_C:742:86,420:0,334:181 +1 14299650 rs10927973 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,245:110,319:607 +1 14300004 rs10927974 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14300004_C_A:485:0,218:76,275:447 +1 14300012 rs10927975 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14300004_C_A:493:0,217:84,282:473 +1 14301434 rs12028225 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:648:0,295:91,358:540 +1 14301802 rs12123608 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:131,133:174,175:1234 +1 14302077 rs12024854 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:720:158,185:175,204:978 +1 14302142 rs10927976 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:695:145,174:172,210:1287 +1 14302352 rs10927977 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:777:171,176:225,209:1168 +1 14303731 rs7552001 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:14303731_C_G:819:199,182:44,44:1598 +1 14303732 rs7556509 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:14303731_C_G:818:197,183:44,44:1598 +1 14303756 rs725398 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:808:188,176:56,44:1289 +1 14304769 rs2359900 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:673:173,155:177,167:675 +1 14305286 rs61775615 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:137,141:161,164:956 +1 14306158 rs4662066 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:652:150,139:40,35:948 +1 14306960 rs35774750 C T 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:699:195,188:160,148:821 +1 14307798 rs7524371 A T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:719:167,193:167,193:198 +1 14308565 rs6668130 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:633:130,143:191,175:1230 +1 14308652 rs6672889 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:141,136:183,157:514 +1 14308738 rs34227413 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:112,128:138,163:815 +1 14308932 rs10927979 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:131,133:154,152:525 +1 14309033 rs12029404 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:186,143:152,117:638 +1 14309145 rs12029463 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:145,124:167,145:444 +1 14309710 rs12121969 G T 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:180,158:151,132:647 +1 14310200 rs12732688 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:592:150,124:176,140:420 +1 14310514 rs35607110 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:517:135,92:26,23:544 +1 14310963 rs16853356 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:750:168,172:206,203:1313 +1 14311056 rs4661462 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:793:178,194:209,214:951 +1 14311470 rs12128425 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:691:144,174:169,209:622 +1 14311653 rs12128492 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:613:135,139:21,19:412 +1 14312605 rs2223623 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:795:186,185:220,204:999 +1 14313274 rs12728009 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:518:117,106:147,144:1075 +1 14313555 rs34698365 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:626:137,141:168,180:1081 +1 14314069 rs6429818 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:141,114:173,162:842 +1 14314175 rs147372362 A AAGAG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:143,117:13,21:652 +1 14314353 rs12026392 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:708:151,156:196,208:1366 +1 14314580 rs6678410 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:669:151,168:169,187:956 +1 14314808 rs61775648 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:764:176,182:202,208:921 +1 14315693 rs12030309 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:659:154,159:177,163:831 +1 14316067 rs34985580 GCATT G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:120,148:34,17:435 +1 14316992 rs200016032 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:710:170,139:46,46:1224 +1 14318425 rs12030429 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:130,126:169,169:1248 +1 14318571 rs12034667 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:124,135:177,170:1316 +1 14318639 rs12035545 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:146,149:188,189:1302 +1 14318699 rs12035550 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:666:157,140:186,170:771 +1 14318784 rs148062793 C CTTTA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:653:142,136:49,49:594 +1 14318877 rs34693217 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:662:150,145:190,170:733 +1 14319245 rs35253344 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:138,143:160,175:1003 +1 14319289 rs67650375 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14319289_A_G:628:141,136:180,168:996 +1 14319311 rs58278506 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14319289_A_G:606:125,134:171,173:933 +1 14319344 rs72640538 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14319344_G_A:632:132,141:178,181:1160 +1 14319351 rs57808130 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14319344_G_A:653:138,144:180,195:1379 +1 14319469 rs61775651 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:750:164,171:211,207:1433 +1 14319585 rs12727487 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:147,131:172,161:910 +1 14319607 rs12753627 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:121,128:172,162:809 +1 14319717 rs12738601 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:676:165,158:179,180:955 +1 14319914 rs2050169 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:796:202,153:248,197:1178 +1 14320051 rs988762 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:737:180,165:206,194:876 +1 14320411 rs981462 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:815:201,169:236,210:1259 +1 14320465 rs6698763 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:831:209,174:244,204:1153 +1 14320502 rs6681501 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:817:201,166:250,196:1116 +1 14320651 rs6691183 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:753:167,160:215,213:1476 +1 14320863 rs6693784 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:733:179,151:222,183:971 +1 14320934 rs6693808 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:701:165,137:50,54:1347 +1 14321148 rs6694090 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:627:136,130:54,61:1446 +1 14321350 rs12038457 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:661:210,180:0,0:1509 +1 14321366 rs201305212 T TAAAC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:433:123,97:0,0:259 +1 14321565 rs12038517 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:676:170,135:53,44:1208 +1 14321583 rs12037694 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:668:173,130:48,43:1283 +1 14321963 rs7512157 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14321963_T_C:685:152,152:194,174:759 +1 14321969 rs7549907 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14321963_T_C:655:147,150:186,166:645 +1 14322060 rs7541242 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:719:147,178:198,207:904 +1 14322119 rs10927982 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:715:157,173:195,194:848 +1 14322259 rs12754217 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:612:126,146:35,30:668 +1 14322324 rs12743327 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:675:150,153:188,187:1033 +1 14322389 rs11585369 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:709:164,153:204,190:939 +1 14322486 rs12738887 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:629:136,116:184,161:1513 +1 14322519 rs12754561 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14322519_G_C:582:132,119:171,144:902 +1 14322536 rs12754678 G T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:14322519_G_C:581:131,127:40,26:828 +1 14322577 rs74314880 C CAGTGTGGT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:546:126,129:36,16:488 +1 14322622 rs12731340 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:527:116,113:33,35:805 +1 14322884 rs1108860 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:497:103,125:121,152:508 +1 14322920 rs1108861 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:116,131:147,162:909 +1 14323013 rs12741996 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:116,122:141,142:573 +1 14323110 rs2005499 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:118,113:158,135:549 +1 14323295 rs2005500 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:120,115:164,148:634 +1 14323521 rs2359901 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:127,132:159,152:640 +1 14323652 rs4391659 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:607:129,123:48,44:1004 +1 14323668 rs3031976 TCAA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:474:109,99:25,26:375 +1 14323733 rs2359902 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:536:129,120:121,115:467 +1 14323765 rs2359903 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:500:108,110:108,110:716 +1 14323796 rs2359904 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:487:100,101:153,133:705 +1 14323924 rs2359905 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:101,138:134,155:1089 +1 14324130 rs12030294 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:511:106,121:143,141:503 +1 14324208 rs12026097 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:585:139,125:171,146:559 +1 14324430 rs6659888 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:122,136:132,158:343 +1 14324496 rs6660002 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:136,151:158,163:483 +1 14324576 rs6660104 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:616:146,142:146,142:330 +1 14324850 rs10927983 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:638:147,151:0,0:558 +1 14324889 rs10927984 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:14324889_T_G:654:153,160:0,0:318 +1 14324905 rs10927985 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:14324889_T_G:633:140,160:140,160:359 +1 14324991 rs10927986 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:123,153:144,165:347 +1 14325211 rs12126798 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:668:160,148:197,170:562 +1 14325333 rs12125352 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:715:165,168:190,194:586 +1 14325360 rs12125380 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:707:161,162:196,185:483 +1 14325398 rs12125385 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:725:166,162:220,183:565 +1 14325629 rs12753900 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:561:128,121:161,144:608 +1 14325758 . G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:682:152,155:180,181:662 +1 14326233 rs12735414 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:129,139:166,171:911 +1 14326441 rs34348834 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:803:217,221:177,193:661 +1 14326590 rs12564965 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:588:135,136:24,17:408 +1 14326776 rs12564354 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:672:153,162:175,187:435 +1 14326943 rs10927987 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:741:177,165:219,178:785 +1 14327080 rs10927988 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:590:128,128:175,152:626 +1 14327121 rs12564957 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:679:155,155:194,171:800 +1 14327286 . G TT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:199:0,0:0,0:141 +1 14327290 rs12725794 G T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:14327286_G_T:433:95,71:0,0:449 +1 14327308 rs10927989 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:356:82,48:0,0:670 +1 14327479 rs10803444 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:14327479_G_A:359:85,53:85,53:630 +1 14327494 rs10803445 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:14327479_G_A:366:89,59:89,59:494 +1 14327529 rs10803446 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:435:105,79:105,79:341 +1 14327567 rs10803447 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:510:110,100:110,100:540 +1 14327832 rs10927990 T C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14327832_T_C:596:158,142:158,142:198 +1 14327838 rs10927991 C G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14327832_T_C:592:154,141:154,141:198 +1 14327872 rs10927992 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:690:209,166:170,144:480 +1 14328031 rs12129911 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:14328031_A_G:686:176,147:25,22:728 +1 14328041 rs12125487 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:14328031_A_G:669:170,143:25,24:624 +1 14328636 rs12754621 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:754:169,164:218,208:998 +1 14329131 rs7544304 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:687:154,156:188,191:969 +1 14331890 rs35304279 GT G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:119,115:38,35:871 +1 14332170 rs34442881 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:691:164,154:198,179:1038 +1 14332658 rs12730232 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:922:220,185:267,244:1331 +1 14334340 rs35797153 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:161,122:177,148:825 +1 14337014 rs10465640 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:132,135:166,161:988 +1 14337070 rs10465641 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:118,138:151,176:1166 +1 14337844 rs2223624 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:130,130:151,169:920 +1 14337926 rs6689299 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:132,121:168,167:1108 +1 14337994 rs6689383 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:583:134,110:188,149:1175 +1 14338328 rs6429820 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:779:188,160:226,201:1301 +1 14339393 rs4662071 T G 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:759:223,185:155,163:530 +1 14341157 rs6429821 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:793:207,157:233,198:1305 +1 14342062 rs1810487 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:337:49,67:37,27:750 +1 14342129 rs1810486 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:14342129_C_T:450:76,106:117,152:1190 +1 14342130 rs1810485 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:14342129_C_T:450:77,105:118,151:1190 +1 14342231 rs2014942 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:88,100:137,149:1267 +1 14342524 rs72640588 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:149,113:183,147:1221 +1 14348553 rs34115388 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:135,120:165,151:1168 +1 14348632 rs35228096 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:131,117:150,131:1093 +1 14349616 rs970723 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:120,125:161,157:851 +1 14351964 rs4662074 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:701:0,312:102,396:532 +1 14352123 rs4661466 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:704:166,149:202,183:1244 +1 14352554 rs2359907 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:728:171,165:182,207:1082 +1 14353071 rs3929673 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:655:141,144:187,188:1362 +1 14353195 rs4662075 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:742:169,173:198,205:1200 +1 14354497 rs35035996 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:569:132,116:181,139:819 +1 14354704 rs142498657 C CTG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,285:81,81:468 +1 14354841 rs34257427 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:629:151,130:196,156:972 +1 14355347 rs6680774 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:645:8,293:41,41:319 +1 14356225 rs9701439 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:534:0,265:0,265:198 +1 14356819 rs12239919 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:464:0,208:51,259:322 +1 14356892 rs7524318 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:305:0,128:43,43:372 +1 14357130 rs149636033 TACAC T 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:262:0,128:0,126:204 +1 14357851 rs4662076 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:786:0,356:0,333:598 +1 14358007 rs7527544 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:648:155,135:187,173:1018 +1 14358424 rs7527934 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:630:0,276:95,360:489 +1 14358807 rs2206587 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:589:0,274:73,317:482 +1 14359097 rs35176877 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:109,120:125,131:896 +1 14359224 rs2206586 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:603:0,285:84,325:555 +1 14359356 rs970898 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:593:0,259:98,336:524 +1 14359675 rs10754904 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:129,135:161,176:1049 +1 14359780 rs7414562 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:126,124:171,156:1132 +1 14359888 rs4233562 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:512:0,246:54,271:387 +1 14361699 rs10754905 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,278:81,333:476 +1 14361749 rs7551069 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,256:64,308:365 +1 14361842 rs7553416 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:633:0,282:78,354:403 +1 14362106 rs59023422 A AGGCATGAGT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:497:104,93:0,0:1012 +1 14363360 rs4662078 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:622:0,281:44,325:318 +1 14363400 rs4662079 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:14363400_G_A:599:0,278:39,317:296 +1 14363419 rs4662080 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14363400_G_A:608:0,270:51,321:331 +1 14363496 rs4662081 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:486:0,216:43,259:312 +1 14364575 rs2359908 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14364575_T_C:639:87,382:0,270:492 +1 14364585 rs2359909 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14364575_T_C:660:101,396:0,273:513 +1 14364963 rs2359910 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,244:76,314:420 +1 14364975 rs2359911 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,238:87,315:462 +1 14365171 rs10733140 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,258:78,318:453 +1 14365527 rs1989572 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,230:97,327:397 +1 14366543 rs34150788 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:515:146,141:113,115:412 +1 14367284 . T A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/0:.:292:0,0,0:0,0,0:160 +1 14367284 . TAAATT A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:292:0,0,0:0,0,0:160 +1 14367399 rs4662084 C A 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:847:210,213:207,209:293 +1 14367543 rs4662085 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:14367543_G_C:675:159,175:155,173:395 +1 14367546 rs4662086 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:14367543_G_C:679:162,174:158,171:448 +1 14367580 rs35642873 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:624:148,153:148,153:253 +1 14367635 rs1079989 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:638:174,141:181,150:842 +1 14367758 rs55722562 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:761:191,170:204,188:979 +1 14367959 rs1079988 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:725:166,177:185,194:749 +1 14368129 rs1079990 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:684:152,174:165,193:1047 +1 14368289 rs4662089 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:755:184,167:216,194:938 +1 14368333 rs10737915 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:763:190,172:208,195:1217 +1 14368549 rs9659901 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:717:176,174:196,183:860 +1 14368587 rs9660152 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:746:157,164:207,219:1510 +1 14368784 rs7514368 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:710:0,330:78,391:466 +1 14368970 rs7545683 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:626:151,140:181,159:789 +1 14369263 rs7545944 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:776:196,163:227,184:1017 +1 14369529 rs10737916 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:807:179,200:205,225:1081 +1 14369729 rs10732306 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:743:180,154:223,180:1062 +1 14370107 rs57731348 GT G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:541:111,137:0,0:331 +1 14370245 rs6657363 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:682:154,147:202,185:1202 +1 14370368 rs6662320 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:633:141,146:166,189:1037 +1 14370454 rs6696618 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:629:132,157:155,188:938 +1 14370481 rs4636455 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14370481_T_C:630:133,157:169,174:871 +1 14370487 rs2359912 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14370481_T_C:607:127,150:159,173:992 +1 14370604 rs70987715 A ATCTC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:448:105,113:14,17:473 +1 14370797 rs2003696 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:617:186,180:128,122:1294 +1 14370885 rs5772559 G GC 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:129,116:13,22:332 +1 14370907 rs761163 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:631:0,300:69,69:437 +1 14371026 rs55798545 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:672:155,165:175,171:837 +1 14371137 rs761162 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:678:155,158:182,185:1135 +1 14371610 rs10754906 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:624:0,293:51,337:331 +1 14371830 rs10733142 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:714:159,163:198,197:1131 +1 14371955 rs6668874 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:730:178,146:235,170:1189 +1 14372049 rs12068070 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14372049_A_G:724:185,155:208,177:1070 +1 14372058 rs12061818 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14372049_A_G:704:179,153:195,173:892 +1 14372093 rs6671878 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:717:0,337:63,383:405 +1 14372163 rs10754907 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:695:149,164:186,197:1030 +1 14372635 rs6664774 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:729:162,162:197,208:1156 +1 14372776 rs10737917 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:797:0,365:103,444:538 +1 14372890 rs200597428 CAT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:627:0,301:34,34:355 +1 14373156 rs4662090 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:602:125,150:149,186:972 +1 14373178 rs4662091 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,254:86,322:373 +1 14373244 rs10928000 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:613:1,272:79,345:415 +1 14373473 rs4661467 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:649:0,299:76,358:437 +1 14374890 . C CT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:420:8,84,99:8,84,99:99 +1 14374890 . CT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:420:8,84,99:8,84,99:99 +1 14375190 rs10928001 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:625:138,143:170,163:512 +1 14375608 rs35449680 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:158,144:179,172:617 +1 14375610 rs12026672 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:645:0,303:21,331:617 +1 14375825 rs148795615 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:557:152,139:134,123:486 +1 14376697 rs56342003 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:14376656_C_T:539:135,133:0,0:198 +1 14376721 rs12756334 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14376656_C_T:523:127,134:0,0:198 +1 14376751 rs7515695 C A 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:504:0,256:0,250:216 +1 14376799 rs12748863 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:605:168,180:123,130:998 +1 14376994 rs35640915 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:150,138:143,131:645 +1 14377073 rs726596 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,260:65,310:417 +1 14377392 rs726595 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:646:156,151:184,160:807 +1 14377643 rs3887249 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:112,157:159,170:739 +1 14377903 rs4662092 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:641:2,265:103,357:358 +1 14377914 rs4662093 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:657:0,290:93,374:466 +1 14377966 rs4662094 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:740:155,170:204,209:1358 +1 14378177 rs4662095 C A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:120,136:153,185:686 +1 14378357 rs10754908 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:129,117:186,159:675 +1 14379022 rs4662096 G T 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=5;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:534:157,147:109,92:1185 +1 14379204 rs729799 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:603:141,121:49,53:1285 +1 14379546 rs761161 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:125,127:154,167:977 +1 14379766 rs2092435 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:641:130,144:178,193:1407 +1 14379806 rs2092434 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:585:128,131:174,153:905 +1 14380326 rs7519048 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:701:161,160:40,48:1175 +1 14380825 rs4662097 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:734:0,322:112,413:528 +1 14381535 rs4662098 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:157,127:183,149:937 +1 14382073 rs56269346 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:126,137:172,177:1193 +1 14382127 rs55986908 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:117,120:146,146:956 +1 14382497 rs34017193 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:581:119,135:57,45:1212 +1 14382646 rs7539258 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:589:0,269:67,325:413 +1 14383724 rs4662099 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:127,100:160,136:786 +1 14383871 rs4662100 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:603:4,265:66,327:358 +1 14384016 rs4662101 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,264:45,284:412 +1 14385135 rs10737918 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:115,122:151,147:1201 +1 14385482 rs56342255 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:523:124,117:149,140:1153 +1 14386559 rs4661468 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,263:87,330:484 +1 14387125 rs727667 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:14387125_T_C:634:151,143:176,160:862 +1 14387134 rs727668 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:14387125_T_C:632:149,145:179,162:869 +1 14387540 rs67251133 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:626:141,126:182,176:893 +1 14387982 rs70987717 AC A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:121,126:40,30:640 +1 14389561 rs4662102 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:705:0,336:68,374:468 +1 14389748 rs9633368 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:648:151,149:178,167:519 +1 14390137 rs10733143 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:603:132,147:147,176:1071 +1 14390782 rs61775664 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:133,105:179,137:851 +1 14390866 rs72641641 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:498:104,96:149,147:1007 +1 14391038 rs72641642 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:597:123,118:190,169:1409 +1 14391070 rs72641643 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:590:119,119:181,172:1488 +1 14394225 rs715340 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:624:150,121:181,169:1457 +1 14394540 rs35539774 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:131,125:139,136:617 +1 14394702 rs12406366 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14394702_T_G:629:0,286:85,347:448 +1 14394717 rs715339 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14394702_T_G:662:0,304:80,360:482 +1 14395328 rs12079570 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:495:68,251:0,0:306 +1 14395538 rs34261462 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:550:0,243:69,310:364 +1 14396735 rs150442971 A AAGGG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,250:67,67:375 +1 14397422 rs12406594 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:563:1,269:70,304:458 +1 14398151 rs12740636 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,238:57,295:357 +1 14399627 rs12746681 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,266:76,321:463 +1 14400202 rs12132512 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,285:60,345:360 +1 14400298 rs148643228 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:617:0,283:49,332:285 +1 14402542 rs8179349 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,246:66,312:343 +1 14404287 rs12407683 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:562:1,249:74,303:439 +1 14404369 rs12408009 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:521:0,228:78,297:384 +1 14406435 rs34471172 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:114,135:173,175:954 +1 14407639 rs72641651 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:674:178,183:0,0:895 +1 14407761 rs12409099 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:652:1,305:74,357:440 +1 14407804 rs12723386 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,272:50,297:412 +1 14408015 rs3817959 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:674:0,304:90,386:452 +1 14408108 rs3817958 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:734:0,347:66,395:425 +1 14408241 rs71570180 C CTTTG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,263:74,74:288 +1 14408367 rs12732799 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,259:56,309:342 +1 14408566 rs3817957 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:14408566_A_C:542:0,244:57,301:321 +1 14408578 rs3817956 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:14408566_A_C:530:0,243:57,300:338 +1 14408603 rs3817955 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:14408566_A_C:529:0,240:55,295:307 +1 14408617 rs3817954 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:14408566_A_C:504:0,230:47,277:315 +1 14408620 rs3817953 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14408566_A_C:513:0,229:57,286:342 +1 14408670 rs3817952 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:579:0,265:82,323:475 +1 14408724 rs3817951 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,247:56,288:377 +1 14408759 rs3817949 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:571:0,262:73,310:463 +1 14408786 rs3817948 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:639:1,299:65,338:448 +1 14408887 rs3817947 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:578:0,277:55,316:371 +1 14408906 rs3817946 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14408906_C_T:506:0,261:35,287:313 +1 14408910 rs3817945 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14408906_C_T:512:0,263:39,293:310 +1 14408911 rs3817944 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14408906_C_T:510:0,261:39,291:310 +1 14408928 rs3817943 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:483:0,232:38,266:294 +1 14409075 rs3817942 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:503:0,239:50,274:373 +1 14409096 rs3817941 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:497:0,245:43,271:355 +1 14409115 rs3817940 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:509:0,243:57,276:402 +1 14409284 rs12409466 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:629:0,291:57,348:339 +1 14409354 rs12409475 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:163,146:185,169:914 +1 14409472 rs12738499 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:495:0,173:50,50:402 +1 14409641 rs12726407 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:718:0,334:87,392:476 +1 14409685 rs12726425 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:790:0,360:114,443:587 +1 14409709 rs12726437 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:779:0,374:82,415:497 +1 14409786 rs12738981 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:732:0,343:75,402:444 +1 14410109 rs35028645 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:718:0,335:106,399:614 +1 14410212 rs16853565 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:690:0,310:86,382:463 +1 14410738 rs12409852 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,230:78,289:475 +1 14411201 rs12410169 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:688:84,392:0,299:457 +1 14411213 rs11589557 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:713:0,316:99,410:460 +1 14411230 rs11587396 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:712:71,393:0,320:309 +1 14411709 rs12138583 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:785:0,367:79,427:468 +1 14412695 rs71570181 G GTTTAT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=3;callsetnames=CGnormal,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1/1:.:395:0,313:82,82:300 +1 14412899 rs35174898 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:702:0,332:70,388:425 +1 14413031 rs12139298 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:835:187,192:47,46:1328 +1 14413237 rs12139399 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:750:0,361:61,399:432 +1 14417013 rs34537457 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:669:159,158:174,178:1016 +1 14418186 rs10928003 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:702:150,162:197,203:1010 +1 14418448 rs10928004 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:690:161,153:196,173:907 +1 14424893 rs6661697 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:636:148,120:55,50:1235 +1 14436717 rs6699506 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:667:0,296:90,367:498 +1 14439042 rs7515917 T C 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=5;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:633:85,377:1,258:540 +1 14441384 rs7519796 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,275:93,340:532 +1 14441553 rs10803452 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,255:74,315:432 +1 14441610 rs10928015 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:601:0,273:71,331:432 +1 14441738 rs10928016 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:671:0,296:97,376:514 +1 14442249 rs140927228 AGGAAAATGT A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:532:0,256:35,35:326 +1 14442355 rs10928017 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:601:0,284:57,330:388 +1 14442740 rs72641677 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:611:145,134:24,28:644 +1 14442779 rs145407079 GA G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:539:0,247:47,47:360 +1 14443255 rs7549779 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:561:0,262:43,303:312 +1 14444425 rs2157565 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:121,133:152,152:1064 +1 14444995 rs56067444 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:710:159,158:46,41:1121 +1 14445584 rs4573511 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:650:0,285:85,370:385 +1 14445793 rs916430 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,279:68,324:454 +1 14446220 rs77826294 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:665:148,155:174,186:1066 +1 14446418 rs148255728 T TCCAATTTAATCTTCACAGCAGCC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=3;callsetnames=CGnormal,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1/1:.:348:0,227:121,121:333 +1 14446517 rs4662104 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:615:0,286:77,341:454 +1 14446887 rs10803453 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:121,109:153,148:926 +1 14447268 rs6670156 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:552:0,247:94,306:558 +1 14447657 rs2213849 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,246:107,330:555 +1 14447897 rs12066491 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:538:126,120:152,140:845 +1 14448133 rs55932232 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:138,115:179,150:978 +1 14448184 rs4662105 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,241:103,332:508 +1 14448388 rs4662106 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:519:124,99:163,133:1263 +1 14448398 rs4662107 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:482:1,210:90,275:843 +1 14448424 rs4662108 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:450:1,201:59,245:339 +1 14448469 rs4662109 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:473:0,209:73,266:437 +1 14448571 rs4662110 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:477:110,110:123,134:796 +1 14449136 rs2359942 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:625:0,287:93,346:563 +1 14449321 rs763248 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:131,142:162,172:600 +1 14449771 rs744007 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:605:0,267:96,355:470 +1 14450545 rs10429936 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:677:0,306:86,378:414 +1 14450577 rs10429937 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:704:0,316:103,401:530 +1 14450771 rs10429938 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:590:1,270:68,325:398 +1 14450863 rs10429939 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,246:87,316:448 +1 14451204 rs5772563 G GT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:617:0,284:53,53:381 +1 14451556 rs10429929 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,240:78,303:466 +1 14452246 rs2001150 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,242:99,334:441 +1 14452369 rs4661472 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14452369_A_G:434:0,181:84,235:513 +1 14452380 rs4662111 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14452369_A_G:425:0,178:77,77:493 +1 14452426 rs4661473 C G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:336:0,135:58,58:424 +1 14452709 rs12068639 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:628:0,283:83,345:476 +1 14452894 rs12066020 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14452894_C_T:617:0,285:81,81:580 +1 14452903 rs12061899 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14452894_C_T:627:0,293:83,346:494 +1 14453003 rs4578218 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:712:2,336:74,371:503 +1 14453131 rs70997115 T TA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,283:0,0:244 +1 14453176 rs2884839 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:675:60,372:0,0:596 +1 14453185 rs2884840 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:691:167,140:200,172:829 +1 14453429 rs7519861 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:600:0,249:109,358:420 +1 14453475 rs7519955 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:584:0,257:74,329:403 +1 14453513 rs7527226 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,271:63,334:361 +1 14453596 rs12029121 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14453596_A_G:615:0,284:63,63:424 +1 14453779 rs10928025 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:691:0,323:66,371:426 +1 14454092 rs6668059 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:593:0,272:84,334:487 +1 14454128 rs6675758 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:611:0,261:126,355:626 +1 14454189 rs6658394 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14454189_G_A:572:0,266:78,321:469 +1 14454194 rs6668158 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14454189_G_A:583:0,269:81,327:491 +1 14454211 rs1018824 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14454189_G_A:625:0,289:96,352:557 +1 14454299 rs1018823 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,273:0,256:272 +1 14454511 rs72641694 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:129,113:168,152:1076 +1 14454775 rs10928026 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:568:87,333:0,239:443 +1 14454959 rs1018821 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:547:0,242:77,306:423 +1 14455199 rs1018820 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:617:0,280:93,343:543 +1 14455401 rs1018819 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:657:0,295:107,375:542 +1 14455441 rs4662112 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:658:0,295:94,368:502 +1 14455535 rs4662113 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,277:108,373:515 +1 14455978 rs979574 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:638:0,296:79,355:456 +1 14456260 rs979573 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:653:1,312:0,298:279 +1 14456286 rs12403548 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:730:178,160:170,148:610 +1 14456971 rs4319324 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:825:84,466:0,370:494 +1 14457035 rs6429826 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14457035_T_G:706:48,388:0,0:371 +1 14457036 rs6429827 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14457035_T_G:703:48,385:0,0:371 +1 14457044 rs368521349 GGGA G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:674:0,322:43,43:348 +1 14457085 rs4364876 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:675:0,313:75,75:476 +1 14457123 rs5772564 A AAGT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:622:0,296:55,55:391 +1 14457230 rs717538 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:687:2,325:69,379:414 +1 14457612 rs10803454 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14457612_A_G:545:0,259:49,296:356 +1 14457622 rs10803455 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14457612_A_G:543:0,250:62,302:385 +1 14457632 rs10803456 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14457612_A_G:551:0,263:55,300:416 +1 14457748 rs10754909 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:594:1,278:62,321:342 +1 14457777 rs10754910 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:623:0,291:61,344:361 +1 14457807 rs10489146 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:607:0,284:64,331:414 +1 14458008 rs7542729 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:630:0,298:80,346:439 +1 14458092 rs7535589 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:616:0,275:109,355:567 +1 14458147 rs7540070 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14458147_A_G:554:0,252:63,307:217 +1 14458157 rs7540072 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14458147_A_G:537:51,300:0,246:226 +1 14458184 rs7540083 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14458184_A_T:571:0,262:73,327:422 +1 14458193 rs7540087 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14458184_A_T:589:0,259:90,339:476 +1 14458516 rs10928027 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,256:57,302:390 +1 14458537 rs10928028 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,259:81,322:460 +1 14458859 rs6684998 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:436:0,193:61,251:352 +1 14458969 rs6689825 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:526:0,237:65,288:403 +1 14459141 rs2187942 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:625:0,286:62,339:388 +1 14459259 rs1041930 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:564:0,259:64,311:389 +1 14459440 rs1041929 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:608:0,273:86,345:447 +1 14459498 rs1041928 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:654:0,300:68,355:391 +1 14459690 rs1965005 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14459690_C_T:473:113,85:148,127:992 +1 14459691 rs1965004 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14459690_C_T:470:112,83:147,125:992 +1 14460128 rs10803457 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14460128_G_A:513:1,236:54,280:699 +1 14460133 rs10803458 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14460128_G_A:513:126,108:149,125:718 +1 14460248 rs10754911 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:470:0,218:51,265:332 +1 14460332 rs7542148 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,245:69,293:442 +1 14460356 rs7546559 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:575:0,256:91,326:499 +1 14460619 rs3921124 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:480:2,222:68,265:423 +1 14460643 rs2227241 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:454:0,203:80,256:479 +1 14460680 rs2213848 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:451:1,198:82,254:486 +1 14460986 rs2213847 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:504:0,209:99,303:398 +1 14461135 rs4662114 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:504:0,224:70,289:395 +1 14461180 rs6696867 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,254:98,328:514 +1 14461333 rs6692236 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:625:0,274:90,357:428 +1 14461490 . ACACACACATGTG A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:205:0,0:0,0:145 +1 14461508 . A ACG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/0:.:209:0,0,0:0,0,0:146 +1 14461508 . A G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:209:0,0,0:0,0,0:146 +1 14461562 rs6700340 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,251:74,319:415 +1 14461676 rs6683140 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:547:0,254:52,297:343 +1 14461694 rs6700441 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:554:0,257:48,294:370 +1 14461824 rs10737919 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14461824_T_C:612:0,279:84,340:487 +1 14461834 rs10737920 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14461824_T_C:591:0,279:63,322:420 +1 14461865 rs10737921 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:651:1,295:79,358:459 +1 14462049 rs10737922 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,270:68,320:425 +1 14462146 rs4661474 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,274:77,333:450 +1 14462510 rs4661475 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:668:0,297:94,374:498 +1 14462752 rs4661476 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,237:63,289:394 +1 14463067 rs6671072 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:528:0,225:92,92:541 +1 14463117 rs112338466 A AGTACCCTG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:498:0,225:56,56:302 +1 14463224 rs6671183 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:589:0,250:104,346:489 +1 14463452 rs6671472 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:585:0,253:101,342:475 +1 14463497 rs6686025 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:632:0,276:107,368:526 +1 14464418 rs10803461 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:519:0,248:61,276:428 +1 14464665 rs4662116 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:511:0,222:74,273:453 +1 14464952 rs966927 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:514:0,215:93,302:470 +1 14465147 rs12079101 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14465147_T_C:561:0,238:102,332:984 +1 14465151 rs10928029 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14465147_T_C:546:110,121:158,167:1071 +1 14465353 rs112540839 ATGGCTCTTCCAACAC A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,238:66,66:362 +1 14465450 rs12079247 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:651:0,293:85,367:455 +1 14465791 rs6678827 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:632:0,283:84,357:446 +1 14466015 rs1417146 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,255:76,331:337 +1 14466061 rs1417145 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:631:0,267:100,361:473 +1 14466085 rs1417144 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,245:111,346:404 +1 14466316 rs6696014 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:677:0,302:88,380:441 +1 14466546 rs6696275 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,237:100,319:514 +1 14466750 rs6699488 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,258:72,303:470 +1 14466802 rs6699505 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,271:93,324:578 +1 14466975 rs6684780 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:634:0,306:52,336:409 +1 14467223 rs10928031 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,227:82,309:396 +1 14467294 rs10928032 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:514:0,230:74,289:442 +1 14467379 rs10928033 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,234:76,300:421 +1 14467582 rs4662119 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:14467582_G_T:515:0,228:76,298:423 +1 14467593 rs4662120 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:14467582_G_T:562:0,241:92,324:475 +1 14468077 rs10754912 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:637:0,279:95,366:447 +1 14468456 rs5772566 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:678:0,307:76,76:406 +1 14468792 rs10803462 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:714:0,320:101,402:537 +1 14468901 rs10803463 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:714:0,339:71,386:470 +1 14469986 rs4662124 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:145,136:167,150:853 +1 14470809 rs10928034 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:564:0,259:67,303:438 +1 14472321 rs59963030 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:501:101,126:128,143:572 +1 14474976 rs11586698 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:692:0,330:59,376:392 +1 14475202 rs72643142 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14475202_C_T:627:142,154:162,172:923 +1 14475216 rs56044704 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:14475202_C_T:631:150,147:170,165:900 +1 14475431 rs55737703 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:103,128:160,168:1267 +1 14475695 rs2095976 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:376:0,135:51,186:222 +1 14475892 rs111719154 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:531:112,111:137,151:686 +1 14476437 rs17353924 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:726:2,330:96,408:466 +1 14476490 rs17353931 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:672:0,320:63,363:429 +1 14476584 rs17351732 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:620:0,290:72,335:457 +1 14477137 rs6662072 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:621:0,291:74,340:414 +1 14477154 rs10803465 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:652:0,298:83,362:479 +1 14477523 rs72643148 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:649:174,186:143,151:844 +1 14477694 rs35565059 G GA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:608:0,273:59,59:347 +1 14477944 rs929125 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:689:0,327:61,368:415 +1 14478302 rs56290598 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:678:160,176:172,170:482 +1 14478632 rs10928036 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14478632_C_T:714:1,310:90,399:679 +1 14478641 rs10928037 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14478632_C_T:724:173,147:224,185:932 +1 14479294 rs1856742 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:670:175,137:198,159:955 +1 14479355 rs1856741 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:778:0,356:87,435:434 +1 14479426 . C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:707:156,168:196,198:801 +1 14479464 rs10928038 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:716:148,162:197,209:1205 +1 14479520 rs10928039 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:144,156:188,196:1134 +1 14479674 rs12084632 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:672:165,159:178,176:790 +1 14479777 rs10803466 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:762:0,371:48,398:388 +1 14479817 rs2884842 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:842:203,189:243,203:847 +1 14479911 rs11810057 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:759:176,165:211,203:1130 +1 14479932 rs11810060 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:788:189,166:220,214:1027 +1 14480115 rs199533815 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:123,113:33,27:728 +1 14480179 rs10803467 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:137,146:158,172:548 +1 14480273 . CAAA C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:438:3,78,127:0,64,127:328 +1 14480273 . CAAAAAAAA C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:438:3,78,127:0,64,127:328 +1 14480561 rs56155222 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:742:180,171:198,194:962 +1 14480674 rs6663381 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:770:157,182:203,220:997 +1 14481024 rs6680592 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:679:152,163:171,201:887 +1 14481060 rs6683667 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:661:0,319:60,366:325 +1 14481243 rs72643163 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:802:177,194:207,228:1094 +1 14481281 rs1856740 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:799:0,369:82,439:370 +1 14481448 . T TCTTCCTTC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:337:0,82,88:0,0,0:259 +1 14481448 . T TCTTCCTTCCTTCCTTCCTTCCTTC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:337:0,82,88:0,0,0:259 +1 14481522 rs10928040 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:643:0,279:83,83:469 +1 14481590 rs11810615 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:735:157,158:143,148:1371 +1 14481738 rs6681369 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:682:155,144:203,176:826 +1 14482242 rs6429828 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:141,136:165,159:634 +1 14482303 rs6429829 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:133,133:179,172:969 +1 14483642 rs4662127 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:783:0,358:86,431:448 +1 14483660 rs12567596 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:759:167,175:207,210:878 +1 14483707 rs4662128 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:733:159,158:207,201:940 +1 14484104 rs11587477 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:693:150,156:190,197:1070 +1 14485383 rs7533459 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:690:147,157:195,193:1128 +1 14485651 rs7533748 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:610:139,140:161,166:1084 +1 14485695 rs10803468 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:599:139,143:162,157:911 +1 14486566 rs10928041 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,253:92,334:461 +1 14486691 rs10928042 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:623:1,278:91,354:470 +1 14486898 rs56135492 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:574:147,116:170,141:756 +1 14486951 rs55936209 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:584:156,116:181,133:870 +1 14487044 rs7523393 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:584:1,263:78,324:416 +1 14487096 rs55864990 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:662:145,139:194,184:1286 +1 14487230 rs7532380 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:746:173,158:200,211:1174 +1 14487267 rs7532473 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:725:178,152:213,186:1196 +1 14487284 rs10928043 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:714:161,176:187,197:1099 +1 14487601 rs7523873 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:728:160,169:196,210:960 +1 14487650 rs7523961 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:748:157,172:198,217:1225 +1 14487708 rs1416633 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:744:168,162:202,209:1009 +1 14487966 rs72643175 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:701:141,170:187,210:1048 +1 14488001 rs72643177 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:711:156,164:186,207:1008 +1 14488361 rs55873491 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:715:156,149:211,204:1509 +1 14488494 rs55701220 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:755:176,166:221,196:1096 +1 14489019 rs7545744 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:736:155,136:215,195:1552 +1 14489042 rs143325460 CTT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:467:122,117:97,90:382 +1 14489103 rs7529738 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:579:127,112:38,27:683 +1 14489149 rs7538725 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:544:123,105:32,29:771 +1 14489231 rs7545920 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:115,114:164,149:856 +1 14489962 rs7546077 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:638:135,157:170,180:1073 +1 14490223 rs10928045 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:641:146,148:179,167:785 +1 14490361 rs4661478 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:593:0,269:82,329:483 +1 14490465 rs10803469 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:540:128,118:153,143:981 +1 14490497 rs9803674 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:509:0,241:64,281:377 +1 14490541 rs9287296 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,245:112,341:497 +1 14490629 rs10429930 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:527:120,98:158,143:1170 +1 14491097 rs10429931 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:337:44,63:40,27:650 +1 14491219 rs2157563 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:435:85,99:85,99:791 +1 14491261 rs1978052 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:470:0,193:0,193:720 +1 14491262 rs2157562 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:470:89,104:89,104:720 +1 14491380 rs2185398 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:105,120:149,152:1168 +1 14491498 rs10928046 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:701:143,174:176,203:1107 +1 14491547 rs368476495 CTTAAA C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:715:178,145:59,26:840 +1 14491957 rs12022342 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:675:159,159:178,181:533 +1 14492478 rs10803470 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:152,138:157,149:530 +1 14492567 rs7548610 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:689:0,307:85,385:426 +1 14492626 rs10803471 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:640:129,144:172,193:1054 +1 14492740 rs7539955 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:123,125:150,149:616 +1 14493105 rs80083297 T TGTAA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:713:0,341:53,53:390 +1 14493232 rs16853658 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:786:185,173:220,206:1085 +1 14493270 rs16853662 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:757:180,165:211,204:1103 +1 14493787 rs7542472 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:720:143,166:193,222:1484 +1 14493845 rs7541978 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:646:0,310:61,343:460 +1 14493982 rs10754913 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:493:109,115:132,139:591 +1 14494034 rs10803472 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:505:119,105:144,137:651 +1 14494500 rs7529180 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:462:109,98:134,122:830 +1 14494770 rs6692603 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:583:129,127:165,167:1192 +1 14494949 rs375547598 TTC T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:488:103,78:42,39:1002 +1 14495003 rs10489144 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:527:110,83:144,114:1174 +1 14495070 rs12045417 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:485:106,89:132,119:1155 +1 14495162 rs6692372 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:109,120:149,165:1540 +1 14495694 rs6688168 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:417:88,92:119,116:822 +1 14495822 rs12562042 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:134,125:148,155:1255 +1 14495895 rs10489143 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:122,134:133,156:845 +1 14496041 rs1160541 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:561:133,110:170,143:1140 +1 14496060 rs1160540 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:539:127,111:160,135:1036 +1 14496073 rs1160539 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:521:126,106:152,130:961 +1 14496077 rs4662129 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:523:101,122:141,155:976 +1 14496237 rs11591032 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:727:176,157:202,190:1225 +1 14496292 rs1160538 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:740:162,184:198,209:1178 +1 14496681 rs1339373 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:125,144:163,170:692 +1 14496719 rs1339372 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:686:147,169:179,199:1164 +1 14497223 rs57615340 A AT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:517:2,254:0,0:245 +1 14497239 rs3033860 CAG C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:560:156,123:0,0:259 +1 14497414 rs1832534 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:135,123:179,163:971 +1 14497483 rs1416632 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:657:149,139:195,176:828 +1 14497557 rs2359953 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:811:176,179:230,224:1465 +1 14497985 rs79300008 TGGG T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:726:171,166:43,39:1308 +1 14498026 rs72643181 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:802:193,181:57,31:985 +1 14498254 rs1339371 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:762:176,167:215,203:1101 +1 14498493 rs35700845 A ATT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:664:0,305:67,67:423 +1 14498581 rs1339370 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:717:171,149:205,186:1051 +1 14498915 rs72643184 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:588:130,126:168,159:835 +1 14499433 rs10928047 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:537:115,105:135,141:891 +1 14499496 rs4420076 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:514:107,103:151,134:1061 +1 14499606 rs1339369 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:14499606_C_T:581:142,110:178,158:1440 +1 14499611 rs7554049 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14499606_C_T:590:143,105:184,159:1479 +1 14499659 rs7516285 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:645:148,130:190,180:1385 +1 14499675 rs7513551 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:635:156,129:188,167:1202 +1 14499708 rs7545273 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:665:150,140:185,195:1235 +1 14499731 rs7545280 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:672:150,147:191,189:1296 +1 14500002 rs7556663 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:525:104,120:153,148:1010 +1 14500082 rs7516105 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:565:90,133:153,168:796 +1 14500213 rs12563336 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:577:65,142:71,53:1240 +1 14500294 rs12562715 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:103,137:148,176:1213 +1 14500563 rs4145433 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:682:163,141:202,179:1327 +1 14500589 rs4145434 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:626:149,136:173,169:1316 +1 14500606 rs4145435 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:635:145,147:177,168:1225 +1 14500883 rs10928048 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:114,132:145,166:1029 +1 14500952 rs10928049 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:579:117,142:150,171:1051 +1 14501121 rs12563605 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:611:138,133:185,161:880 +1 14501199 rs12563616 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:643:141,143:179,179:1124 +1 14501296 rs16853705 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:709:148,161:194,201:1110 +1 14501555 rs11800167 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:716:161,153:205,188:1175 +1 14501625 rs1819657 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14501625_A_G:654:135,138:193,188:1436 +1 14501626 rs1814189 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14501625_A_G:654:134,139:192,189:1436 +1 14501801 rs1814188 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:215,170:153,131:873 +1 14501969 rs72643189 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:685:164,136:211,172:938 +1 14502162 rs12028521 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:669:153,155:178,182:930 +1 14502623 rs6702418 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:752:167,173:216,199:1207 +1 14503359 rs72643190 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:781:187,174:219,209:1119 +1 14503730 rs563946 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:829:0,392:67,441:370 +1 14503811 rs76348784 G GAA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:856:0,401:72,72:420 +1 14504546 rs535464 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:149,132:173,163:954 +1 14505595 rs646835 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:702:0,312:92,395:455 +1 14506369 rs476563 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:670:1,307:94,365:557 +1 14506650 rs72643192 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:741:164,176:195,210:1042 +1 14507057 rs10928050 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:726:197,141:228,165:950 +1 14507529 rs526188 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:740:173,167:212,194:1309 +1 14507542 rs675997 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:754:175,161:220,201:1480 +1 14507690 rs10803473 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:726:0,344:77,392:496 +1 14507739 rs10754914 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:724:0,317:116,413:559 +1 14507803 rs10803474 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:672:162,132:52,51:1354 +1 14507831 rs12065331 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:697:0,298:119,119:444 +1 14508673 rs11578035 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:678:139,160:174,206:1228 +1 14508693 rs11580833 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:708:139,165:185,221:1350 +1 14509334 rs12736419 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:718:152,159:195,204:1273 +1 14510164 rs12736835 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:720:161,160:203,192:1260 +1 14510413 rs35499370 GC G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14510413_GC_G:480:0,218:60,60:535 +1 14510419 rs16853740 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14510413_GC_G:484:116,97:38,33:768 +1 14511349 rs517269 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:565:113,128:57,36:948 +1 14512986 rs565765 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:670:149,135:196,180:1326 +1 14513363 rs567039 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:145,136:167,157:962 +1 14514689 . C CGTGT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:239:0,49,59:0,49,59:198 +1 14514689 . CGT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:239:0,49,59:0,49,59:198 +1 14515925 rs6679368 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:745:161,167:218,202:1108 +1 14518946 rs494775 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:615:138,137:168,173:1021 +1 14518979 rs641343 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:604:134,135:172,171:1110 +1 14519387 rs643089 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:675:1,324:71,365:470 +1 14520156 rs35505020 GT G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:337:2,138:2,138:99 +1 14521856 rs17398014 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:487:97,109:140,141:1114 +1 14522006 . T TCACA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:265:0,69,56:0,0,0:150 +1 14522006 . T TCACACA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:265:0,69,56:0,0,0:150 +1 14523180 rs568434 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,269:97,328:572 +1 14523514 rs55777650 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:514:100,126:131,156:997 +1 14524520 rs59293304 A ACAGT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:511:0,243:51,51:350 +1 14525108 rs11578757 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:135,115:172,153:1027 +1 14525288 rs72643202 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:571:141,120:156,149:969 +1 14525524 rs651682 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14525524_A_G:595:140,135:164,160:1299 +1 14525531 rs504469 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14525524_A_G:605:143,132:173,161:1300 +1 14525934 rs653504 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:542:0,254:68,293:462 +1 14526153 rs72644406 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:639:142,155:173,175:1021 +1 14527099 rs56154644 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:789:183,166:230,208:1165 +1 14527518 rs16853785 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:563:133,132:151,148:867 +1 14527823 rs55635659 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:153,147:202,182:1012 +1 14527850 rs515603 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:618:153,128:179,164:958 +1 14528289 rs7525926 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:120,114:150,159:685 +1 14528622 rs820492 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:603:0,263:107,348:503 +1 14530135 rs16853788 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:724:183,150:211,181:1168 +1 14531407 rs529819 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:737:0,343:77,398:461 +1 14533490 rs139956678 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:620:122,124:47,48:1283 +1 14533700 rs9804069 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:659:152,139:180,177:713 +1 14535815 rs494367 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14535815_T_C:634:0,283:79,349:795 +1 14535819 rs72644410 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14535815_T_C:633:150,137:185,162:934 +1 14537861 rs631281 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,244:65,309:383 +1 14539548 rs659483 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:809:0,383:68,435:436 +1 14540736 rs58305285 C CTTTCTTTA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:594:0,259:94,94:376 +1 14541312 rs677769 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14541312_T_C:606:136,134:168,166:1042 +1 14541320 rs72644412 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14541312_T_C:634:140,140:184,170:1065 +1 14543035 rs598325 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:758:0,343:108,425:507 +1 14545399 rs60187814 A ACAT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:684:0,314:75,75:473 +1 14546406 rs1339365 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:658:151,159:169,181:1154 +1 14546422 rs1339364 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:653:144,152:179,183:1246 +1 14546544 rs671440 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:616:0,252:0,231:610 +1 14547078 rs532730 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,244:60,292:368 +1 14547727 rs2027315 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:759:173,178:210,206:1291 +1 14549415 rs579531 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:585:1,260:84,335:381 +1 14549827 rs11588782 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:641:136,141:188,177:1079 +1 14550601 rs72644418 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:662:135,144:183,196:1249 +1 14550729 rs12040954 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:641:142,155:164,180:1094 +1 14552803 rs12047977 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:729:194,209:157,170:826 +1 14553168 rs55735094 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:641:160,132:184,167:1203 +1 14553195 rs12042616 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:678:150,158:194,179:924 +1 14553357 rs35618949 CA C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:625:0,285:66,66:456 +1 14553625 rs34197768 G GA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:119,142:38,37:1034 +1 14553662 rs12723920 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:138,138:51,48:1189 +1 14553812 rs12724109 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:625:139,130:185,168:1196 +1 14554207 rs72644420 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:122,130:147,148:757 +1 14555317 rs553747 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:738:0,339:82,399:473 +1 14555654 rs55710690 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:822:181,179:236,230:1293 +1 14556911 rs56132275 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:805:184,176:215,232:903 +1 14558018 rs12742276 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:645:141,143:183,181:966 +1 14558316 rs12755154 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14558316_T_G:715:179,147:214,179:1087 +1 14558326 rs637709 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14558316_T_G:687:0,322:86,384:667 +1 14559107 rs4565709 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:595:130,140:160,162:783 +1 14559652 rs72644424 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:684:150,140:201,192:1211 +1 14559860 rs72644425 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:734:166,163:213,188:809 +1 14560568 rs12754152 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:675:152,156:186,185:784 +1 14560887 rs6690713 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:524:111,115:20,34:589 +1 14560904 rs34408876 T TG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,237:59,59:319 +1 14561171 rs10803475 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,306:48,334:384 +1 14561671 rs2486318 G C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:726:88,409:0,321:401 +1 14563628 rs12048373 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:140,143:171,164:750 +1 14564701 rs1953828 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:154,133:170,160:829 +1 14565043 rs56264750 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:146,117:196,155:1008 +1 14565312 rs6429831 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:547:0,250:55,298:372 +1 14566248 rs12048987 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:104,125:134,173:758 +1 14566390 rs6698014 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,260:60,308:400 +1 14567111 rs6683875 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:476:0,219:53,260:343 +1 14567243 rs1361336 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:107,130:132,167:1166 +1 14567691 rs12024171 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:114,165:150,196:1047 +1 14569508 rs10803477 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:671:0,305:101,374:575 +1 14571208 rs13374349 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:126,124:140,135:835 +1 14571523 rs7521663 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:487:1,214:62,275:340 +1 14579733 rs6673156 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:14579733_A_G:667:148,142:175,195:967 +1 14579742 rs6668555 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:14579733_A_G:694:153,144:193,199:1204 +1 14579773 rs6673240 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:686:143,155:201,188:1044 +1 14584042 rs3928848 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:504:122,95:148,117:560 +1 14585472 rs55785726 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:142,137:166,156:770 +1 14586318 rs10754915 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,257:82,311:512 +1 14588204 rs6688526 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:644:0,296:74,351:451 +1 14588721 rs6681266 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:705:159,148:205,189:1154 +1 14588963 rs12077532 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:697:155,143:212,184:1305 +1 14589884 rs55766718 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:154,137:200,186:1376 +1 14590116 rs56336875 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:140,162:178,189:1130 +1 14590815 rs72644443 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:128,121:160,146:1028 +1 14591241 rs35637700 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:132,111:183,163:1214 +1 14591600 rs35608962 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:702:156,147:196,202:1427 +1 14591774 rs17394838 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:142,126:170,150:900 +1 14591857 rs35964539 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:134,131:168,167:1135 +1 14593578 rs35943771 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:496:123,98:16,17:474 +1 14594027 rs10754916 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:140,156:173,185:864 +1 14594854 rs10928059 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:730:165,172:192,199:1126 +1 14595818 rs35936892 T TAA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:680:148,149:39,34:892 +1 14597782 rs1416629 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:657:0,296:101,370:556 +1 14598055 rs12406699 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:692:156,152:199,187:1287 +1 14598883 rs34746417 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:729:159,173:199,196:1096 +1 14599035 rs12077051 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14599035_G_C:644:148,136:177,173:764 +1 14599060 rs2039766 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14599035_G_C:654:143,144:185,173:766 +1 14599129 rs71629873 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:123,119:160,151:849 +1 14599634 rs12748026 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:560:120,126:154,162:1079 +1 14600354 rs6694249 G C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:635:151,130:48,32:926 +1 14600514 rs72644446 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:680:155,148:188,182:1170 +1 14601910 rs6429833 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:479:115,155:76,111:900 +1 14601939 . CTGTGTG C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:255:59,65:59,65:198 +1 14603198 rs7555815 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:682:162,149:195,177:1291 +1 14607943 rs1953830 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:147,142:169,153:773 +1 14610940 rs34930590 GCCC G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:505:114,118:29,38:1208 +1 14612723 rs6683535 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:120,140:175,180:1391 +1 14618278 rs11590112 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:118,123:139,149:542 +1 14623118 rs11581550 G C 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=5;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,CGnormal,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:392:126,107:0,0:1501 +1 14623180 rs1970378 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:382:0,122:66,188:370 +1 14625432 rs7527299 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:528:0,247:51,281:363 +1 14626763 rs34475873 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:498:1,209:78,78:358 +1 14626896 rs7543455 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:625:132,131:187,181:1258 +1 14628054 rs72644452 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:125,159:152,175:610 +1 14628444 rs72644454 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14628444_G_A:717:158,165:200,208:1433 +1 14628448 rs6670708 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14628444_G_A:728:166,169:197,212:1580 +1 14629413 rs1416626 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:117,164:144,186:941 +1 14629449 rs1416625 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:617:143,115:202,160:1121 +1 14631437 rs35013885 GT G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:533:131,149:106,128:268 +1 14634803 rs1578131 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:784:181,177:223,204:943 +1 14635279 . C AAGCGTTAGCTAAGATT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_SolidSE75GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:302:0,0:0,0:160 +1 14635289 rs4989594 G T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14635278_T_TAAG:817:187,183:0,0:1317 +1 14635852 rs946481 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:124,148:164,179:1146 +1 14636662 rs13375272 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:134,102:176,147:1009 +1 14636793 rs77183168 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:136,114:163,141:938 +1 14637457 rs13375455 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:666:147,150:174,193:796 +1 14637581 rs13375460 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:153,149:172,171:934 +1 14638642 rs3831909 GA G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:498:125,100:34,33:934 +1 14639101 rs6664943 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:660:165,135:194,177:1142 +1 14639376 rs13375920 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:598:140,129:165,162:1161 +1 14639492 rs13375586 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:679:149,156:187,192:1365 +1 14639921 rs17399514 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:684:158,152:196,184:1181 +1 14640620 rs13373827 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:746:144,197:168,242:941 +1 14641195 rs10927409 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:815:191,174:234,213:1290 +1 14641257 rs13373909 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:793:178,185:216,220:1410 +1 14641510 rs1591856 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14641510_T_A:774:178,172:220,207:1142 +1 14641523 rs1591855 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14641510_T_A:783:182,176:226,208:1048 +1 14641907 rs72644461 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:820:180,206:205,228:927 +1 14642381 rs144726128 A AT 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:700:163,155:26,26:484 +1 14642873 rs55798916 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:775:180,187:195,218:1012 +1 14643341 rs72644464 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:787:190,174:223,203:1117 +1 14643760 rs12566371 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:843:197,203:208,234:846 +1 14643814 rs12566164 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:911:217,219:233,245:1091 +1 14645461 rs72644469 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:697:181,192:165,162:507 +1 14645505 . TTTTATTTA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:402:0,119,112:0,0,0:259 +1 14645505 . TTTTATTTATTTATTTATTTATTTA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:402:0,119,112:0,0,0:259 +1 14648553 rs17399728 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:694:148,157:176,208:1109 +1 14648592 rs16853946 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:681:150,160:182,192:1187 +1 14648662 rs55932169 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:754:172,169:212,199:1103 +1 14648771 rs146173565 A AAAGT 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:730:216,179:0,0:729 +1 14648971 rs16853948 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:149,139:172,164:858 +1 14649178 rs55798641 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:586:145,130:166,151:1116 +1 14649198 rs55786637 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:606:145,135:173,153:876 +1 14649567 rs5012557 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:132,117:160,164:1345 +1 14649876 rs1416623 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:124,108:172,154:1470 +1 14649957 rs7415786 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:656:156,134:196,168:1088 +1 14650679 rs17395713 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:126,144:155,172:1163 +1 14651518 rs72644481 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:571:125,146:143,158:889 +1 14651867 rs72644482 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:699:178,149:191,180:1216 +1 14652782 rs2149507 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:135,137:178,193:1295 +1 14654660 rs820629 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:660:0,307:70,351:469 +1 14656058 rs6663380 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:119,135:141,169:974 +1 14656955 rs820627 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:678:0,304:107,387:469 +1 14657100 rs820626 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:605:183,167:128,129:279 +1 14657493 rs143211087 CCT C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:715:162,165:47,45:1194 +1 14658355 rs72644488 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:693:151,161:185,190:1280 +1 14659358 rs35732267 AG A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:740:155,149:0,0:334 +1 14660572 rs820625 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:506:105,102:134,146:832 +1 14661294 rs820623 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:469:114,117:123,122:652 +1 14661341 rs35268981 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:511:115,126:130,143:1082 +1 14661638 rs58300372 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:425:78,70:124,107:940 +1 14662896 rs6692595 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:754:182,180:199,198:848 +1 14663626 rs703801 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:686:153,161:185,193:1143 +1 14664388 . CAA C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:233:46,36:46,36:198 +1 14664810 rs35218193 G GA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:364:4,175:0,0:255 +1 14665110 rs61309208 T TG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:168,111:20,34:565 +1 14666044 rs703798 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:134,136:165,169:1038 +1 14666443 rs820619 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:137,156:153,190:957 +1 14666518 rs1094082 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:696:0,314:111,386:606 +1 14666593 rs4024608 A ATCACAGAC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:669:140,148:43,56:1028 +1 14667572 rs36093736 TG T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:406:79,94:27,24:651 +1 14667661 rs61163804 TA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:548:0,242:47,47:353 +1 14668255 rs2993796 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14668255_G_C:558:120,144:47,26:928 +1 14668269 rs2993797 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14668255_G_C:587:126,138:58,38:1185 +1 14668801 rs2487751 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:159,151:187,178:1115 +1 14668900 rs2487752 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:701:0,319:89,390:477 +1 14669229 rs12028092 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:595:1,271:62,321:386 +1 14669367 rs12028137 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:705:0,308:103,399:508 +1 14669660 rs4661482 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:615:0,253:109,362:306 +1 14670743 rs2789741 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,225:70,283:393 +1 14670803 rs7513436 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:679:0,298:99,383:517 +1 14671749 rs6672340 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:664:0,305:88,366:524 +1 14672381 rs1417968 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:680:0,319:79,372:487 +1 14672491 rs1417967 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:670:0,298:101,383:514 +1 14672639 rs2794611 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14672639_T_C:567:0,271:48,304:342 +1 14672647 rs957248 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14672639_T_C:566:0,267:55,309:366 +1 14672797 rs12134370 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:137,115:200,151:979 +1 14673271 rs2794612 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:636:0,291:82,346:504 +1 14673385 rs12121975 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:709:0,334:76,387:459 +1 14673496 rs2789748 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14673496_C_T:633:0,309:54,342:371 +1 14673497 rs2789749 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14673496_C_T:633:0,309:54,342:371 +1 14674965 rs820670 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:721:1,325:84,387:492 +1 14675096 rs6429651 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:715:0,333:104,402:548 +1 14676427 rs12037136 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:492:115,89:153,121:926 +1 14676605 rs4661483 G C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:396:2,113:92,92:475 +1 14676909 rs7355173 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,258:67,310:425 +1 14677124 rs72644496 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:574:146,124:155,150:737 +1 14677380 rs12404580 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:612:160,133:174,145:800 +1 14677729 rs12134023 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:533:133,108:156,131:885 +1 14678726 rs3897492 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:772:0,362:0,351:391 +1 14679601 rs12239349 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:750:183,177:198,194:812 +1 14679816 rs4661285 G T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:610:1,257:58,58:415 +1 14679846 rs70997138 A AG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14679846_A_AG:555:0,250:48,48:375 +1 14679863 rs4661484 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:14679846_A_AG:622:0,271:80,80:474 +1 14680899 rs4113453 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:715:0,334:80,387:499 +1 14681140 . G GAC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:290:2,59,70:2,59,70:198 +1 14681140 . GACAC G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:290:2,59,70:2,59,70:198 +1 14681669 rs55882136 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:140,161:145,168:645 +1 14681895 rs144152092 ATATT A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:137,152:0,0:259 +1 14682900 rs4319325 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:646:0,333:0,333:198 +1 14684124 rs10927411 C T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:158,112:158,112:198 +1 14685178 rs4661485 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:692:178,153:198,162:339 +1 14685735 rs10754852 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:624:1,308:0,302:258 +1 14686203 rs115773671 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:630:0,281:74,355:383 +1 14687406 rs10927413 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:156,129:187,163:676 +1 14689316 rs7549911 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:712:162,151:201,195:1431 +1 14690462 rs34042579 AT A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:505:28,233:5,210:234 +1 14690876 rs4661486 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:720:0,331:103,410:526 +1 14691012 rs9887814 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:770:0,362:87,419:509 +1 14692271 rs820671 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:543:1,246:79,314:412 +1 14692598 rs10927414 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,301:50,316:397 +1 14692672 rs7538154 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:666:1,326:67,346:488 +1 14692932 rs7537728 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:625:0,289:76,358:364 +1 14694258 rs7548984 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,262:79,323:473 +1 14695724 rs4639754 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:702:0,320:72,387:355 +1 14696458 rs55907053 AC A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:632:0,301:46,46:404 +1 14696744 rs1360050 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:593:0,262:93,342:486 +1 14697219 rs4661487 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:649:0,294:90,371:464 +1 14697329 rs140398529 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:118,131:167,175:1181 +1 14697986 rs6429653 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:626:1,287:88,351:516 +1 14698609 rs6429654 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:723:0,340:88,394:539 +1 14699053 rs7511861 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,240:88,323:442 +1 14699523 rs10754853 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,243:55,266:436 +1 14699694 rs58491688 AATATATATATATAT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:402:0,222:22,22:311 +1 14700486 rs1539170 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:710:138,182:176,216:1130 +1 14700612 rs943917 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:607:0,274:90,345:512 +1 14700804 rs10803270 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:135,106:184,160:1165 +1 14700850 rs6429655 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:150,119:189,154:1242 +1 14701267 rs703807 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:632:0,286:97,359:433 +1 14702109 rs4661488 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:608:0,271:67,335:369 +1 14702277 rs6675158 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:113,109:132,135:527 +1 14702354 rs6429657 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:605:0,246:83,83:481 +1 14702518 rs17396659 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:625:148,135:174,166:910 +1 14702568 rs3856271 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,280:81,344:422 +1 14703298 rs1556083 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:664:0,306:83,377:447 +1 14703570 rs149030162 GCCATTCTC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:633:0,296:74,74:457 +1 14703854 rs11590846 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:638:147,149:171,172:977 +1 14704441 rs6689141 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:678:0,330:57,360:422 +1 14704676 rs735832 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:668:0,303:84,372:462 +1 14704694 rs3888224 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:636:0,294:75,355:449 +1 14704809 rs59898497 AAAAGT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:131,126:34,23:651 +1 14705127 rs2094605 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,258:52,295:364 +1 14705571 rs35116579 T TAG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:448:0,193:71,71:428 +1 14705856 rs1590799 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,258:102,336:548 +1 14706809 rs820665 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:683:0,313:83,373:418 +1 14708891 rs10927417 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:302:0,141:0,141:198 +1 14709450 rs112344652 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:449:1,223:1,223:198 +1 14709580 rs77569758 G T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:504:0,254:0,254:198 +1 14709839 rs140922807 T G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,291:0,291:198 +1 14712059 rs148147271 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:568:0,290:0,290:198 +1 14712416 rs201688995 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:501:0,253:0,253:198 +1 14712568 rs200197828 C A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:616:0,302:0,302:198 +1 14713214 rs10429932 A C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,298:0,298:198 +1 14713768 rs149817364 G C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:423:0,215:0,215:198 +1 14714246 rs6669069 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:416:0,214:0,214:198 +1 14714327 rs10429934 G A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:476:1,236:1,236:198 +1 14714665 rs12025649 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:516:0,246:32,278:269 +1 14715306 rs10429926 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:665:0,310:57,363:357 +1 14715919 rs6686602 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:683:0,303:81,369:434 +1 14717654 rs1417966 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:528:1,243:50,282:334 +1 14718569 rs58439824 CCTTTAA C 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:480:0,228:50,50:326 +1 14718934 rs7549457 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,256:92,326:419 +1 14720009 rs1328828 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:585:0,265:84,320:511 +1 14721185 rs56131624 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:640:158,144:173,169:888 +1 14721426 rs12025274 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:127,125:152,175:1023 +1 14722510 rs12401863 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:103,115:156,172:1277 +1 14723396 rs33945798 G GTTT 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:573:147,147:129,115:590 +1 14723745 rs61125940 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:131,115:165,133:827 +1 14725665 rs72645911 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:14725665_A_G:486:100,90:0,0:228 +1 14725677 rs72645913 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:14725665_A_G:503:99,107:0,0:401 +1 14725843 rs12048072 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:143,129:192,158:858 +1 14725869 rs943919 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:673:161,139:204,173:1239 +1 14725946 rs12048115 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:138,122:176,145:828 +1 14726000 rs34653293 ACT A 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:438:102,107:28,15:448 +1 14726049 rs943918 A G 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=3;datasetnames=CGnormal,HiSeqPE300x,SolidSE75bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:470:100,107:38,27:763 +1 14726096 rs820668 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:467:0,208:67,265:245 +1 14726123 rs12045738 T A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:485:102,103:137,141:816 +1 14726169 rs12048175 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:467:98,100:140,130:596 +1 14726311 rs56305129 T TAC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14726311_T_TAC:481:92,107:48,46:1488 +1 14726328 rs12045797 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14726311_T_TAC:524:109,118:49,46:1451 +1 14726429 rs12045062 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:125,127:154,153:1021 +1 14728584 rs61313454 TAA T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:752:32,389:0,357:245 +1 14730430 rs35516841 C CAG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:495:108,100:33,41:762 +1 14730725 rs12031559 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:515:117,112:151,137:603 +1 14732019 rs12405445 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:116,120:137,142:841 +1 14732185 rs12033343 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14732185_C_G:462:83,89:135,141:1130 +1 14732199 rs12023531 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14732185_C_G:459:86,86:148,128:1013 +1 14732325 rs12026045 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:135,122:40,44:1241 +1 14732370 rs34841662 C CT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:550:105,128:38,44:983 +1 14732458 rs10927423 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:638:136,161:163,176:844 +1 14732500 rs10927424 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:127,154:159,178:994 +1 14732523 rs10927425 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:136,138:162,162:877 +1 14732605 rs10927426 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:144,127:182,157:845 +1 14732708 rs10927427 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:669:145,162:177,184:733 +1 14732994 rs12410199 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:541:116,122:116,122:452 +1 14733160 rs6680936 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:729:146,175:49,44:1212 +1 14734238 rs138582401 CACAA C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:710:158,156:46,42:1272 +1 14735040 rs5772577 TC T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:594:0,268:63,63:420 +1 14735089 rs866587 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:645:139,152:48,45:1334 +1 14736779 rs113525253 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:138,108:169,155:883 +1 14738391 rs820672 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:833:196,197:228,220:1234 +1 14740155 rs3928343 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:602:105,111:47,33:852 +1 14740456 rs3928342 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:733:199,143:216,169:986 +1 14741334 rs11578816 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:539:108,121:149,157:929 +1 14741575 rs6662750 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:648:143,136:181,181:986 +1 14742103 rs6699064 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:578:135,109:49,45:1216 +1 14742723 rs10754855 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:612:0,285:71,341:420 +1 14743507 . T TACAC 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:309:0,62,84:0,0,0:149 +1 14743507 . TAC T 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:309:0,62,84:0,0,0:149 +1 14743776 rs4308970 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:642:127,151:161,194:1108 +1 14743972 rs4573512 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:153,133:180,141:783 +1 14744392 rs10803277 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:458:107,93:131,117:581 +1 14744881 rs4128690 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:118,121:153,151:878 +1 14745480 rs10927431 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:142,150:159,186:832 +1 14746962 rs11580939 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:567:135,120:169,144:541 +1 14747368 rs12733145 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:468:92,104:41,35:894 +1 14747572 rs6698582 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:148,109:166,147:562 +1 14747699 rs6662671 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:753:180,173:202,199:1175 +1 14747769 rs6665391 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:671:168,146:184,181:722 +1 14748760 rs7531416 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:145,157:169,193:794 +1 14751476 rs6678924 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:682:156,137:211,179:1110 +1 14751585 rs1328827 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:645:149,138:187,170:1021 +1 14751731 rs13374882 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:114,106:157,150:1015 +1 14752175 rs72645924 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:525:116,113:158,132:666 +1 14752603 rs4370760 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:499:0,228:63,274:412 +1 14754108 rs74969614 G GTA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:579:1,287:0,0:246 +1 14754134 rs34950664 CAT C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:694:194,207:0,0:958 +1 14754646 rs6429659 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:729:180,158:208,185:1193 +1 14754760 rs6429660 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:586:146,133:153,156:838 +1 14755792 rs1410753 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:115,155:146,194:1035 +1 14755827 rs10754856 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:119,140:164,182:1339 +1 14759635 rs2183101 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:131,113:162,142:1058 +1 14759950 rs4661287 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:737:0,346:67,399:425 +1 14760594 rs2149503 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:646:154,137:191,169:1000 +1 14760634 rs2183102 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:671:151,151:193,174:886 +1 14761672 rs6680164 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:125,124:146,144:843 +1 14761792 rs6680283 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:122,114:163,153:1325 +1 14762465 rs3889322 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:611:117,146:148,196:1197 +1 14763918 rs3927512 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:705:152,150:208,196:1281 +1 14764233 rs7526202 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,248:67,312:389 +1 14767077 rs7547198 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:120,100:151,151:1115 +1 14767758 rs139665103 CAT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:512:123,131:0,0:143 +1 14767853 rs34210633 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:608:150,139:162,152:571 +1 14771290 rs10927437 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:125,124:159,135:835 +1 14771398 rs12401776 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:119,156:150,169:854 +1 14771897 rs34733252 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:618:130,128:174,180:992 +1 14771996 rs34533856 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:131,133:159,169:865 +1 14772014 rs11586914 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:611:144,130:180,158:907 +1 14772261 rs11586953 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:121,136:161,175:1064 +1 14772774 rs10803278 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:650:133,152:185,186:886 +1 14773075 rs10803279 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:629:145,136:182,171:1040 +1 14773704 . CATT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:291:1,75,77:0,0,0:147 +1 14773704 . CATTATT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:291:1,75,77:0,0,0:147 +1 14774016 rs12134939 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:113,145:133,164:551 +1 14774243 rs4443885 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:130,125:144,159:720 +1 14774937 rs10754857 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:162,134:193,169:1236 +1 14775619 rs72645933 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:685:155,127:148,113:1627 +1 14775805 rs6658316 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:102,140:155,166:607 +1 14776117 rs10803280 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:595:130,130:167,165:1203 +1 14776392 rs6658744 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:668:155,144:187,179:1184 +1 14776616 rs35933063 G GC 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:448:108,90:19,10:246 +1 14776732 rs6659078 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:583:133,121:172,151:1138 +1 14776804 rs6661819 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:121,106:153,136:762 +1 14776860 rs11586732 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:504:110,105:143,137:814 +1 14776945 rs11586746 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:107,121:162,159:888 +1 14777040 rs7550486 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:598:127,139:159,171:859 +1 14777770 rs6662664 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:511:129,109:153,120:575 +1 14777995 rs4463663 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:406:73,98:111,122:660 +1 14778034 rs4436386 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:14778034_A_C:453:128,137:89,98:1132 +1 14778035 rs4463664 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:14778034_A_C:453:127,138:89,99:1132 +1 14778080 rs5772582 A AAG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:342:76,88:76,88:198 +1 14778406 rs6668363 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:14778406_T_C:556:113,127:0,0:546 +1 14779509 rs6671785 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:507:106,101:142,146:849 +1 14779659 rs6671980 T G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:432:74,82:40,30:884 +1 14780107 rs12748818 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:136,121:176,139:502 +1 14780256 rs9728738 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:656:161,122:207,166:1146 +1 14781039 rs6678375 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:685:164,147:183,191:1043 +1 14781111 rs6429662 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:718:158,157:197,205:1565 +1 14781194 rs6429663 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:719:154,176:182,210:1286 +1 14781916 rs17397415 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:130,134:176,168:856 +1 14782255 rs10927438 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:161,132:203,172:1154 +1 14782380 rs6682103 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:739:168,153:225,200:1330 +1 14782517 rs6679666 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:767:168,169:210,221:1041 +1 14782589 rs6690681 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:721:167,163:193,199:1211 +1 14782958 rs12567471 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:676:146,154:188,191:1177 +1 14783356 rs4614253 A T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:500:88,83:35,28:806 +1 14783656 rs7530275 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:785:187,171:213,211:952 +1 14784320 rs10803281 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:163,133:121,98:691 +1 14785752 rs34872267 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:14785752_T_C:632:133,143:0,0:468 +1 14785757 rs34979430 G GTC 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:14785752_T_C:620:129,145:0,0:202 +1 14785846 rs2486768 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:661:143,144:190,182:1095 +1 14786309 rs2486769 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:147,155:173,180:1008 +1 14787082 rs2486770 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:708:166,146:199,197:1346 +1 14787410 rs16850285 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:675:139,165:170,194:738 +1 14787499 rs2480046 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:673:154,136:190,184:1099 +1 14787725 rs2486771 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:134,122:185,167:1048 +1 14787882 rs2480048 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:579:0,255:77,332:385 +1 14788056 rs2480049 C G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:659:1,294:95,367:391 +1 14788274 rs17401833 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:627:154,132:185,154:740 +1 14788938 rs7538477 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:664:0,308:70,369:408 +1 14790344 rs4462131 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:642:149,144:178,176:1146 +1 14790362 rs4233527 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:591:145,129:167,148:718 +1 14790631 rs4661496 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:665:156,139:198,180:1562 +1 14790842 rs10927440 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:648:129,151:172,189:1051 +1 14791623 rs9429256 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:14791623_T_C:510:122,111:151,125:803 +1 14791624 rs115240294 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14791623_T_C:510:123,110:152,124:803 +1 14792535 rs2480054 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:628:135,153:158,175:1054 +1 14792685 rs2480055 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:519:119,105:158,142:1117 +1 14793231 rs9429231 G A 50 PASS platforms=3;platformnames=CG,10X,Illumina;datasets=3;datasetnames=CGnormal,10XChromium,HiSeqPE300x;callsets=4;callsetnames=CGnormal,10XGATKhaplo,HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:463:0,177:43,43:415 +1 14793240 rs55681928 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:460:97,82:25,12:548 +1 14793249 rs9429232 A G 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:465:100,119:0,0:499 +1 14793291 rs11589996 T C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:441:0,214:0,214:198 +1 14793406 rs7534817 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:575:35,299:0,0:343 +1 14793449 . T A 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=2;callsetnames=CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:292:37,37:0,0:217 +1 14793451 . C T 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=2;callsetnames=CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:292:37,37:0,0:217 +1 14793452 . A G 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=2;callsetnames=CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:292:37,37:0,0:217 +1 14793635 rs7545212 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:740:0,351:62,400:409 +1 14794654 rs72645950 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:812:173,181:226,236:1375 +1 14795784 rs1361396 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:692:145,171:181,197:1030 +1 14795967 rs1361395 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:755:167,165:216,215:1368 +1 14796432 rs2480057 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:636:0,282:95,362:495 +1 14797753 rs2480058 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:14797753_A_T:722:151,159:151,159:1152 +1 14797754 rs2480059 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:14797753_A_T:727:154,161:154,161:1152 +1 14799665 rs9429234 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:785:168,194:207,219:941 +1 14799746 rs35739559 T TA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14799746_T_TA:667:149,155:42,22:840 +1 14799752 rs35374050 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14799746_T_TA:696:151,158:45,37:1077 +1 14800247 rs2486774 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:645:144,148:161,164:723 +1 14800305 rs2486773 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:629:0,306:55,332:412 +1 14800369 rs2486772 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:684:161,160:186,176:790 +1 14801153 rs2480060 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:668:147,135:201,188:1651 +1 14801893 rs17402096 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:799:172,189:190,245:1249 +1 14804770 rs12562519 A G 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:432:101,125:96,118:297 +1 14805215 rs4369222 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:120,141:133,159:1014 +1 14806011 rs1887858 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:120,144:142,170:1023 +1 14806750 rs2486764 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:138,138:153,156:667 +1 14807134 rs35939354 G GTA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:720:182,176:0,0:259 +1 14807573 rs2486763 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:626:0,301:38,336:302 +1 14807686 rs2486762 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:736:189,179:183,183:605 +1 14807920 rs76140764 G GAA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:616:135,153:22,22:718 +1 14808571 rs72645956 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:552:108,129:143,167:1145 +1 14808756 rs2480061 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:133,133:177,174:1396 +1 14808956 rs9429235 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:115,140:154,167:725 +1 14809012 rs144741233 GATA G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:123,147:36,17:627 +1 14809267 rs4382718 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:495:107,110:139,137:726 +1 14809507 rs5772584 TTAAA T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:642:148,159:33,22:795 +1 14810262 rs2486761 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:759:170,176:210,209:1253 +1 14810669 rs2480062 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:673:144,159:174,200:1160 +1 14811781 rs2480063 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:629:144,141:161,173:1206 +1 14812831 rs2486760 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:152,163:178,184:996 +1 14812993 rs1934489 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:726:170,166:198,198:1191 +1 14814759 rs10927442 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:160,128:178,150:957 +1 14816232 . A AAATAATAATAAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:431:0,118,118:0,0,0:255 +1 14816232 . AAAT A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:431:0,118,118:0,0,0:255 +1 14816310 rs141599279 AAGG A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:712:167,169:29,21:844 +1 14816452 rs66937192 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:699:181,180:162,178:778 +1 14816465 rs72645962 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:677:176,169:155,174:755 +1 14816980 rs10927443 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:674:151,143:191,188:609 +1 14817323 rs72645964 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:855:198,185:234,232:1323 +1 14818031 rs7537650 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:710:154,160:203,195:1036 +1 14821026 rs10927445 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:125,118:157,139:739 +1 14821610 rs12142754 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:757:169,184:187,214:1085 +1 14822386 rs12132708 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:703:1,325:81,381:482 +1 14824527 rs78355179 TGCTTCTCCTTCACCTC T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:717:177,171:70,36:1190 +1 14825485 rs10754858 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:484:0,226:54,264:368 +1 14825658 rs12136164 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:491:105,116:123,150:840 +1 14825696 rs12125185 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:474:92,114:131,143:726 +1 14826019 rs72645968 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14826019_C_G:541:93,131:141,181:1199 +1 14826029 rs12733612 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14826019_C_G:553:0,230:102,328:808 +1 14826609 rs12086025 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:662:153,126:207,169:1206 +1 14827576 . AAAAT A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:439:0,121,124:0,0,0:160 +1 14827576 . AAAATAAATAAATAAAT A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:439:0,121,124:0,0,0:160 +1 14828082 rs10927446 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:819:202,181:243,204:736 +1 14829451 rs6684542 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:560:1,264:57,286:432 +1 14829647 rs61771914 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:552:111,128:154,159:801 +1 14829664 rs11804898 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:571:122,123:168,164:954 +1 14829793 rs35045692 CA C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:575:0,244:88,88:483 +1 14829929 rs10927447 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:499:119,97:22,22:663 +1 14829931 rs10803282 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:500:0,217:22,22:663 +1 14829945 rs10803283 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:545:1,229:59,59:389 +1 14830814 rs12736830 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:679:153,158:184,190:1238 +1 14830866 rs10803284 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:689:164,145:198,184:1418 +1 14830984 rs10803285 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:669:147,154:174,193:1072 +1 14831066 rs10733135 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,277:92,343:534 +1 14831124 rs10927448 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:134,128:169,161:1092 +1 14831551 rs9943037 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,254:76,318:444 +1 14831727 rs10927449 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:518:0,237:58,286:349 +1 14831919 rs10754859 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:633:0,287:84,349:483 +1 14832701 rs10927450 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:646:154,140:184,167:952 +1 14833225 rs10754860 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:724:0,338:84,399:454 +1 14833932 rs4528111 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:620:144,142:168,172:1070 +1 14834136 rs4617396 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:605:129,139:166,165:1128 +1 14834554 rs139377788 A AC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:133,115:20,33:612 +1 14835704 rs6687219 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14835704_A_C:595:0,272:67,327:413 +1 14835710 rs6687225 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:14835704_A_C:580:0,268:71,326:407 +1 14835764 rs6687304 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:554:0,249:83,310:484 +1 14836495 . TGGG T 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=2;callsetnames=CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:297:45,24:45,24:776 +1 14836645 rs10927451 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,254:62,313:377 +1 14836959 rs6693252 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:620:132,119:184,164:1253 +1 14838731 rs10927453 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:648:0,297:92,370:494 +1 14839485 rs5009206 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:562:1,251:73,310:435 +1 14842253 rs10803286 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,250:76,311:414 +1 14842486 rs12733185 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,252:98,339:458 +1 14842823 rs2310803 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,246:97,313:560 +1 14844830 rs10927457 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:121,106:168,170:990 +1 14844936 rs12408554 G T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:648:150,144:24,29:665 +1 14845146 rs12145915 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:645:145,160:165,181:751 +1 14845459 rs12138326 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:130,134:161,148:887 +1 14845979 rs61771925 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:520:123,115:139,140:757 +1 14846789 rs6429664 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14846789_C_T:511:120,103:156,139:902 +1 14846793 rs6429665 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14846789_C_T:511:122,104:154,141:778 +1 14846801 rs6429666 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:14846789_C_T:524:124,103:156,142:711 +1 14849088 rs3892594 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:692:131,172:174,212:1088 +1 14849448 rs72645979 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:111,132:134,152:566 +1 14849772 rs4279844 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:554:0,222:122,332:550 +1 14849996 rs6673698 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:692:151,132:142,122:1647 +1 14850351 rs7526119 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:127,154:159,187:1075 +1 14850778 . G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:498:113,114:135,137:647 +1 14852050 rs70997156 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:695:157,153:29,41:773 +1 14852177 rs70997157 G GA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:659:149,160:20,22:577 +1 14852370 rs12759765 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:716:162,156:207,195:1427 +1 14853202 rs34504448 CA C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:148,113:36,28:869 +1 14853297 rs12044865 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:140,120:163,144:1176 +1 14854299 rs4233528 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:467:0,205:72,262:417 +1 14855598 rs4661501 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:488:96,103:111,128:441 +1 14857618 rs1890782 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:652:151,125:205,175:1330 +1 14857643 rs2105239 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:686:168,131:211,173:1487 +1 14858676 rs10927458 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:472:0,217:48,258:337 +1 14858951 . TTTA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:407:0,106,110:0,0,0:259 +1 14858951 . TTTATTA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:407:0,106,110:0,0,0:259 +1 14859362 rs6671734 C A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:516:0,235:46,281:209 +1 14859579 rs7540545 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:611:130,141:165,168:1046 +1 14859649 rs7540634 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:628:1,281:84,345:458 +1 14860961 rs185917803 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:121,130:160,187:909 +1 14861873 rs55838206 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:126,135:170,189:1382 +1 14863561 rs1890784 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:154,132:193,158:1133 +1 14863619 rs1890785 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:571:111,146:142,176:974 +1 14864070 rs946734 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:610:1,282:77,330:462 +1 14864122 rs868802 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:14864122_A_C:621:147,139:185,163:1138 +1 14864123 rs868803 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:14864122_A_C:626:149,142:187,166:1138 +1 14864433 rs868804 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:670:161,118:213,174:1315 +1 14864580 rs2211180 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:645:0,301:74,353:447 +1 14864995 rs872579 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:642:160,139:183,159:787 +1 14866026 rs55759200 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:653:143,154:173,183:971 +1 14866366 rs3933358 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:759:0,335:101,426:495 +1 14866488 rs3933359 A C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:682:0,321:87,376:346 +1 14867020 rs4456087 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:631:0,286:79,352:392 +1 14867537 rs7546646 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:644:0,302:59,346:407 +1 14869726 rs3927648 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:626:150,140:170,164:828 +1 14870568 rs10927460 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:750:153,187:38,43:1076 +1 14871358 rs55698600 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:519:105,114:136,152:735 +1 14871496 rs11580401 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,266:67,315:421 +1 14872219 rs12564157 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:648:158,146:171,173:1223 +1 14872308 rs12563496 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:636:151,138:174,166:1163 +1 14873205 rs4276916 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:771:186,152:235,199:1411 +1 14873739 rs11576928 A G 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=5;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:737:218,206:153,158:1207 +1 14874332 rs10927461 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:125,131:154,163:626 +1 14874735 rs12755235 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:490:132,120:102,99:506 +1 14874897 rs12035269 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:104,101:142,134:875 +1 14874964 rs7543183 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:611:0,274:68,339:382 +1 14874999 rs12035313 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:651:148,136:193,169:988 +1 14875147 rs12025585 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:731:168,179:29,34:908 +1 14875284 rs60005057 A AT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:144,123:25,14:582 +1 14875340 rs12035428 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:162,153:177,164:864 +1 14875475 rs12035464 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:743:180,142:63,47:1140 +1 14875595 rs12035490 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:763:186,153:237,186:1061 +1 14875747 rs12035547 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:643:155,142:171,178:1110 +1 14875764 rs12025005 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:143,136:164,171:1040 +1 14876032 rs4385705 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:630:123,133:45,41:1082 +1 14876379 rs4074529 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:136,130:170,149:883 +1 14876580 rs4074528 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:142,122:169,138:703 +1 14876595 rs4074527 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:148,123:173,141:757 +1 14877673 rs10803287 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,246:58,58:385 +1 14878377 rs12038432 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:14878377_C_T:591:0,271:83,320:498 +1 14878386 rs12031233 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:14878377_C_T:606:0,276:84,328:511 +1 14878714 rs12738424 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:537:1,236:70,302:378 +1 14879491 rs11803051 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:120,126:143,141:562 +1 14879811 rs61771941 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:662:153,150:180,177:652 +1 14879863 rs11586235 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:655:0,280:119,391:414 +1 14879936 rs34592996 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:134,152:179,185:1184 +1 14880016 rs4661290 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:143,131:178,162:755 +1 14880034 rs4233529 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:145,126:200,164:1110 +1 14880099 rs57160576 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:595:114,143:54,22:520 +1 14880180 rs28496747 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:585:136,130:30,32:850 +1 14880221 rs4233530 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:569:121,123:37,50:898 +1 14880825 rs10927462 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:133,114:156,163:812 +1 14880926 rs12041203 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:115,125:164,166:957 +1 14881158 rs67776503 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:595:135,141:161,158:1121 +1 14883072 rs4233531 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:720:0,315:102,414:399 +1 14883674 rs58088467 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:632:157,141:30,23:723 +1 14883844 rs17403250 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:127,136:143,150:698 +1 14884125 rs35792350 GGTGTGT G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:281:2,128:2,128:198 +1 14884410 rs35731376 C CTAA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:460:105,97:25,25:580 +1 14885654 rs72646001 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:495:94,113:143,142:1054 +1 14886100 rs869839 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:629:139,131:182,169:1330 +1 14887405 rs10927464 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:118,114:152,147:1405 +1 14888753 rs4661291 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:693:170,151:192,178:1069 +1 14889437 rs10927465 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:655:153,145:187,176:1171 +1 14890016 rs35069713 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:124,129:153,168:1160 +1 14890046 rs12034577 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:106,133:151,152:1010 +1 14890459 rs12081101 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:385:49,66:35,37:910 +1 14891212 rs10737898 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:561:0,246:41,287:301 +1 14891512 rs5772589 G GA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:110,155:24,24:531 +1 14891848 rs10754861 C A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:705:0,311:100,100:499 +1 14891887 rs34915516 C CAT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:671:153,149:35,37:988 +1 14891976 rs4661503 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:694:177,158:188,171:761 +1 14892499 rs4306122 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:733:0,339:86,404:493 +1 14892653 rs7549956 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:809:0,379:89,442:470 +1 14896165 rs12759227 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:584:0,258:83,326:472 +1 14897443 rs6693569 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:570:143,115:167,147:1259 +1 14900419 rs6703840 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:156,136:175,158:986 +1 14900708 rs6658018 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:14900708_T_C:586:151,128:165,136:666 +1 14900716 rs6658024 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:14900708_T_C:576:142,127:165,139:686 +1 14900931 rs61771942 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:14900931_G_A:532:124,112:152,140:965 +1 14900941 rs6429668 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:14900931_G_A:524:0,235:72,291:630 +1 14901093 rs12084536 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:103,117:138,151:844 +1 14901191 rs10927468 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:520:116,119:143,138:727 +1 14901229 rs61585602 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:489:114,112:136,123:702 +1 14902278 rs6429669 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:599:0,274:94,336:529 +1 14902320 rs12118610 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:126,136:161,179:1100 +1 14902827 rs10754862 T C 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:475:122,123:0,0:297 +1 14904352 rs4661506 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:791:174,169:228,220:1348 +1 14904554 rs4661507 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:688:0,323:79,376:483 +1 14904908 rs5772590 GA G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:661:156,148:44,32:870 +1 14905465 rs61771944 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:697:156,159:190,196:1044 +1 14905571 rs1105058 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:617:0,286:68,336:426 +1 14905843 rs1317249 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:651:0,299:59,351:360 +1 14906971 . CAAAT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:340:0,88,99:0,0,0:259 +1 14906971 . CAAATAAATAAAT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:340:0,88,99:0,0,0:259 +1 14907086 rs620532 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:14907086_A_G:600:0,296:0,273:314 +1 14907115 rs61771945 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:14907086_A_G:555:133,133:133,133:451 +1 14907214 rs619719 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:111,122:137,133:716 +1 14907764 rs590487 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:130,128:176,171:1604 +1 14908464 rs684975 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:529:0,236:69,291:424 +1 14908650 rs80215484 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:659:145,126:61,58:1358 +1 14910083 rs34982023 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:126,129:166,167:1164 +1 14910920 rs6685406 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:480:117,105:142,121:791 +1 14911145 rs55669007 C CT 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:468:116,126:106,99:336 +1 14911233 rs2473625 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:495:107,102:143,129:735 +1 14911901 rs520064 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:492:108,115:125,141:846 +1 14913199 rs79919239 GTT G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:103,116:57,32:832 +1 14913928 rs1295788 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:522:147,138:92,86:1170 +1 14913943 rs59612903 GA G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:416:115,96:68,66:322 +1 14915147 rs4661292 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:629:144,126:191,165:1056 +1 14915476 rs10733136 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:613:148,129:179,161:1050 +1 14915802 rs17361593 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:589:129,108:46,58:1193 +1 14916080 rs686570 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:128,108:179,145:1231 +1 14917667 rs75552123 GC G 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:460:91,109:21,27:371 +1 14917817 rs12145446 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:466:81,109:123,150:1072 +1 14917903 rs12116479 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:478:130,136:0,0:862 +1 14917914 . A AACACAC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:325:0,74,87:0,0,0:243 +1 14917914 . AAC A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:325:0,74,87:0,0,0:243 +1 14918815 rs2486775 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:505:123,106:143,128:727 +1 14919641 rs12022765 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:14919641_G_A:712:152,173:189,198:1157 +1 14919660 rs486958 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:14919641_G_A:714:0,315:119,404:539 +1 14919895 rs664747 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:653:143,153:172,184:1100 +1 14920514 rs692999 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:129,116:158,146:1260 +1 14920943 rs2486778 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:139,132:164,165:1073 +1 14921877 rs72647625 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:512:113,103:156,137:1152 +1 14921911 rs61771949 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:482:110,102:143,124:581 +1 14922804 rs61241872 GCACA G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:454:124,100:124,100:198 +1 14923463 rs12118856 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:660:134,162:161,199:1122 +1 14925031 rs1298341 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:504:0,239:0,239:254 +1 14925105 rs1295787 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:122,129:138,161:456 +1 14927324 rs2235728 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:666:157,146:183,185:1044 +1 14927445 rs6676514 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:131,151:169,187:953 +1 14927788 rs10399938 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14927788_G_A:729:166,165:198,199:1195 +1 14927796 rs6687972 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:14927788_G_A:748:169,171:202,200:1192 +1 14928686 rs9429237 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:672:0,307:82,376:445 +1 14929423 rs1344418 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:664:135,168:168,192:1053 +1 14929802 rs12096315 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:625:147,154:158,173:894 +1 14929892 rs5772591 C CCTGGTAGG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:537:101,131:31,51:1091 +1 14929915 rs1737860 T A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:118,148:37,36:976 +1 14929938 rs1737859 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:135,153:44,31:990 +1 14931348 rs60804745 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:124,125:150,162:715 +1 14932473 rs6429670 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:593:127,130:173,166:913 +1 14932496 rs2473628 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:629:146,129:179,175:1336 +1 14932613 rs2473627 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:147,141:170,169:1063 +1 14932790 rs566329 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:152,127:170,166:1166 +1 14932915 rs671337 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:538:126,117:149,149:1005 +1 14933205 rs4661293 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:617:138,137:170,172:1451 +1 14933417 rs4661508 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:710:166,143:211,188:1333 +1 14933554 rs10754863 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:776:153,198:198,223:1097 +1 14933820 rs10754864 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:720:181,145:221,171:917 +1 14934220 rs10803289 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:662:144,149:187,187:1146 +1 14934288 rs2473626 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:136,148:171,197:1104 +1 14934649 rs1997785 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:656:152,145:191,166:995 +1 14935195 rs6696546 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:125,126:166,180:951 +1 14935304 rs517267 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:680:151,165:186,180:917 +1 14935326 rs640109 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:746:167,176:203,211:1322 +1 14936283 rs6676539 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:150,137:175,171:1166 +1 14936688 rs142049418 CTGTT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:487:104,147:0,0:259 +1 14937813 rs1769844 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:754:163,166:215,211:1487 +1 14938157 . C G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:509:145,63:47,21:492 +1 14949884 rs4661294 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:684:166,161:182,179:1097 +1 14951843 rs7519289 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:627:155,128:184,152:787 +1 14953535 rs10803291 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:456:0,191:79,261:421 +1 14954188 rs72647636 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:499:117,119:132,131:948 +1 14959412 rs148884958 CTTTA C 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:113,104:53,49:397 +1 14960378 rs61774066 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:522:125,89:0,0:250 +1 14960380 rs10927474 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:517:109,96:0,0:250 +1 14961083 rs16850635 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:656:145,165:160,185:954 +1 14963676 rs72647637 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:575:127,136:151,159:840 +1 14966380 rs2294886 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:494:115,103:143,131:655 +1 14966422 rs2294885 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:524:119,112:155,135:838 +1 14975587 rs72647639 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:628:148,130:183,161:1046 +1 14976126 rs12401417 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:156,149:177,184:842 +1 14980132 rs61774068 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:734:168,166:216,190:1010 +1 14981065 rs7530335 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:125,119:147,136:840 +1 14981240 rs7530538 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:118,119:164,174:1306 +1 14981414 rs7530665 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:640:146,124:191,177:1343 +1 14981858 rs4661509 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:129,149:151,175:543 +1 14981920 rs761191 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:645:136,156:170,186:1123 +1 14982825 rs10927483 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:542:124,111:161,143:945 +1 14985358 rs7512426 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:590:144,136:152,153:770 +1 14985595 rs6429672 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:516:105,122:133,154:832 +1 14994621 rs10927493 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:675:161,156:193,168:954 +1 14995255 rs10927494 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:141,127:167,170:842 +1 14996872 rs139040112 GCTT G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:453:104,87:43,40:1326 +1 14997933 rs3820066 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:123,127:160,168:1055 +1 15001573 rs56230441 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:140,120:166,171:1034 +1 15001731 rs10803296 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,259:68,321:391 +1 15005976 rs12028734 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:499:111,93:156,140:1191 +1 15006086 rs4306123 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:637:147,131:181,178:1346 +1 15007633 rs9787225 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:479:100,94:144,136:1015 +1 15008258 rs10927499 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:311:36,74:0,0:322 +1 15008594 rs10803299 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15008594_G_A:635:139,158:164,162:627 +1 15008599 rs10803300 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15008594_G_A:645:139,163:165,168:645 +1 15009117 rs12038997 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:817:183,185:223,218:1250 +1 15009820 rs1883661 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:709:196,137:219,162:1169 +1 15009937 rs2871581 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:144,124:184,153:795 +1 15010006 rs10218760 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:145,159:155,172:766 +1 15010447 rs4661513 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:640:121,155:168,193:988 +1 15010593 rs718996 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:670:164,141:191,171:959 +1 15010607 rs718995 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:670:158,136:202,179:1105 +1 15011554 rs10927500 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:671:155,156:180,178:1004 +1 15011576 rs10803301 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:661:154,152:166,190:856 +1 15011753 rs7538750 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:650:129,154:180,188:1018 +1 15012364 rs1076713 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:134,137:170,151:652 +1 15014106 rs10737900 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:107,132:142,161:1112 +1 15017015 rs10927504 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:139,148:168,164:757 +1 15017081 rs33945952 A AAG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:133,131:33,36:920 +1 15018076 rs10927505 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:123,136:159,162:711 +1 15018660 rs3737686 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:611:152,125:176,159:1159 +1 15020031 rs12140803 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:584:135,127:171,152:892 +1 15020944 rs11806982 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:769:157,180:200,234:1396 +1 15023026 rs7516395 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:604:122,143:162,177:1184 +1 15023541 rs11584846 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:469:102,107:126,122:621 +1 15024105 rs7553105 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15024105_C_T:662:170,145:179,165:838 +1 15024110 rs7522235 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15024105_C_T:676:172,146:183,171:809 +1 15025094 rs10927507 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:511:107,120:139,150:1083 +1 15025223 rs10927508 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:143,140:155,166:852 +1 15025974 rs6429673 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:665:0,318:64,352:425 +1 15026236 rs4661298 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:118,135:160,173:1185 +1 15027773 rs10803302 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:138,119:177,156:900 +1 15028346 rs6689804 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:133,122:164,154:1115 +1 15029260 rs4661299 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:501:106,107:149,141:1112 +1 15029487 rs2310751 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:736:154,173:58,58:1481 +1 15030149 rs1997764 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:128,137:161,160:657 +1 15031150 rs6699867 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:467:87,115:117,148:752 +1 15031423 rs6691693 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:119,126:153,150:954 +1 15031898 rs10927510 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:119,127:164,154:1068 +1 15032340 rs7534010 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:125,125:148,155:996 +1 15033508 rs4661514 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:713:169,161:188,191:883 +1 15034505 rs33952668 ATT A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:653:134,148:52,44:1300 +1 15036694 rs10803304 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:509:112,110:146,145:1130 +1 15037952 rs12143402 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:507:103,123:133,143:932 +1 15038771 rs4661300 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15038771_T_G:512:116,114:141,143:1067 +1 15038791 rs4661515 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15038771_T_G:488:102,114:130,141:932 +1 15039673 rs12136961 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:506:102,107:142,149:886 +1 15039740 rs34094025 CT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:478:104,99:34,34:767 +1 15040231 rs1137795 A G 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:282:66,72:0,0:739 +1 15040367 rs10927512 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:471:85,103:32,31:823 +1 15040426 rs10803305 C T 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:143,146:112,105:772 +1 15041242 rs1000348 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:700:133,131:185,195:1240 +1 15041367 rs7545696 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:554:106,114:106,114:372 +1 15042419 rs11576896 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:636:146,148:179,164:849 +1 15042444 rs10927515 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:624:137,151:159,181:1095 +1 15042747 rs6663124 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:690:147,169:184,196:1282 +1 15042875 rs6704445 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:638:146,139:175,186:1025 +1 15043017 rs1569635 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:641:127,159:159,197:1029 +1 15044234 rs10927516 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:128,138:151,171:691 +1 15044543 rs7515321 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,245:69,306:410 +1 15045765 rs6688730 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:625:136,138:178,175:1067 +1 15046161 rs6657904 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,239:92,331:330 +1 15046245 rs7521493 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:658:147,139:183,175:873 +1 15046460 rs61215230 ATGGAG A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:138,129:40,20:677 +1 15046970 rs10803306 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:558:1,259:56,302:345 +1 15047171 rs10754867 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:599:1,267:71,324:379 +1 15047686 rs10803307 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:495:119,94:157,128:797 +1 15047978 rs10927517 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:153,133:162,144:1002 +1 15048049 rs12140709 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:118,117:141,152:926 +1 15048286 rs12118752 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:686:149,155:193,183:845 +1 15048871 rs12045403 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:811:206,187:219,200:1006 +1 15049045 rs2092395 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:779:0,371:75,430:447 +1 15049895 rs926520 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:526:102,122:138,162:1124 +1 15049922 rs926519 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:494:0,212:75,281:349 +1 15049990 rs926518 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,231:76,296:432 +1 15050524 rs4661517 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:140,124:197,174:1395 +1 15051408 rs12121855 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:603:137,140:151,176:733 +1 15051754 rs72636626 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:682:163,158:188,177:1081 +1 15051956 rs34698081 CT C 50 PASS platforms=2;platformnames=Illumina,Solid;datasets=2;datasetnames=HiSeqPE300x,SolidSE75bp;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,10,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:432:1,214:1,210:111 +1 15052887 rs10927520 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:499:111,112:135,142:510 +1 15053041 rs10927521 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:607:0,276:73,336:424 +1 15053459 rs6672597 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:129,145:141,163:716 +1 15053887 rs10927522 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:266:51,47:11,14:421 +1 15054252 rs72636627 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:330:54,82:77,102:682 +1 15054286 rs11800608 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:343:52,82:91,108:969 +1 15054394 rs11809023 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:335:67,74:101,85:620 +1 15054452 rs28882121 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:350:61,76:93,116:1071 +1 15054471 rs28856876 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:355:64,80:33,34:881 +1 15054507 rs12738632 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:350:67,69:38,31:827 +1 15054524 rs12141612 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:337:70,66:29,26:754 +1 15056175 rs2050126 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:117,129:155,155:912 +1 15056292 rs2050125 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:675:158,139:195,180:923 +1 15056639 rs10927523 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:116,131:147,161:754 +1 15056763 rs10737901 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:512:88,101:141,139:931 +1 15057369 rs17376468 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:140,114:172,152:1129 +1 15057674 rs137925681 TGAAAA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:166,148:35,26:632 +1 15057902 rs7532249 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:113,117:137,142:721 +1 15058013 rs7532344 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:623:0,290:63,338:291 +1 15060353 rs10803309 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:626:145,141:171,170:788 +1 15060893 rs12119049 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15060893_G_A:535:110,104:137,129:825 +1 15060902 rs10927524 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15060893_G_A:548:112,108:140,135:924 +1 15061856 rs2050124 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:123,131:164,159:498 +1 15062752 . T G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/0:.:160:0,0,0:0,0,0:145 +1 15062752 . TGTGTGT G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:160:0,0,0:0,0,0:145 +1 15077934 rs72636633 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:749:206,163:205,177:861 +1 15078316 rs4661522 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:674:152,167:173,181:713 +1 15082063 rs12086692 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:585:122,141:155,167:843 +1 15082319 rs58313877 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:122,143:171,189:1196 +1 15084910 rs10754868 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:115,131:143,156:656 +1 15086767 rs1003530 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:122,127:151,151:934 +1 15087570 rs59377970 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:494:108,111:142,129:447 +1 15089014 rs7535493 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:118,114:161,156:966 +1 15089055 rs12128426 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:101,121:160,168:1001 +1 15089101 rs148285755 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:120,98:156,144:814 +1 15089357 rs149085367 CAAT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:135,147:10,10:362 +1 15089945 rs72636646 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15089945_C_A:535:130,96:168,133:1210 +1 15089952 rs35437590 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15089945_C_A:541:127,107:165,139:1096 +1 15090012 rs10927540 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:546:133,105:157,133:897 +1 15090339 rs10927541 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:135,108:160,137:688 +1 15090462 rs10927542 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:107,127:153,170:1049 +1 15090709 rs10927544 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:121,119:160,150:945 +1 15091948 rs10754869 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,262:58,309:384 +1 15092741 rs12079599 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:517:1,224:74,293:401 +1 15092813 rs4661302 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:541:0,228:100,325:471 +1 15093221 rs10803316 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:500:0,222:72,288:405 +1 15093411 rs72636651 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:676:155,141:206,178:1347 +1 15093471 rs732470 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:595:116,142:155,184:939 +1 15093562 rs732469 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,271:88,345:386 +1 15094230 rs72636652 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:618:143,130:181,172:919 +1 15095773 rs10803317 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:125,136:161,177:1131 +1 15095996 rs10754870 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:506:90,106:150,150:995 +1 15096222 rs12141316 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:120,138:164,180:1474 +1 15096263 rs12141342 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:117,139:167,180:1374 +1 15096607 rs57875364 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:471:94,98:94,98:478 +1 15096783 rs56111696 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:659:172,129:199,160:1318 +1 15097427 rs12077960 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:640:150,130:189,167:1301 +1 15098043 rs12133138 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:666:159,137:188,184:869 +1 15098365 rs2038116 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:727:166,161:208,186:842 +1 15099490 rs72636653 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:455:97,97:138,127:1197 +1 15099694 rs60295036 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:521:89,104:83,98:1572 +1 15099722 rs4661524 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:459:0,200:0,184:379 +1 15100887 rs72636654 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15100887_C_T:515:93,112:134,138:966 +1 15100893 rs72636655 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15100887_C_T:509:90,113:128,136:888 +1 15100939 rs4661526 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:481:113,280:0,153:312 +1 15100964 . ATTT A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:273:42,61:42,61:198 +1 15100995 rs112310514 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:484:126,136:70,93:1054 +1 15101290 rs111908390 A ATT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:127,115:36,32:546 +1 15101472 rs4661303 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:95,138:149,169:1125 +1 15101600 rs4661527 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15101600_T_G:610:122,139:166,192:1459 +1 15101602 rs4661528 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15101600_T_G:610:123,138:167,191:1459 +1 15102393 rs4661529 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,277:68,331:385 +1 15103263 rs10927546 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:508:0,217:91,298:453 +1 15103799 rs10927547 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:577:0,260:67,318:392 +1 15103953 rs57289276 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:552:0,269:50,292:399 +1 15104018 rs1473682 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,232:73,300:389 +1 15104889 rs34655175 GA G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xGATK;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:197:3,191:3,191:99 +1 15104904 rs4661530 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:329:8,252:0,231:836 +1 15105314 rs72636659 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:637:0,279:84,360:429 +1 15107254 rs72636662 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:697:0,346:57,361:451 +1 15108583 rs72636664 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:624:2,282:76,343:450 +1 15108686 rs56100892 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:571:0,248:64,300:408 +1 15108936 rs804124 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:438:0,194:42,236:309 +1 15109289 rs72636667 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:485:0,226:55,262:407 +1 15109573 rs72636669 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:631:1,275:110,367:536 +1 15111927 rs804125 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:623:2,265:105,355:515 +1 15112142 rs804126 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:633:0,279:98,366:495 +1 15112844 rs72636671 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:625:151,142:177,158:730 +1 15113132 rs804127 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:707:0,313:95,397:492 +1 15113700 rs3765398 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:694:165,150:203,181:1065 +1 15113799 rs1721832 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15113799_C_T:736:153,168:202,222:1497 +1 15113804 rs3765396 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15113799_C_T:723:153,163:194,222:1385 +1 15113807 rs1737361 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15113799_C_T:713:152,165:187,220:1223 +1 15113844 rs1737360 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:742:166,180:191,205:1238 +1 15113921 rs1737359 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:737:160,166:198,213:1266 +1 15114296 rs1630120 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:114,130:143,157:832 +1 15114367 rs72636679 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:123,114:162,157:1260 +1 15115510 rs1721831 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,252:101,323:566 +1 15115704 rs3765391 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:520:119,111:151,136:834 +1 15115776 rs1737358 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:515:114,105:149,134:1098 +1 15115848 rs1737357 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:486:110,90:148,130:1174 +1 15115875 rs1721830 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:117,104:154,141:1309 +1 15116033 rs1737356 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:109,125:148,158:1150 +1 15116555 rs111347115 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:15116555_A_G:667:151,145:151,145:589 +1 15116576 rs7536655 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15116555_A_G:684:153,149:188,170:659 +1 15116658 rs1737355 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:658:0,283:110,390:424 +1 15117060 rs1721829 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:679:0,308:75,379:404 +1 15117334 rs1737354 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:695:133,149:129,146:1564 +1 15118081 rs1721828 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:454:104,107:125,119:753 +1 15118169 rs1737353 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:477:0,223:62,266:426 +1 15118240 . A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:518:0,111,119:28,140,119:721 +1 15118240 . A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:518:0,111,119:28,140,119:721 +1 15118652 rs2744867 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:633:137,140:126,133:697 +1 15119168 rs72636686 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15119168_G_C:524:118,117:106,111:984 +1 15119170 rs2744866 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:15119168_G_C:525:0,236:0,217:942 +1 15119187 rs72636687 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15119168_G_C:527:115,118:108,115:955 +1 15119413 rs2744865 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:465:0,182:61,243:359 +1 15119589 rs6669661 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:482:109,100:99,94:467 +1 15119639 rs6684855 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:454:113,101:103,97:541 +1 15119708 rs6693267 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15119708_G_A:455:98,98:137,120:626 +1 15119720 rs6682312 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15119708_G_A:445:100,95:130,118:601 +1 15119885 rs6695860 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:142,118:166,140:807 +1 15120027 rs72636689 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:118,138:173,160:965 +1 15120105 rs139508489 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15120105_A_AT:633:129,142:54,36:823 +1 15120133 rs2011956 C A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15120105_A_AT:644:149,141:44,46:1066 +1 15120526 rs1737352 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:646:139,137:185,185:920 +1 15120552 rs6429678 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:692:147,153:203,186:1080 +1 15121523 rs1737351 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:125,112:172,155:1241 +1 15123189 rs1737350 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:527:1,245:65,283:434 +1 15123809 rs10927551 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:512:121,107:148,126:624 +1 15124318 rs1737349 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:115,114:165,160:1316 +1 15124681 rs1626210 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:522:111,128:125,151:824 +1 15124792 rs6700404 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15124792_C_A:645:130,158:170,184:814 +1 15124801 rs2803392 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15124792_C_A:643:128,152:168,182:887 +1 15125006 rs112335389 CTCCACTT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:276:0,114:16,16:289 +1 15125220 rs6667250 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:567:104,121:140,161:844 +1 15125539 rs804131 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:617:142,142:164,161:583 +1 15125699 rs804130 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:642:146,155:174,166:907 +1 15126214 rs3930209 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:672:144,155:189,184:1225 +1 15127153 rs7530849 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:539:116,121:148,148:744 +1 15127451 rs9804039 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:15127451_T_C:491:106,87:101,85:1470 +1 15127453 rs9803848 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:15127451_T_C:486:101,87:96,85:1470 +1 15127544 rs34894690 C CA 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:324:76,77:66,72:244 +1 15127627 rs12568933 G T 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=5;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:379:109,93:78,76:477 +1 15127743 rs12563293 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:518:111,114:137,151:927 +1 15128469 rs11802293 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:110,112:145,141:681 +1 15128795 rs75754728 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:487:99,119:121,135:578 +1 15128900 . C CA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:308:4,43,81:4,43,81:99 +1 15128900 . CAAA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:308:4,43,81:4,43,81:99 +1 15129580 rs10737903 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:725:175,152:206,192:1305 +1 15129671 rs10927552 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15129671_G_A:660:169,156:20,23:679 +1 15129677 rs34945029 T TC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15129671_G_A:617:157,150:16,24:596 +1 15130227 rs6671788 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:119,125:149,161:716 +1 15130870 rs804135 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:118,112:158,146:928 +1 15130884 rs10927553 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:489:98,119:116,153:606 +1 15130912 rs6674887 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:106,123:154,174:1389 +1 15131029 rs6698574 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:638:149,129:42,57:1087 +1 15131285 rs35507012 C CAT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:496:113,109:32,35:986 +1 15132258 . AAATAAT A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/0:.:130:0,0,0:0,0,0:160 +1 15132272 . ATAATAATAATAATAA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:130:0,0,0:0,0,0:160 +1 15132321 rs10803319 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15132287_A_C:657:197,178:0,0:1031 +1 15132751 rs57639107 TA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:121,135:31,31:931 +1 15132811 rs10927554 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:148,140:172,168:901 +1 15133554 rs12096972 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:115,136:137,168:750 +1 15133668 rs804136 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:537:0,247:63,296:419 +1 15134870 rs12058489 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:368:73,53:24,26:668 +1 15135046 rs10927555 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:414:96,79:118,100:513 +1 15135253 rs10927556 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:714:171,152:205,183:1198 +1 15135528 rs6671110 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:672:171,174:163,163:1008 +1 15136206 rs3933177 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:519:114,119:147,138:818 +1 15136490 rs3916543 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:635:136,139:180,180:1471 +1 15136508 rs3916544 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:643:145,136:182,182:1440 +1 15137748 rs112499487 GT G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:672:159,140:48,55:1507 +1 15137762 rs804137 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:674:154,150:54,46:1572 +1 15138001 rs6704465 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:831:190,199:227,214:1183 +1 15138060 rs6681120 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:749:152,167:219,207:859 +1 15138309 rs6693738 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:655:149,145:181,176:1051 +1 15138738 rs3845590 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:125,135:155,151:778 +1 15140362 rs10489353 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:728:160,165:52,49:1322 +1 15140424 rs10733137 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:124,137:161,150:549 +1 15140808 rs6703773 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:678:161,133:212,163:631 +1 15140847 rs6691090 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:621:157,135:179,153:747 +1 15141987 rs6694657 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:660:155,138:189,172:963 +1 15142300 rs6658818 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:125,131:182,172:1097 +1 15142363 rs10927557 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15142363_G_T:622:132,132:178,188:1378 +1 15142364 rs57358700 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15142363_G_T:621:131,132:177,188:1378 +1 15143342 rs3845591 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:720:172,170:185,192:867 +1 15144274 rs36003629 GA G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:472:125,124:93,101:427 +1 15144305 rs10489354 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:588:121,119:170,158:1221 +1 15144445 rs34753595 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:127,126:155,146:926 +1 15144939 rs59888398 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:461:100,114:26,12:358 +1 15144983 rs2311336 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:510:108,122:32,35:951 +1 15145166 rs3888127 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:583:144,116:172,147:965 +1 15145597 rs16850900 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:662:143,144:48,43:1023 +1 15145919 rs804139 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:583:0,269:71,319:385 +1 15145945 rs7412472 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:555:143,104:168,135:936 +1 15146080 rs2871739 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:661:160,127:34,37:900 +1 15147083 rs3795756 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:135,126:154,148:843 +1 15147316 rs3820612 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:455:113,102:124,118:706 +1 15147480 rs11802831 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:518:141,104:155,118:748 +1 15147722 rs11580323 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:617:139,134:164,169:1277 +1 15147956 rs72638322 T C 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:132,154:101,128:667 +1 15148172 rs2311337 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:499:112,114:130,139:782 +1 15148849 rs113215943 G GAGGGAGAAAGT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:522:0,228:86,86:450 +1 15149171 rs6675636 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:542:120,113:165,144:876 +1 15150609 . CA C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:316:8,65,62:0,50,62:290 +1 15150609 . CAA C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:316:8,65,62:0,50,62:290 +1 15150652 rs6679764 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:529:102,93:140,146:1124 +1 15150914 rs804134 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:624:156,129:185,155:1128 +1 15153656 rs705579 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:657:0,305:75,361:447 +1 15153888 rs12123637 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:141,140:181,172:1160 +1 15154006 rs12691550 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:15154006_T_G:617:120,134:50,58:1346 +1 15154013 rs705578 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:15154006_T_G:622:122,133:48,66:1281 +1 15154443 rs804133 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:672:154,135:74,39:1228 +1 15160465 . T TCA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:285:2,58,78:2,58,78:198 +1 15160465 . TCACA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:285:2,58,78:2,58,78:198 +1 15166084 rs72638326 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:696:145,172:169,210:1344 +1 15169335 rs804132 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:711:0,321:95,404:483 +1 15177193 rs804128 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,274:84,340:461 +1 15181029 rs705576 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:584:0,260:86,330:488 +1 15183655 rs35733125 CT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:588:129,118:53,32:706 +1 15183731 rs4661307 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:154,138:174,172:766 +1 15183841 rs4661531 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,258:87,345:337 +1 15183865 rs4661532 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:126,123:170,175:1096 +1 15184030 rs56861974 C CAAAT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:411:103,102:0,0:160 +1 15184139 rs12760105 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:151,119:185,145:747 +1 15184327 rs112745123 GATATAGTTC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:561:130,117:62,21:736 +1 15184811 rs7365283 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:431:90,75:27,31:759 +1 15185229 rs2103116 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:644:142,136:54,42:983 +1 15185885 rs3888033 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:131,128:145,163:612 +1 15186409 rs3845594 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:109,145:151,164:935 +1 15186675 rs6429679 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:616:125,133:125,133:535 +1 15186844 rs3845595 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:111,125:155,174:1072 +1 15186923 rs67469308 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:130,123:152,147:567 +1 15187450 rs6429680 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:641:156,143:184,157:771 +1 15187716 rs6429681 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15187716_G_A:602:115,139:159,199:1211 +1 15187719 rs6429682 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15187716_G_A:599:117,137:156,199:1129 +1 15187818 rs10754871 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:98,110:131,143:838 +1 15188019 rs10803320 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:712:156,156:200,200:1394 +1 15189088 rs4661533 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:575:146,121:167,137:868 +1 15189231 rs4661534 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:648:160,142:189,157:1082 +1 15189299 rs3845596 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:667:151,149:188,180:1291 +1 15189558 rs3835224 C CGCTTCT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:615:142,121:0,0:1051 +1 15189672 rs3845597 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:164,128:170,148:662 +1 15189815 rs3765384 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:577:0,255:73,319:370 +1 15189870 rs3765383 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:15189870_T_C:585:0,256:89,334:473 +1 15189877 rs3765382 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:15189870_T_C:608:0,268:101,356:493 +1 15190029 rs3765381 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:720:165,151:201,209:1343 +1 15190264 rs3765380 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:584:125,135:46,48:1217 +1 15190419 rs3765379 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:525:115,113:147,146:772 +1 15191252 rs12734818 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:490:112,104:148,129:644 +1 15192285 rs2462190 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:457:104,91:137,119:944 +1 15192494 rs2690015 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:427:0,191:64,237:402 +1 15192559 rs2803399 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:434:0,176:102,257:525 +1 15192621 rs2803398 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:455:0,200:70,70:461 +1 15192659 rs373657901 ACTCTCTTT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:444:97,100:39,22:741 +1 15192740 rs2807568 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:523:0,234:83,296:489 +1 15192798 rs2690016 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:538:1,242:78,293:410 +1 15192916 rs4661539 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:120,118:155,149:958 +1 15193232 rs2690017 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:649:125,396:0,268:399 +1 15193339 rs12410935 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:672:135,162:164,197:720 +1 15195444 rs2807552 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:639:111,376:0,255:554 +1 15195763 rs5772604 A AT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:132,125:31,48:878 +1 15196003 rs3845599 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:653:150,139:195,174:1208 +1 15196135 rs3845600 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:662:156,140:195,174:1081 +1 15196437 rs2690019 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:149,148:198,178:930 +1 15196673 rs4661308 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:122,134:144,164:879 +1 15197814 rs12564579 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:452:68,118:34,37:933 +1 15197833 rs34434912 GA G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:463:70,114:42,46:1180 +1 15197909 rs2803396 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:485:0,225:54,256:408 +1 15198145 . A AGTGTGT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:236:0,51,57:0,0,0:240 +1 15198145 . A AGTGTGTGTGT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:236:0,51,57:0,0,0:240 +1 15199048 rs12731581 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:733:168,172:204,197:898 +1 15200834 rs2690021 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:567:135,126:151,156:1169 +1 15201772 rs2254286 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:448:77,86:107,113:716 +1 15201872 rs60354112 A AG 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:479:116,265:0,0:541 +1 15202204 rs4661540 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:514:117,120:143,137:934 +1 15202729 rs2803394 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:646:155,132:179,177:998 +1 15204245 rs2807544 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:624:125,167:149,185:1143 +1 15204750 rs12748696 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:648:155,124:199,173:1476 +1 15205817 rs12562638 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:769:181,157:219,200:1239 +1 15206214 rs12123392 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:121,123:155,149:715 +1 15207011 rs11578834 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:149,136:195,161:933 +1 15207952 rs2690022 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:643:0,278:118,378:568 +1 15208212 rs2801178 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:684:160,165:34,34:1087 +1 15208225 rs12732106 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:670:177,146:25,37:823 +1 15208578 rs2801181 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:141,109:175,134:618 +1 15208882 rs2049374 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:642:151,141:38,43:1133 +1 15209016 rs72638342 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:631:133,148:174,177:1458 +1 15210141 rs7525175 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:446:114,86:146,99:839 +1 15210845 rs2807546 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:623:0,275:73,345:400 +1 15211527 rs2801184 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,271:62,318:411 +1 15211824 rs2690024 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:436:0,213:39,236:362 +1 15211853 rs2807547 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:454:0,226:37,237:373 +1 15212417 rs868047 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:548:1,243:81,304:472 +1 15212959 rs10927565 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:515:146,137:109,101:606 +1 15213436 rs2690025 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:652:0,306:48,349:339 +1 15214694 rs2803402 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,225:101,315:488 +1 15216022 rs55702198 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:641:157,134:177,173:1032 +1 15216378 rs10927567 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:734:174,155:201,204:1268 +1 15217005 . C CT 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:549:1,126,119:18,25,0:451 +1 15217005 . C CTT 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:549:1,126,119:18,25,0:451 +1 15217422 rs2690014 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:339:59,64:79,96:555 +1 15218331 rs1524160 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:637:0,288:79,359:406 +1 15218995 rs2801174 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:542:0,238:75,303:388 +1 15220661 rs2807550 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:388:0,169:61,216:407 +1 15224120 rs35986209 CA C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1/1:.:605:1,304:0,0:259 +1 15224744 rs2801175 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:602:0,264:88,345:422 +1 15225403 rs2807553 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:629:0,285:86,352:469 +1 15225565 rs2807554 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,271:88,345:478 +1 15226055 rs2807555 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,270:81,348:426 +1 15226066 rs2801176 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,264:88,347:456 +1 15227925 rs34321742 A AT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:554:0,242:81,81:473 +1 15229101 rs4661543 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:583:0,272:78,319:504 +1 15229420 rs55662418 A AG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:463:0,200:44,44:367 +1 15231026 rs2807556 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:476:0,217:44,261:316 +1 15231609 rs61773601 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:478:113,98:142,118:579 +1 15231673 rs61773602 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:502:119,119:118,117:365 +1 15231846 rs4661546 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:499:118,113:141,127:565 +1 15232209 rs2807557 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:449:0,207:0,207:234 +1 15232288 rs2807558 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:483:0,225:0,0:279 +1 15232341 . A AAATAAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:299:0,77,73:0,0,0:259 +1 15232341 . A AAATAATAAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:299:0,77,73:0,0,0:259 +1 15232604 rs12131173 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:509:0,252:0,252:198 +1 15233348 rs2807559 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:496:0,242:37,255:371 +1 15233572 rs2807560 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,263:49,312:218 +1 15233738 rs12741404 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:135,100:183,156:1015 +1 15233770 rs10927570 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:106,116:149,153:830 +1 15234175 rs10927571 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:113,113:168,154:1249 +1 15234322 rs12032910 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15234322_T_C:473:103,102:150,123:770 +1 15234332 rs2803403 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15234322_T_C:477:103,105:147,126:771 +1 15234557 rs10449293 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:588:126,108:183,158:1157 +1 15235474 rs2803386 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:585:47,315:1,269:334 +1 15235948 rs2690013 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:141,121:164,151:1206 +1 15236557 . T TAAATAATGAATG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:265:0,64,61:0,0,0:259 +1 15236557 . T TAATG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:265:0,64,61:0,0,0:259 +1 15236648 rs2803387 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,258:68,306:446 +1 15237018 rs2690012 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,275:64,332:383 +1 15237140 rs2690011 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:135,135:154,156:783 +1 15237862 rs2807563 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,247:78,313:377 +1 15238055 rs2690026 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:543:117,110:160,153:1112 +1 15239836 rs34410695 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:109,126:167,172:1285 +1 15240457 rs2807564 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,224:114,330:554 +1 15242402 rs7515789 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:115,108:141,136:979 +1 15243225 rs2803388 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:561:1,249:70,315:400 +1 15243408 rs57587914 C CA 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:437:102,125:86,101:344 +1 15243757 rs7547573 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:669:130,152:187,204:1192 +1 15244365 . C CCTTCCTTT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0|1:.:363:0,83,80:0,0,0:259 +1 15244365 . C CCTTT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1|0:.:363:0,83,80:0,0,0:259 +1 15244761 rs2489772 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:134,136:170,161:1026 +1 15246260 rs2690029 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:808:192,179:37,62:1167 +1 15246314 rs12135456 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:728:175,167:200,187:1034 +1 15246322 rs2807567 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:767:179,173:214,203:1341 +1 15246979 rs6692559 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:434:81,90:123,131:1019 +1 15247649 rs112162817 A AAC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:270:67,62:0,0:259 +1 15248187 rs2801183 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:567:107,344:0,235:429 +1 15248272 rs2690030 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:587:123,132:159,165:865 +1 15248521 rs12137572 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:132,120:172,173:919 +1 15249739 rs1404061 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:564:0,244:97,326:468 +1 15251317 rs115891132 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:552:147,136:143,125:269 +1 15251375 rs80291415 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:588:163,141:153,133:332 +1 15251688 rs12568670 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:664:158,148:183,177:959 +1 15252655 rs10927576 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:131,119:166,137:922 +1 15253557 rs10927577 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:525:113,99:163,142:1137 +1 15253590 rs10927578 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:574:120,113:174,163:1418 +1 15253670 rs10927579 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:126,140:169,170:1044 +1 15253724 rs10927580 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:618:120,152:162,190:1509 +1 15254485 rs6662873 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:499:117,101:150,125:908 +1 15254559 rs6429684 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15254559_A_G:517:119,97:170,122:684 +1 15254576 rs10803322 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15254559_A_G:587:143,106:186,142:1056 +1 15254685 rs6429686 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:440:88,58:34,34:881 +1 15254712 rs6429687 C G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:15254712_C_G:404:91,64:30,20:660 +1 15254719 rs6429688 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:15254712_C_G:402:87,67:22,26:769 +1 15254727 rs6429689 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:15254712_C_G:400:94,67:21,32:635 +1 15254860 rs6429690 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:15254860_T_G:440:103,84:17,19:512 +1 15254879 rs12138369 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:15254860_T_G:477:112,86:17,29:490 +1 15254939 rs7520718 A C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:574:127,117:28,26:632 +1 15255395 rs6429691 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:144,144:162,172:667 +1 15255747 rs6429692 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:748:209,218:154,174:1078 +1 15255870 rs7523861 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:722:161,168:200,192:786 +1 15256121 rs7512398 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:659:142,153:180,187:1025 +1 15256136 rs7512460 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:138,164:165,199:1006 +1 15256546 rs12044172 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15256546_T_C:609:127,139:163,174:1206 +1 15256555 rs12046711 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15256546_T_C:598:127,140:156,177:1100 +1 15256601 rs12025771 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15256601_C_G:510:110,118:135,147:829 +1 15256608 rs12046721 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15256601_C_G:523:109,115:143,150:998 +1 15256903 rs12141312 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:684:147,149:188,192:1252 +1 15257211 rs12141413 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:552:122,131:146,150:659 +1 15257426 rs12568821 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:388:78,81:34,36:788 +1 15257475 rs12567946 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:430:65,75:54,54:1413 +1 15257539 rs6429693 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:486:0,193:64,245:382 +1 15257662 rs12567964 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:494:97,113:37,38:920 +1 15257707 rs12563189 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:509:105,108:34,39:742 +1 15257896 rs12569039 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15257896_G_A:630:139,141:37,29:982 +1 15257916 rs6429694 T G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:15257896_G_A:630:135,141:0,0:801 +1 15257955 . G AA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:228:0,0:0,0:160 +1 15258399 rs10927581 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:15258399_C_T:586:114,122:114,122:1613 +1 15258403 rs10927582 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:15258399_C_T:564:112,119:112,119:1496 +1 15258425 rs10927583 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:533:107,120:107,120:835 +1 15258938 rs12142668 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:653:140,148:171,192:818 +1 15259397 rs12569359 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:650:144,151:181,171:875 +1 15259476 rs12563724 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:617:131,143:38,48:1003 +1 15260444 rs7525568 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:391:78,90:78,90:268 +1 15260630 rs7525691 C T 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:611:147,120:26,17:459 +1 15260953 rs7542297 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:493:120,107:143,126:604 +1 15293313 rs4661552 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,223:94,317:471 +1 15298570 rs55976914 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:499:104,117:129,146:972 +1 15301165 rs4661309 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:626:0,287:69,341:437 +1 15310908 rs1937133 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:664:0,275:124,395:475 +1 15313292 rs72639813 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:568:128,131:162,146:733 +1 15317803 rs12732929 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:448:85,78:29,28:816 +1 15317833 rs140095366 A AAG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:439:88,77:23,26:671 +1 15318772 rs72639815 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:133,127:167,157:1005 +1 15322606 rs72639816 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:498:109,122:128,143:746 +1 15322963 rs72639818 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:525:109,119:153,143:502 +1 15333451 rs141925680 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:407:83,82:24,24:583 +1 15333748 rs6429700 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:575:135,133:32,23:772 +1 15335859 rs6429701 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,245:90,333:457 +1 15336522 rs938249 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:732:0,343:75,395:466 +1 15338235 rs72639822 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:664:163,136:182,189:842 +1 15338405 rs72639823 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:502:119,103:149,130:608 +1 15339088 rs61772178 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:123,131:153,161:1022 +1 15339092 rs938250 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,256:69,311:859 +1 15339149 rs114291230 T G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:118,138:43,31:799 +1 15339388 rs938251 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:657:0,277:110,384:488 +1 15339627 rs7548096 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:15339627_A_G:553:0,260:42,294:340 +1 15339637 rs7536670 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15339627_A_G:579:137,131:158,141:535 +1 15339902 rs6429702 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,237:0,228:379 +1 15339960 rs6429703 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,255:83,330:340 +1 15339976 rs6429704 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:553:0,254:51,305:215 +1 15340261 rs7550877 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:478:140,133:81,79:918 +1 15340867 rs6663935 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:659:0,304:78,367:424 +1 15341055 rs4661561 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,281:63,338:353 +1 15341251 rs4661562 A G 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:548:0,285:0,266:254 +1 15341413 rs4661563 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:585:145,140:153,146:417 +1 15341731 rs10927628 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:141,126:159,139:403 +1 15342359 rs10754877 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:532:0,244:57,296:375 +1 15342468 rs10927629 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:546:113,129:142,160:1051 +1 15342571 rs10803339 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:574:2,261:66,316:394 +1 15343374 rs6693220 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:686:0,313:81,378:428 +1 15344293 rs201096730 T TC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:537:102,126:0,0:835 +1 15344403 rs869712 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:121,122:154,158:785 +1 15344936 rs938252 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:550:0,238:83,312:444 +1 15346041 rs79975272 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:538:111,100:172,161:1407 +1 15346123 rs2089999 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,230:61,291:373 +1 15346909 rs12025960 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:639:148,152:165,175:911 +1 15347344 rs12028628 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:127,135:182,176:1126 +1 15347363 rs10927632 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:135,122:161,157:882 +1 15347385 rs12025325 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:124,125:165,167:1116 +1 15347640 rs6667220 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:504:112,101:156,139:1038 +1 15347654 rs10927633 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:494:116,95:154,124:928 +1 15347711 rs6658629 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:573:118,131:152,166:1005 +1 15348422 rs6659166 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:637:0,293:75,355:357 +1 15348453 rs12729478 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:647:147,147:175,179:1075 +1 15349751 rs72639838 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:589:123,143:148,173:990 +1 15350063 rs55995678 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:458:0,189:85,268:415 +1 15352303 rs12129176 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:142,128:175,167:1088 +1 15354321 rs150573943 G GTTGT 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:428:104,105:0,0:219 +1 15354997 rs12081961 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:641:133,133:181,189:1138 +1 15356792 rs144620819 C G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15356792_C_G:586:138,137:159,167:459 +1 15356793 rs145580533 T A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15356792_C_G:585:137,137:158,167:459 +1 15356794 rs148481455 C G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15356792_C_G:586:141,134:162,164:459 +1 15357505 rs2175771 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:156,117:188,145:853 +1 15358005 rs72639841 C T 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:135,167:0,0:864 +1 15358049 rs139569205 G GTGTGTTGTGTTGTGT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:279:76,68:0,0:252 +1 15358307 rs28464648 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:542:124,103:170,141:948 +1 15358345 rs13374758 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:544:141,114:160,128:632 +1 15358372 rs13374759 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:591:152,117:180,140:833 +1 15358616 rs4661311 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:448:85,81:119,106:638 +1 15358846 rs4661312 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:349:78,57:34,22:671 +1 15359323 rs2096387 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:490:51,266:0,215:311 +1 15359579 rs2311858 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:781:174,170:216,216:1438 +1 15359622 rs2311859 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:670:154,149:178,182:906 +1 15359967 rs4520412 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:694:171,147:202,176:939 +1 15360456 rs12128665 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:553:123,114:123,114:504 +1 15360721 rs938255 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:734:169,149:223,191:1243 +1 15360808 rs12129618 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:610:125,133:174,175:980 +1 15367433 rs2473739 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:175,156:129,121:885 +1 15371724 rs578771 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:128,139:174,165:1067 +1 15371973 rs523807 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:643:130,144:176,190:1152 +1 15372793 rs55932579 C CAAAAAAA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:356:0,128:0,0:281 +1 15373038 rs10754879 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,234:75,295:442 +1 15373378 rs10927657 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:630:129,125:62,63:1386 +1 15373880 rs10927658 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:107,124:148,158:973 +1 15375046 rs72639851 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:537:99,97:0,0:588 +1 15376520 . AGTAGG A 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:275:65,76:0,0:280 +1 15376655 . G GGAATAGAATA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:269:65,64:0,0:160 +1 15381607 rs5772616 C CA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,240:112,112:556 +1 15382141 rs72639855 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:150,127:192,157:1033 +1 15385462 rs68100905 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:120,141:149,186:724 +1 15386628 rs2073091 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:386:82,70:105,92:532 +1 15387443 rs2839856 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:124,125:170,156:1133 +1 15388197 rs41269409 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:692:152,142:217,183:941 +1 15388673 rs3795757 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:624:152,129:189,157:912 +1 15389861 rs2076567 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:15389861_A_G:397:93,77:93,77:475 +1 15389862 rs2076566 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:15389861_A_G:396:92,77:92,77:475 +1 15390145 rs2076565 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15390145_A_G:516:121,93:161,140:886 +1 15390178 rs2076564 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15390145_A_G:496:154,138:114,91:986 +1 15391156 rs10927663 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:109,122:147,150:662 +1 15391328 rs12216995 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:115,122:144,149:906 +1 15395836 rs9943190 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:646:133,146:177,189:1300 +1 15395881 rs9943244 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:585:116,140:151,177:845 +1 15396100 rs9943059 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:633:134,142:174,177:743 +1 15397077 rs10927666 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:612:134,123:170,173:845 +1 15397811 rs4661571 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:637:148,139:169,166:508 +1 15398240 rs16851219 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:708:153,153:190,200:1077 +1 15400054 rs4661317 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:472:105,118:117,131:352 +1 15402156 rs4661572 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:572:122,133:152,160:707 +1 15402720 rs10927667 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15402720_T_G:540:127,103:173,135:918 +1 15402724 rs12028975 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15402720_T_G:543:130,104:177,134:870 +1 15402919 rs12024334 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:141,118:164,135:776 +1 15402995 rs12022003 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:666:149,138:195,178:1117 +1 15403036 rs10927668 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:655:141,156:174,183:888 +1 15403284 rs742661 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:649:158,139:190,166:694 +1 15403344 rs4661573 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15403344_C_T:639:153,130:186,177:1083 +1 15403350 rs742660 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15403344_C_T:628:147,129:183,168:1141 +1 15403657 rs79608421 AT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:640:136,139:45,39:770 +1 15404145 rs4661574 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:125,125:157,157:880 +1 15404690 rs2137643 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:141,111:192,146:866 +1 15404794 rs7512350 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15404794_G_A:598:138,123:170,160:836 +1 15404816 rs7512364 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15404794_G_A:537:128,110:150,148:725 +1 15404831 rs72639888 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15404794_G_A:576:125,115:164,165:1034 +1 15405489 rs1000313 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:711:163,151:198,194:1281 +1 15405907 rs1000314 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:649:134,146:134,146:801 +1 15406661 rs2175775 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:621:154,129:178,159:758 +1 15406696 rs2175774 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:700:158,148:207,183:989 +1 15406912 rs2137642 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:525:128,120:141,136:404 +1 15406935 rs2137641 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:567:128,142:148,158:420 +1 15407260 rs16851263 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:638:138,147:33,32:832 +1 15407611 rs61772223 A T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:445:66,90:47,36:976 +1 15408057 rs139092577 C CGT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:403:99,93:0,0:294 +1 15409156 rs4501834 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:142,127:181,178:1253 +1 15409427 rs12037863 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:134,116:165,153:1114 +1 15410423 rs6665995 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:127,146:160,174:982 +1 15410692 rs6668887 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:539:121,123:152,141:807 +1 15410999 rs6429709 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:699:196,199:148,157:1083 +1 15411564 rs6656957 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15411564_C_A:763:188,168:225,189:854 +1 15411574 rs6680739 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15411564_C_A:746:188,157:233,174:746 +1 15411661 rs6669698 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15411661_A_G:761:180,166:214,185:1064 +1 15411670 rs6669703 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15411661_A_G:755:184,162:214,182:1108 +1 15412269 rs10803349 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:764:192,153:242,172:815 +1 15412415 rs10927670 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:717:174,146:224,174:925 +1 15412713 rs10803350 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15412713_T_C:654:149,144:178,187:885 +1 15412714 rs10803351 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15412713_T_C:650:147,142:176,185:885 +1 15412921 rs10927672 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:801:163,197:210,229:841 +1 15413355 rs2221926 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:737:158,180:193,204:1108 +1 15413690 rs2203264 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:802:196,188:214,200:967 +1 15413826 rs10927673 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:792:186,167:223,193:769 +1 15413835 rs77464357 CT C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:739:168,158:207,186:498 +1 15414413 rs4661575 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:673:147,156:39,41:1054 +1 15414912 rs55662174 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:583:131,124:166,161:952 +1 15415084 rs7522074 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:137,114:176,147:962 +1 15417246 rs12564054 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:134,110:165,138:913 +1 15418073 rs12072230 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:135,139:158,158:570 +1 15418247 rs16851281 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:142,147:173,158:683 +1 15418476 rs78788352 AT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:119,127:31,18:428 +1 15421655 rs4661576 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:114,104:160,152:1037 +1 15421785 rs4661318 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:463:100,104:131,128:933 +1 15423477 rs61772225 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:15423477_C_A:534:1,242:64,297:633 +1 15423481 rs72640706 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15423477_C_A:530:108,131:143,160:666 +1 15424731 rs3752934 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:499:0,217:88,291:443 +1 15424984 rs1996128 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:15424984_T_C:538:0,244:67,302:381 +1 15424985 rs1996127 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:15424984_T_C:542:0,248:67,306:381 +1 15425650 rs11579544 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:15425650_A_G:485:0,218:62,267:522 +1 15425655 rs10803353 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15425650_A_G:488:109,111:126,140:720 +1 15426382 rs514969 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:516:118,111:145,137:1023 +1 15426471 rs514137 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:117,127:146,141:915 +1 15426594 rs513114 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:105,131:122,169:715 +1 15426780 rs534918 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:130,117:158,149:992 +1 15427117 rs532075 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:565:134,129:146,148:594 +1 15427660 . T TTCTCTCTCTCTC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:359:82,89:82,89:198 +1 15427783 rs72640711 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:514:121,105:141,153:1401 +1 15427982 rs502918 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:114,121:143,157:1221 +1 15428358 rs477953 T C 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:384:88,116:73,102:369 +1 15429233 rs491203 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:523:106,127:31,32:814 +1 15429548 rs149950149 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:139,126:168,162:809 +1 15429652 rs555481 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:114,135:144,167:703 +1 15430031 rs45547637 A T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:134,132:134,132:198 +1 15430895 rs6695209 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:707:162,156:188,204:1441 +1 15430933 rs523125 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:673:144,148:187,202:1431 +1 15431823 rs55935741 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:791:191,171:225,208:1249 +1 15432360 rs742659 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:712:146,165:200,198:997 +1 15432463 rs508873 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:758:155,181:202,222:1026 +1 15432541 rs12133901 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:639:150,137:174,174:545 +1 15432598 rs575898 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:655:135,125:135,125:1450 +1 15432864 rs7515649 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:683:166,142:49,53:1441 +1 15432960 rs572326 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:153,108:195,137:1006 +1 15433656 rs6429710 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:121,109:167,148:1195 +1 15433707 rs544599 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:542:122,121:156,149:978 +1 15434039 rs6679224 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:658:155,135:195,172:1009 +1 15434439 rs72640720 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:645:133,161:158,189:932 +1 15434863 rs500229 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:123,123:152,141:668 +1 15435180 rs496792 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:459:100,92:136,123:723 +1 15436031 rs1118189 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:748:173,174:201,199:1113 +1 15436107 rs137888635 ATG A 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:15436107_ATG_A:598:162,145:0,0:358 +1 15436128 rs1737979 T C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:15436107_ATG_A:628:154,156:0,0:259 +1 15436155 rs200823967 ATG A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:625:159,147:0,0:259 +1 15436265 rs149785707 GTC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:742:177,171:0,0:490 +1 15436297 rs116806282 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15436297_A_G:752:187,173:0,0:283 +1 15436299 . G GTA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15436297_A_G:754:185,175:0,0:283 +1 15436493 rs147738906 ATG A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:680:189,172:0,0:405 +1 15436537 rs138104181 GTA G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:619:156,151:0,0:149 +1 15436563 rs199977929 CTG C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:642:158,166:0,0:160 +1 15436887 rs146482306 T TTGTG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15436887_T_TTGTG:574:150,120:5,11:480 +1 15436916 rs200617340 CAT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:15436887_T_TTGTG:607:152,116:44,22:777 +1 15437950 rs4661319 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:102,105:163,157:1216 +1 15438646 rs66777636 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:136,137:164,161:744 +1 15438825 . ATGTGTG A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0|1:.:255:0,59,71:0,59,71:99 +1 15438825 . ATGTGTGTGTGTGTG A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1|0:.:255:0,59,71:0,59,71:99 +1 15439227 rs12046842 C A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15439227_C_A:514:116,99:38,47:887 +1 15439233 rs150305993 G GC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15439227_C_A:499:120,102:28,37:564 +1 15439413 rs4661577 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:124,119:148,145:769 +1 15439490 rs57315380 AC A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:150,116:42,34:924 +1 15440185 rs111375912 T TCTCA 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:129,145:0,0:524 +1 15440237 rs4661320 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:111,130:137,155:744 +1 15441275 rs1055412 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:574:124,128:154,165:1021 +1 15441494 rs705581 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:112,120:156,163:1005 +1 15441926 rs910105 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:126,108:165,160:1067 +1 15442028 rs7513431 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:638:138,124:196,178:1476 +1 15443368 rs1476356 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:126,142:165,171:906 +1 15443426 rs72640734 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:601:122,147:155,177:866 +1 15443631 rs72640735 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:115,118:150,164:1207 +1 15443770 rs10754880 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:538:130,123:150,141:848 +1 15443859 rs2235786 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:151,124:174,141:732 +1 15444288 rs2235784 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:136,130:149,144:652 +1 15444487 rs2235783 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:617:129,159:24,29:727 +1 15444563 rs2235782 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:593:172,173:123,120:1009 +1 15444643 rs2235781 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:137,110:168,128:798 +1 15444772 rs12744957 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:101,121:121,160:787 +1 15444832 rs10927679 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:502:93,116:127,154:818 +1 15444894 rs41269423 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:15444894_A_G:558:114,131:143,169:1080 +1 15444899 rs72640739 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:15444894_A_G:545:109,127:138,164:1040 +1 15445060 rs10927680 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:114,119:146,149:882 +1 15445186 rs10927681 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:479:99,94:150,133:1019 +1 15445656 rs1546908 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15445656_T_C:422:78,99:109,143:950 +1 15445658 rs1546907 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15445656_T_C:422:80,97:111,141:950 +1 15445973 rs1008845 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:477:104,97:123,125:454 +1 15446055 rs1569703 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:471:96,100:139,131:784 +1 15446168 rs13375820 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:130,131:152,161:924 +1 15447498 rs1546906 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:134,146:159,171:923 +1 15447594 rs11812087 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:781:163,191:212,221:1154 +1 15448327 rs735894 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:486:100,87:154,141:1143 +1 15448714 rs733678 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:531:114,124:147,148:877 +1 15448760 rs733677 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:132,129:165,165:1129 +1 15449413 rs737530 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:614:128,144:48,30:840 +1 15449934 rs10927682 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:141,130:171,158:778 +1 15450394 rs116737155 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:628:139,126:179,172:986 +1 15450551 rs1005447 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:122,118:178,167:1030 +1 15450903 rs41269427 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:556:101,105:156,157:1188 +1 15450949 rs41269431 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:502:89,91:142,119:657 +1 15451351 rs72640748 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:119,106:159,141:779 +1 15451829 rs67712958 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:115,119:153,164:1325 +1 15453933 rs6662650 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:650:164,139:181,162:616 +1 15456263 rs72640751 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:142,123:167,156:940 +1 15456820 rs12025185 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:693:159,162:180,195:1103 +1 15458402 rs4423000 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:126,128:141,138:519 +1 15459030 . TACAC T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:259:0,59,68:0,59,68:198 +1 15459030 . TACACACACACACACAC T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:259:0,59,68:0,59,68:198 +1 15459178 rs4661322 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:505:100,115:31,29:676 +1 15461365 rs6684648 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:537:120,118:146,148:615 +1 15462172 rs55935221 A C 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:661:187,177:0,0:876 +1 15462356 rs2143580 C G 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:593:162,168:0,0:698 +1 15462387 rs2143579 G A 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:553:146,156:0,0:583 +1 15462987 rs59426348 GCA G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:134,124:50,33:826 +1 15463772 rs10803360 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:693:164,164:186,173:897 +1 15464309 rs111545323 CA C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:463:115,115:101,106:226 +1 15464461 rs72640756 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:116,133:149,160:711 +1 15465487 rs4661579 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:652:137,148:193,171:1098 +1 15466721 rs2223694 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:646:128,169:36,26:658 +1 15467263 rs6429711 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:129,139:168,186:1182 +1 15468778 rs72640763 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:736:162,165:204,203:1294 +1 15469441 rs72640764 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:15469441_A_G:575:172,143:0,0:286 +1 15469455 rs10737906 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:15469441_A_G:618:183,168:0,0:818 +1 15469461 rs9659096 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:15469441_A_G:624:189,168:0,0:625 +1 15469482 . G A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:218:0,0:0,0:160 +1 15469483 . AGAGAATATG A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:218:0,0:0,0:160 +1 15469612 rs7535492 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:665:131,166:46,41:1121 +1 15469675 rs7535575 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:128,160:169,189:1020 +1 15470096 rs7514867 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:118,130:154,163:837 +1 15470473 rs72640766 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:816:195,178:180,160:738 +1 15471173 rs10754883 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:589:133,130:170,151:777 +1 15471375 rs72640767 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:730:161,155:210,203:1261 +1 15471494 rs72640769 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:645:185,190:124,151:859 +1 15471635 rs72640770 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:618:124,115:124,115:1330 +1 15471714 rs116188644 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:571:129,121:161,148:420 +1 15471731 rs941456 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:137,127:168,150:665 +1 15471788 rs941455 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:139,131:184,165:947 +1 15471820 rs72640772 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:133,138:176,171:1007 +1 15471923 rs72640773 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:132,154:157,180:898 +1 15472304 rs72640774 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:567:131,126:156,157:997 +1 15472370 rs2064366 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:146,135:173,158:936 +1 15472431 rs72640776 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:140,147:167,180:994 +1 15472519 rs72640778 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:681:155,137:57,49:1277 +1 15472558 rs72640780 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:635:150,128:48,42:1131 +1 15472617 rs72640781 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:541:121,114:150,151:699 +1 15472887 rs761300 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:114,119:157,150:811 +1 15473182 rs761299 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:670:168,146:190,166:837 +1 15474897 rs72640783 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:143,129:174,153:1060 +1 15474916 rs9659498 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:143,133:164,154:1040 +1 15475428 rs111383549 AAAAATTT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:496:113,108:40,25:623 +1 15475515 rs10754884 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:135,117:168,139:834 +1 15475627 rs61782687 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:624:196,169:125,123:1001 +1 15475675 rs61782688 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:626:140,151:163,173:1064 +1 15475809 rs137857658 AC A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:135,136:32,28:618 +1 15476444 rs61782689 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:684:144,152:199,195:1247 +1 15476587 rs61782690 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:714:176,137:168,131:1322 +1 15476605 rs61782691 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:750:174,145:166,141:1382 +1 15476758 rs61782692 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:676:149,144:195,185:1164 +1 15477263 rs61782693 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:122,123:161,164:1057 +1 15477364 rs61782694 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:617:136,138:169,171:1045 +1 15477794 rs61782695 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:697:145,166:192,198:1069 +1 15478017 rs1883760 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:128,128:167,166:907 +1 15478401 rs72640787 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:676:150,145:192,187:1150 +1 15480062 rs742674 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:552:130,118:146,138:434 +1 15480405 rs3737685 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:624:146,138:167,154:438 +1 15481130 rs72640788 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:468:94,87:59,35:950 +1 15481453 rs1006371 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:117,126:157,167:939 +1 15481822 rs6429712 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:109,118:160,183:1373 +1 15482054 rs4661581 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:122,107:167,146:1420 +1 15482235 rs6429713 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:484:110,88:158,119:816 +1 15482932 rs4661582 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:530:94,132:139,165:866 +1 15484645 rs113596222 TG T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:574:126,114:52,48:1367 +1 15485940 rs6429719 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:753:192,156:229,171:932 +1 15491445 rs148004682 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:617:135,139:170,167:707 +1 15493539 rs10927695 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:492:106,96:45,40:1090 +1 15494148 rs72640791 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:501:118,114:145,126:757 +1 15495905 rs7539166 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:731:200,224:145,163:1427 +1 15496842 rs111641789 G GT 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:409:96,117:0,0:285 +1 15497294 rs2872002 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:413:93,89:109,107:446 +1 15497727 rs6429722 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:500:108,119:130,145:973 +1 15497832 rs41307794 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:116,119:153,150:1270 +1 15497844 rs10429935 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:497:114,105:141,136:1119 +1 15497954 rs6689923 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:455:103,99:131,119:582 +1 15498348 rs6429723 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:139,110:151,126:571 +1 15498452 rs4436387 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:555:117,118:42,38:878 +1 15498725 rs72640793 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:582:184,172:106,113:1297 +1 15499234 rs72640794 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:116,137:168,175:1125 +1 15500172 rs76380797 TAA T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:520:131,129:119,122:202 +1 15501501 rs4661588 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:125,128:182,160:1048 +1 15501666 rs4661589 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:486:138,66:26,24:648 +1 15501917 rs6703631 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:696:143,149:138,146:797 +1 15502337 rs10754885 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:583:115,123:174,166:1037 +1 15502481 rs10754886 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15502481_C_T:670:145,159:179,193:1256 +1 15502502 rs80324675 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15502481_C_T:704:147,163:190,204:1360 +1 15502539 rs10754887 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:761:173,159:219,205:1427 +1 15503651 rs1883758 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:657:138,156:182,186:1185 +1 15504073 rs4661590 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:134,132:157,166:883 +1 15504785 rs761298 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:136,108:180,148:1125 +1 15506075 rs4661591 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:121,129:164,154:698 +1 15507669 rs72640798 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:717:160,171:197,195:1285 +1 15508657 rs145296367 CAAAT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:345:0,182:0,0:245 +1 15509852 rs10737907 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:160,145:192,175:805 +1 15509911 rs12045099 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:667:160,136:201,167:947 +1 15510389 rs910104 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:129,141:174,155:840 +1 15510442 rs1079317 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15510442_C_T:634:151,138:183,161:731 +1 15510459 rs72640801 C T 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15510442_C_T:618:170,159:148,141:518 +1 15510568 rs2092505 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:645:142,124:51,50:1145 +1 15510617 rs57737562 C CT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:596:134,135:19,29:567 +1 15510649 rs2312327 A C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:15510649_A_C:613:134,143:31,18:539 +1 15510658 rs2312328 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:15510649_A_C:582:131,136:30,25:688 +1 15510662 rs60999552 T TAGCTGGGACTA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:15510649_A_C:592:135,133:32,41:945 +1 15510811 rs2006023 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15510811_A_G:513:103,115:150,146:840 +1 15510813 rs2006022 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15510811_A_G:516:104,117:151,148:840 +1 15510937 rs761297 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:494:102,113:142,128:1014 +1 15511057 rs4067936 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:556:127,111:119,105:644 +1 15511354 rs56359774 GC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:141,107:34,18:514 +1 15511610 rs6679635 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:674:167,133:203,163:838 +1 15511758 rs10927705 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:716:0,317:103,407:517 +1 15512131 rs11589870 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:679:0,314:86,375:480 +1 15512178 rs11588245 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:644:0,296:77,357:463 +1 15512222 rs11588628 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:638:0,297:77,353:397 +1 15512340 rs4661596 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:671:0,308:86,375:488 +1 15512563 rs2312329 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:469:0,213:57,261:368 +1 15512757 rs761296 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:608:0,246:0,225:620 +1 15512875 rs761295 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:429:0,205:46,228:395 +1 15512968 rs761294 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:458:1,190:87,266:408 +1 15512999 rs761293 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:486:0,212:80,271:438 +1 15513047 rs2312330 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:473:0,213:64,262:421 +1 15513210 rs761292 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:459:0,207:58,248:408 +1 15513311 rs5772621 G GC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:414:0,184:48,48:360 +1 15513355 rs761291 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:433:0,197:57,57:444 +1 15513491 rs761290 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:402:0,177:59,236:344 +1 15513636 rs74062371 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:342:0,126:0,126:267 +1 15513810 rs6693418 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:455:0,209:47,234:397 +1 15514084 rs11808042 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:517:0,228:82,297:447 +1 15514267 rs7412077 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:501:0,237:40,273:303 +1 15514661 rs72642308 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:149,153:172,180:589 +1 15514712 rs72642309 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:578:133,139:146,162:600 +1 15514846 rs72642311 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:132,121:168,152:757 +1 15514888 rs72642312 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:150,113:196,154:1041 +1 15515049 rs72642314 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:682:147,157:179,201:1153 +1 15515068 rs4540653 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:708:0,322:99,401:475 +1 15515095 rs72642315 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:703:161,158:199,189:957 +1 15515597 rs10927707 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:579:0,241:0,238:823 +1 15515598 rs11588775 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:575:105,132:105,132:814 +1 15515634 rs6429724 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:511:0,209:0,0:324 +1 15515780 rs6675205 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:356:61,81:79,102:461 +1 15515829 rs12568115 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15515829_G_C:455:108,74:146,104:897 +1 15515831 rs7552637 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15515829_G_C:457:109,75:147,105:897 +1 15516069 rs6429725 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:487:0,227:61,251:467 +1 15516279 rs10927708 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:541:0,236:82,311:452 +1 15516299 rs10927709 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:537:0,244:68,299:439 +1 15516716 rs6670174 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:608:0,279:89,344:491 +1 15516752 rs6670249 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:617:0,298:61,336:423 +1 15517352 rs2092504 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:142,110:177,139:678 +1 15517441 rs2092503 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:510:0,218:84,302:405 +1 15517657 rs6673489 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:15517657_T_C:505:0,222:68,290:358 +1 15517661 rs2312331 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:15517657_T_C:511:0,223:73,296:364 +1 15517802 rs61399794 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:126,141:157,180:1121 +1 15517996 rs2872003 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:410:0,188:43,226:320 +1 15518369 rs55870442 CT C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:636:0,282:80,80:490 +1 15518433 rs10803364 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:691:155,148:199,185:1199 +1 15518469 rs10737908 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:611:0,283:63,339:326 +1 15518618 rs16851384 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:146,121:170,138:734 +1 15518696 rs56404681 G C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:603:118,155:47,42:1158 +1 15518745 rs138170119 T TAGCGTAAGTACACGGGTGG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:577:145,105:38,52:839 +1 15518792 rs16851387 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:666:177,123:50,33:997 +1 15519103 rs1810509 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:436:0,177:63,240:355 +1 15519183 rs138662903 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:465:105,97:123,121:537 +1 15519417 rs742671 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:651:0,277:105,361:552 +1 15519583 rs742670 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:583:5,258:60,313:294 +1 15519682 rs742668 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:583:0,261:76,332:411 +1 15520071 . C CTTTTT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:242:0,13,88:0,13,88:198 +1 15520071 . CTTTTT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:242:0,13,88:0,13,88:198 +1 15520138 rs1892200 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:450:0,175:35,210:293 +1 15520272 rs1892201 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:464:78,125:100,159:582 +1 15520583 rs6692220 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:670:0,310:61,357:356 +1 15521119 rs6671540 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:654:0,290:99,99:514 +1 15521721 rs10927714 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:110,117:156,162:981 +1 15521883 rs72642320 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:682:151,143:202,182:1136 +1 15522111 rs61482262 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:495:122,104:136,130:617 +1 15522298 rs1883757 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:547:0,257:51,303:335 +1 15522587 rs1883756 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:571:0,258:86,330:459 +1 15522809 rs10927715 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:542:0,239:84,306:842 +1 15522817 rs6690852 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:565:131,111:171,147:1197 +1 15522838 rs10927716 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,262:100,343:535 +1 15522890 rs57848538 ATG A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:482:0,231:0,0:278 +1 15523309 rs10754888 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:620:0,279:92,355:499 +1 15523746 rs67023840 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:147,119:169,161:714 +1 15524168 rs5772626 CTT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:110,119:44,40:985 +1 15524270 rs2024547 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:468:0,205:77,267:433 +1 15524381 rs2024546 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:420:65,85:105,102:769 +1 15524708 rs4661597 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:464:0,209:64,266:334 +1 15524849 rs4661598 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:652:0,300:76,355:447 +1 15525229 rs7528237 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:531:0,234:74,299:400 +1 15525410 rs2179650 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:605:0,270:72,334:402 +1 15526007 rs7523443 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:565:129,110:53,40:1057 +1 15527323 rs4661326 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:685:0,305:86,380:433 +1 15528334 rs4369223 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:143,145:171,176:911 +1 15528487 rs2050233 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,265:81,336:435 +1 15528985 rs55675605 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:122,109:159,137:700 +1 15529061 rs7533065 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:467:118,93:132,124:716 +1 15529107 rs7533078 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:447:1,205:75,245:467 +1 15529536 rs4661599 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:139,126:162,156:871 +1 15529939 rs4661600 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:628:185,162:133,118:1013 +1 15530260 rs7536482 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:600:0,269:96,339:523 +1 15531318 rs138839038 TG T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:134,105:23,20:625 +1 15531447 rs17386788 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:482:120,92:154,119:778 +1 15531843 rs2312333 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:125,113:164,143:1037 +1 15532130 rs10927720 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:118,136:130,178:887 +1 15533050 rs7514839 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:124,109:161,140:777 +1 15533105 rs4661603 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:598:142,137:161,163:1012 +1 15534303 rs17405193 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:687:156,143:136,125:1605 +1 15536489 rs4077309 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:15536489_T_G:610:141,120:39,54:1273 +1 15536491 rs4077310 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:15536489_T_G:609:138,122:39,54:1273 +1 15536623 rs12058415 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:153,136:207,179:1066 +1 15537122 rs12070469 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:640:143,132:193,170:1160 +1 15537638 rs4661604 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:795:184,175:219,216:1068 +1 15537704 rs4661606 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:728:165,153:209,199:1242 +1 15537858 rs4661607 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15537858_T_C:792:183,179:214,213:972 +1 15537881 rs4661608 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15537858_T_C:817:193,188:210,221:841 +1 15538296 rs113229076 A AC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:657:93,174:0,0:873 +1 15538470 rs1892198 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:15538470_C_T:804:0,366:99,447:400 +1 15538493 rs12057629 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15538470_C_T:748:155,190:192,216:827 +1 15538515 rs10927722 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15538470_C_T:758:165,180:204,216:1058 +1 15538534 rs10927723 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15538470_C_T:745:168,166:200,208:1135 +1 15538752 rs10927725 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:723:165,166:197,198:1205 +1 15538853 rs10927726 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:670:150,153:184,183:996 +1 15538977 rs58228587 GCGTCCCA G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:129,123:43,25:783 +1 15539259 rs12025158 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:696:160,164:177,191:749 +1 15539483 rs1316533 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:686:156,154:194,182:950 +1 15539665 rs56089140 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:145,156:157,155:703 +1 15539693 rs1316279 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:678:170,154:180,174:1033 +1 15539998 rs1316276 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:712:0,337:61,376:420 +1 15540165 rs1892197 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:687:136,169:184,199:1104 +1 15540260 rs55809473 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:144,138:185,173:788 +1 15540312 rs6658612 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:649:136,140:178,182:988 +1 15540454 rs6684016 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:510:83,101:24,38:620 +1 15540627 rs6429727 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:534:108,109:41,39:908 +1 15540685 rs6429728 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:506:117,108:144,132:854 +1 15540734 rs6429729 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:481:110,108:130,127:773 +1 15541073 rs7551863 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:556:0,262:64,311:406 +1 15541407 rs3753316 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:121,137:145,154:618 +1 15541537 rs3753314 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:696:0,277:77,352:411 +1 15542097 rs3820063 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:794:201,160:234,194:1240 +1 15543354 rs17405463 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:800:185,177:234,209:1222 +1 15543682 rs2312334 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:736:95,429:0,323:496 +1 15543893 rs72642345 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:811:193,155:254,199:1319 +1 15544239 rs4297286 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:630:0,282:92,361:430 +1 15544623 rs2312335 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:729:0,322:118,418:582 +1 15546077 rs3753313 G A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:771:144,125:193,173:1464 +1 15546761 rs7681 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:522:110,134:130,143:551 +1 15546825 rs549 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:510:152,132:106,89:1039 +1 15546872 . CA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:292:0,62,50:0,62,50:99 +1 15546872 . CAAA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:292:0,62,50:0,62,50:99 +1 15548425 rs6656990 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:495:0,228:85,277:502 +1 15548636 rs10737909 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:588:142,112:186,155:1283 +1 15548673 rs4661327 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:589:0,260:100,337:431 +1 15549917 rs147184944 TGA T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:141,118:31,26:807 +1 15550525 rs10803369 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:106,127:148,160:1002 +1 15553170 rs2312336 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:647:138,153:179,180:961 +1 15553764 rs6692531 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:625:148,129:186,156:1132 +1 15554007 rs1751997 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:688:151,146:199,183:923 +1 15554229 rs1780588 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:749:178,164:220,180:876 +1 15556884 rs1752029 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:796:172,173:224,224:1398 +1 15557409 rs1780611 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:621:0,273:89,362:402 +1 15557767 rs59126146 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:652:153,142:171,186:753 +1 15557909 rs12125735 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:15557891_A_C:609:125,134:47,44:1116 +1 15558008 rs2489665 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:668:0,313:39,352:293 +1 15558387 rs57765166 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:137,136:187,173:862 +1 15558413 rs60415503 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:132,136:178,163:687 +1 15558550 rs12040922 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:554:141,120:141,120:267 +1 15558598 rs2265735 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:516:0,229:0,229:358 +1 15558705 rs6673448 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:140,104:179,137:865 +1 15558789 rs60776158 C CA 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:130,130:34,25:286 +1 15558885 rs6429731 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:719:160,171:187,200:922 +1 15558938 rs6429732 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15558938_T_C:679:158,152:194,172:780 +1 15558957 rs6429733 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15558938_T_C:636:142,143:189,161:704 +1 15559142 rs6429734 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:648:149,154:181,164:683 +1 15559461 rs7530955 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:15559461_A_C:733:167,168:152,154:1215 +1 15559482 rs7519224 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:15559461_A_C:783:179,182:160,164:807 +1 15559758 rs1780589 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:712:0,329:74,383:397 +1 15559788 rs1780590 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:672:143,154:178,188:1125 +1 15559937 rs12042667 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:585:112,129:158,152:613 +1 15560079 rs61780633 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:131,108:157,145:715 +1 15560294 rs6667531 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:647:145,168:170,187:958 +1 15560295 rs1780591 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:646:0,312:33,325:879 +1 15560369 rs6680182 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:630:135,151:135,151:420 +1 15560621 rs56246447 T TACAC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:161,128:23,10:442 +1 15560795 rs767254 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:680:147,154:51,53:1288 +1 15560900 rs767255 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:656:145,156:38,29:860 +1 15561053 rs767256 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:162,134:206,175:1199 +1 15561094 rs12033379 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:678:168,137:208,168:1175 +1 15561181 rs12034146 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:761:188,155:226,192:1264 +1 15561466 rs112741401 A AAAAC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:537:0,257:35,35:292 +1 15561801 rs10927742 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:663:142,160:180,180:777 +1 15561922 rs1752028 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:698:178,138:217,162:1166 +1 15562105 rs35893261 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:523:150,146:69,96:1217 +1 15562109 rs60360021 A ATTTT 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:433:128,55:78,44:217 +1 15562396 rs1780592 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:656:0,285:87,372:433 +1 15562593 rs1780593 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:148,143:167,168:899 +1 15562741 rs147656455 A AAGTCAACGTG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:497:121,101:25,31:740 +1 15562873 rs12033230 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:577:122,144:145,168:905 +1 15562922 rs12033237 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:596:131,142:154,167:986 +1 15563404 rs1752027 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:636:0,289:68,352:397 +1 15563728 rs1780594 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:143,132:177,176:1157 +1 15564890 rs1752026 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:620:148,130:173,164:836 +1 15564927 rs7535105 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:122,124:161,147:883 +1 15565849 rs4661611 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:576:122,129:167,149:535 +1 15566037 rs1752025 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,256:35,291:284 +1 15566103 rs4661612 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:647:206,181:145,118:1097 +1 15566266 rs4661613 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:156,126:177,137:770 +1 15566349 rs4661614 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:642:164,134:47,29:805 +1 15566514 rs10927743 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:155,148:187,159:617 +1 15566646 rs4285688 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:132,126:152,149:824 +1 15566699 rs10927744 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:634:160,142:182,151:639 +1 15566803 rs4644485 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:624:146,129:186,163:870 +1 15567085 rs6688294 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:382:81,54:114,75:532 +1 15567220 rs6673150 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:442:95,75:28,20:514 +1 15567447 rs6688667 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:307:72,84:0,0:716 +1 15567508 rs10803372 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:468:79,89:60,33:964 +1 15567583 rs6429735 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:587:136,137:124,132:439 +1 15567800 rs7549959 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:676:142,151:199,183:942 +1 15568051 rs4661328 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:112,134:136,154:579 +1 15568107 rs55957719 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:145,116:183,144:961 +1 15568174 rs61608453 C CA 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:147,148:0,0:629 +1 15568727 rs61066316 TAAA T 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:251:34,50:34,50:99 +1 15568984 rs4661615 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:693:149,156:196,197:1220 +1 15569421 rs10927746 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:715:156,137:215,203:1481 +1 15569521 rs16851463 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:664:152,146:180,178:991 +1 15570989 rs1752024 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:136,116:170,163:1341 +1 15571514 rs1752023 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:457:0,201:74,264:662 +1 15571526 rs1752022 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:452:104,91:133,123:1035 +1 15571613 rs1780595 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:498:101,115:132,145:989 +1 15572070 rs1752021 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:538:0,246:69,301:406 +1 15572133 rs1752020 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:526:0,228:87,305:469 +1 15572802 rs1612465 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:127,108:171,136:762 +1 15573259 rs1752019 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:509:0,241:58,281:399 +1 15573689 rs1780596 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:134,110:38,34:953 +1 15573699 rs142342714 A AC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:531:97,126:35,30:835 +1 15573711 rs1752018 C A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:518:130,98:31,21:574 +1 15573758 rs1780597 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:500:119,98:139,127:456 +1 15573769 rs1752017 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15573769_G_A:487:113,106:129,129:509 +1 15573775 rs1780598 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15573769_G_A:494:116,107:129,128:417 +1 15573950 rs1780599 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:583:125,131:30,31:720 +1 15574076 rs1752016 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:503:109,94:39,42:922 +1 15574322 rs1752015 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:133,113:161,150:1001 +1 15574721 rs1780600 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:575:126,135:117,121:601 +1 15574893 rs35333314 C CT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:505:119,112:27,18:581 +1 15575001 rs1752014 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:117,124:152,163:1048 +1 15575075 rs1752013 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:532:140,166:67,117:1175 +1 15575230 rs1780601 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:122,130:170,166:873 +1 15575286 rs1780602 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:117,137:152,190:844 +1 15575352 rs1752012 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:110,144:145,166:620 +1 15575812 rs1752011 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15575786_TA_T:505:85,119:44,35:1054 +1 15576105 rs2489670 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:773:185,170:217,202:1216 +1 15576239 rs2479076 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15576239_C_T:559:123,127:161,156:914 +1 15576242 rs2489671 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15576239_C_T:545:121,126:151,151:999 +1 15576311 rs1752010 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:597:128,151:23,31:738 +1 15576361 rs1780603 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:654:142,165:37,33:983 +1 15576578 rs1752009 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:679:149,149:191,185:925 +1 15576622 rs1752008 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:745:216,218:154,157:1289 +1 15576666 rs1780604 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:726:158,175:206,194:742 +1 15576783 rs1752007 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15576783_T_C:744:148,188:181,226:1335 +1 15576788 rs1752006 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15576783_T_C:742:150,189:185,220:1182 +1 15577022 rs1752005 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:686:180,144:204,156:729 +1 15577120 rs1752004 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:723:162,150:227,191:1219 +1 15577278 rs1780605 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:147,142:187,165:593 +1 15577338 rs72642392 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:707:169,150:48,41:1151 +1 15577373 rs1780606 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:704:162,149:55,42:1110 +1 15577457 rs1780607 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15577457_G_C:732:179,148:223,183:1094 +1 15577480 rs1780608 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15577457_G_C:723:168,143:222,188:1329 +1 15577640 rs1752003 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:660:154,138:186,165:686 +1 15578031 rs377216636 TTTGA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:125,127:44,37:1112 +1 15578114 rs1780609 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15578114_C_T:653:158,142:184,169:1142 +1 15578122 rs1752001 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15578114_C_T:633:151,141:175,159:1032 +1 15578195 rs1622686 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:650:143,152:177,179:988 +1 15578816 rs1780610 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:132,146:161,183:773 +1 15578967 rs1616011 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15578967_A_G:649:137,155:176,180:819 +1 15578972 rs1615985 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15578967_A_G:663:139,156:184,188:924 +1 15579015 rs1615862 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:621:128,134:177,187:1366 +1 15579336 rs1752000 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:601:121,133:173,179:1036 +1 15579370 rs2479073 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:646:128,153:180,195:1206 +1 15579644 . C CTGTG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0|1:.:267:0,49,74:0,0,0:139 +1 15579644 . CTG C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1|0:.:267:0,49,74:0,0,0:139 +1 15579688 rs5772632 AAGAG A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:329:101,67:0,0:259 +1 15579747 rs867038 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:15579747_C_A:514:99,132:118,157:657 +1 15579779 rs1104686 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:15579747_C_A:553:111,129:149,162:1169 +1 15579802 rs1104688 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:15579747_C_A:570:118,143:144,165:1016 +1 15580057 rs10158292 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:638:154,134:180,179:1382 +1 15580300 rs10927749 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:774:165,192:203,215:872 +1 15580334 rs7529088 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:748:173,189:185,206:913 +1 15580767 rs7529562 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:792:197,180:217,197:977 +1 15580887 rs7531916 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:752:175,162:213,204:1140 +1 15581004 rs55822521 G GGGT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:757:174,183:33,46:1356 +1 15581056 rs7532089 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:661:149,144:193,174:866 +1 15581074 rs7524278 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:673:162,150:177,183:1013 +1 15581127 rs7532108 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:681:160,159:21,34:629 +1 15581324 rs1927190 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:754:158,167:215,212:1004 +1 15581406 rs1927189 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15581406_C_T:783:179,172:229,205:1090 +1 15581411 rs1927188 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15581406_C_T:774:183,162:232,195:1083 +1 15581533 rs1927187 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:780:190,160:230,195:1075 +1 15581616 rs148702392 T TAAAAAAAAAAA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:546:142,81:31,41:1036 +1 15581628 rs28590101 C A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:631:155,113:35,44:1001 +1 15582023 rs7535266 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:688:144,141:209,201:1304 +1 15582071 rs7513373 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:135,146:163,171:706 +1 15582469 rs59974790 CTGCCTTG C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:550:122,132:34,18:627 +1 15583269 rs12039500 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:119,132:147,161:899 +1 15583441 rs12040275 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:132,116:145,138:998 +1 15583611 rs17406208 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:668:122,166:178,207:1380 +1 15583819 rs16851480 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:669:149,149:183,194:1402 +1 15584079 rs943558 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:512:105,110:149,144:818 +1 15585248 rs34197883 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:469:96,77:36,47:877 +1 15585593 rs4661329 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:506:105,98:158,132:774 +1 15586278 rs6666201 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:106,133:143,170:985 +1 15586831 rs7531846 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:612:153,121:143,114:961 +1 15586878 rs7512217 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:644:135,112:135,112:1664 +1 15587095 rs4420077 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:119,116:165,141:708 +1 15588180 rs10927750 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:119,106:155,139:955 +1 15588386 rs7529980 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:505:119,111:135,135:667 +1 15589222 rs6676330 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:724:161,161:204,196:1276 +1 15590179 rs10927752 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:469:88,83:55,50:1130 +1 15591074 rs1927184 G A 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:664:160,168:157,162:272 +1 15591219 rs1927183 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:748:171,170:209,196:1016 +1 15591929 rs10927753 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:129,157:163,174:525 +1 15592636 rs10158712 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:710:160,158:193,195:745 +1 15593373 rs1927182 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:769:178,180:206,206:1014 +1 15593496 rs146295993 GTT G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:723:185,130:47,47:1235 +1 15593557 rs4661616 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:768:198,151:235,191:971 +1 15593666 rs4661617 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:853:187,187:239,232:1415 +1 15593966 rs10927754 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:737:181,186:194,189:671 +1 15594045 rs7517714 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:628:134,168:156,178:492 +1 15594348 . A T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:734:186,182:186,182:198 +1 15594441 rs60912081 TA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:691:164,182:0,0:259 +1 15595676 rs6679398 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:759:183,164:225,187:1009 +1 15596180 rs12404105 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:688:157,156:195,178:826 +1 15596286 rs56388951 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:792:178,167:235,203:1085 +1 15596509 rs12047902 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15596509_T_C:597:122,137:158,161:637 +1 15596529 rs12047158 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15596509_T_C:605:129,135:154,169:675 +1 15596640 rs12029600 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15596640_C_A:630:142,140:177,170:878 +1 15596645 rs144063685 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15596640_C_A:647:148,142:187,175:808 +1 15596646 rs12047216 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15596640_C_A:647:148,142:187,175:808 +1 15596699 rs12047218 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:609:123,144:44,23:550 +1 15597334 rs33970705 G GA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:482:104,111:23,25:676 +1 15597758 rs7549875 G A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:118,133:118,133:198 +1 15598116 rs147559865 C CGCATGGGAAATAACTAATT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:636:135,147:32,50:570 +1 15599160 rs6703580 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15599160_G_T:539:129,119:150,142:855 +1 15599164 rs6703582 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:15599160_G_T:542:133,117:158,136:873 +1 15599365 rs10803374 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:154,137:212,176:788 +1 15599982 rs34698619 C CT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:677:151,157:43,43:1124 +1 15600049 rs10927757 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:625:140,141:180,165:685 +1 15600085 rs10927758 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:669:158,151:171,196:746 +1 15600167 rs12060411 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:687:169,137:202,185:1252 +1 15600217 rs10803375 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:690:158,147:214,181:1283 +1 15600403 rs12059413 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:598:133,138:38,38:1041 +1 15600799 rs4661618 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:717:138,169:190,222:1392 +1 15601095 rs4661619 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:107,129:27,28:722 +1 15603430 rs60270382 TG T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:678:154,154:32,47:919 +1 15604560 rs55730182 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:618:141,138:171,171:1180 +1 15605902 rs10927763 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:134,126:154,146:737 +1 15605959 rs34676838 GC G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:510:130,97:23,24:661 +1 15606453 rs10927764 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:147,124:181,165:1105 +1 15607304 rs493970 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:620:143,130:182,169:1220 +1 15608753 rs471308 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:689:171,158:193,176:693 +1 15608797 rs576391 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:728:176,152:221,185:1112 +1 15608877 rs575530 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:810:192,162:245,217:1392 +1 15608888 rs575504 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15608888_C_T:800:198,166:240,198:996 +1 15608895 rs575487 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15608888_C_T:808:197,169:237,209:1141 +1 15609117 rs572953 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:757:174,178:198,202:887 +1 15610004 rs10927765 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:848:202,172:253,222:1500 +1 15610170 rs6674471 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:612:160,134:170,147:557 +1 15610266 rs527439 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:588:0,275:57,57:369 +1 15610609 rs1737344 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:497:1,232:65,272:438 +1 15610847 rs8179499 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:435:75,81:123,129:1106 +1 15611118 rs10803376 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:633:131,150:168,178:1006 +1 15611821 rs482926 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:617:0,281:61,342:350 +1 15612531 rs10927766 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:716:170,172:192,184:995 +1 15613319 rs537476 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:142,172:174,192:1014 +1 15613478 rs536364 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:654:0,289:98,367:512 +1 15613643 rs534653 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:1,269:115,362:568 +1 15613946 rs531901 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:494:95,115:138,148:806 +1 15616139 rs486557 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:811:145,134:175,181:748 +1 15616183 rs487338 T C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:822:153,151:179,170:829 +1 15617190 rs34777607 CT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:381:73,103:60,87:194 +1 15617330 rs559053 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:410:79,81:14,14:476 +1 15617736 rs545031 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15617736_T_C:556:123,114:156,144:951 +1 15617737 rs545032 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:15617736_T_C:557:124,114:157,144:951 +1 15619990 rs515511 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:634:158,123:27,38:717 +1 15620004 rs518943 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1|1:15620004_G_A:629:0,282:70,70:423 +1 15620016 rs515601 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1|1:15620004_G_A:604:0,270:63,63:291 +1 15620043 rs519060 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:589:1,242:109,350:322 +1 15620084 rs189659392 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:588:105,138:156,184:1124 +1 15620222 rs56352908 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:747:137,171:137,171:1391 +1 15620339 rs78672976 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:756:151,166:200,217:1463 +1 15621141 rs2148918 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:134,138:151,164:495 +1 15621708 rs7547507 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:674:141,162:172,191:1057 +1 15629040 rs7553651 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:115,116:156,165:946 +1 15630203 rs2104605 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:124,110:178,167:1198 +1 15634669 rs558251 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:679:0,307:92,367:525 +1 15635500 rs10489961 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:679:155,163:183,187:814 +1 15635521 rs2312535 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:705:153,159:197,200:1045 +1 15638004 rs11809847 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:664:155,145:189,173:1085 +1 15638526 rs10927769 G C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:582:133,136:26,32:891 +1 15642224 rs7533373 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:506:101,114:142,139:713 +1 15642460 rs484060 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:514:109,88:0,0:558 +1 15643218 rs477590 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:660:152,153:177,180:613 +1 15644729 rs7554324 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:721:176,147:166,138:1203 +1 15645551 rs7534349 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:126,155:136,179:376 +1 15647828 rs7518884 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:879:215,189:245,230:1238 +1 15647874 rs473111 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:845:203,184:233,229:1296 +1 15648532 rs578227 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:916:240,201:257,220:1005 +1 15649468 rs509161 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,198:112,112:503 +1 15649966 rs1534953 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:160,135:179,154:610 +1 15650561 rs56174148 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:626:143,143:173,168:1197 +1 15650784 rs3765354 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15650784_T_G:539:122,108:161,144:976 +1 15650791 rs3765355 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15650784_T_G:536:119,110:156,145:1005 +1 15651062 rs3765356 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:531:113,115:144,154:783 +1 15651419 rs10127455 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:135,126:165,152:864 +1 15651828 rs34214489 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:115,118:143,152:589 +1 15652106 rs12729507 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:496:110,112:145,126:574 +1 15653078 rs7532157 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:144,115:166,144:1158 +1 15653503 rs7532559 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:100,104:123,123:528 +1 15653563 rs3765357 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:110,111:140,135:900 +1 15653872 rs10127456 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:651:139,168:170,174:606 +1 15655944 rs56017972 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:751:129,141:164,178:915 +1 15657206 rs12401358 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:120,105:165,139:1173 +1 15658145 . AGGAAGGCAGGAG A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:217:58,48:0,0:240 +1 15658794 rs7537166 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:152,132:163,158:948 +1 15659126 rs12734769 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:656:148,147:176,174:784 +1 15660629 rs6665126 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:457:97,85:138,122:1030 +1 15660673 rs6702685 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:459:97,81:139,122:1229 +1 15661304 rs12726117 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:130,124:172,150:856 +1 15662606 rs7549599 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:647:158,142:168,180:1330 +1 15663431 rs7549759 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:512:118,108:40,37:950 +1 15668276 rs763821 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:823:155,157:166,172:821 +1 15668631 rs7528747 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:688:160,150:198,177:930 +1 15669233 rs2479083 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:642:153,130:189,161:736 +1 15676050 rs10927773 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,244:82,320:421 +1 15676503 rs12033496 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:594:0,264:89,335:481 +1 15677066 rs2479074 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,237:98,313:521 +1 15677161 rs2479072 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,259:60,313:368 +1 15677869 rs7535287 T A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:523:0,269:0,269:198 +1 15677932 rs7532826 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:654:0,300:58,354:355 +1 15677983 rs72643647 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:674:153,165:172,186:860 +1 15680451 rs2473358 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:501:0,240:49,268:389 +1 15681389 rs7545204 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:616:0,264:88,88:503 +1 15681440 rs34487716 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:575:0,252:68,68:450 +1 15681633 rs35557392 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:469:0,190:63,253:355 +1 15682374 rs34637530 CA C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:611:0,243:93,93:365 +1 15682402 rs33997410 TA T 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:608:0,236:0,0:262 +1 15682482 rs2473360 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:680:0,270:0,262:504 +1 15682515 rs12131993 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:667:0,295:70,350:424 +1 15683367 rs55899016 CA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:438:6,196:6,196:99 +1 15684995 rs481075 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:146,136:165,161:830 +1 15685362 rs484711 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:128,137:164,169:1198 +1 15685797 rs488595 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:514:103,118:145,142:608 +1 15686006 rs1751998 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:455:93,99:30,48:817 +1 15686432 rs515216 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:460:102,91:134,119:624 +1 15687059 rs4661330 A G 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:698:119,122:136,137:765 +1 15687814 rs542008 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:130,124:175,172:1006 +1 15688045 rs6695106 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:692:157,156:197,181:986 +1 15691540 rs10803382 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:523:136,107:153,126:788 +1 15692913 rs3765361 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:573:131,125:156,148:788 +1 15693556 rs2496346 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:111,124:141,176:1185 +1 15693674 rs2496347 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:460:98,94:130,132:1136 +1 15695611 rs12082286 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:689:169,159:182,175:953 +1 15697183 rs876295 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:118,112:153,143:985 +1 15697926 rs55841500 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:124,154:148,182:832 +1 15698284 rs2496348 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:110,121:134,137:719 +1 15698556 rs12562412 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:642:145,134:185,177:1360 +1 15699327 rs2249097 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:585:141,133:159,151:1121 +1 15700257 rs35634099 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:151,133:179,160:746 +1 15702297 rs2496342 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:501:137,104:142,118:612 +1 15702573 . ATTTT A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:442:0,85,106:0,0,0:236 +1 15702573 . ATTTTTTTATTTATTTT A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:442:0,85,106:0,0,0:236 +1 15703274 rs2496341 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:139,141:175,166:639 +1 15703788 rs2496340 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:134,138:178,170:770 +1 15704689 rs2092325 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:624:139,154:155,169:609 +1 15705072 rs736185 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:139,112:167,139:855 +1 15706071 rs3001999 T G 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:575:183,135:0,0:372 +1 15706529 rs12568778 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:675:146,149:187,191:1317 +1 15706708 rs2496339 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:139,133:184,145:689 +1 15707137 rs3737690 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:717:157,166:190,204:1162 +1 15707984 rs2473333 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:428:75,107:103,144:501 +1 15708238 rs3835221 AT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:469:85,107:47,35:933 +1 15708540 rs1010294 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:900:125,121:166,178:1483 +1 15709394 rs67367601 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:551:125,118:147,162:1085 +1 15709555 rs3820067 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:514:117,112:141,143:835 +1 15710113 rs3737691 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:129,130:160,162:1026 +1 15710411 rs2496338 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:149,150:159,173:567 +1 15710493 rs3831918 CAT C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:150,146:47,45:751 +1 15711126 rs2473335 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:671:174,138:201,159:507 +1 15711363 rs2496337 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:131,120:148,147:490 +1 15711487 rs2473336 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:564:134,116:51,28:842 +1 15712885 rs2249218 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:724:147,153:147,153:1405 +1 15713345 rs59453670 C CT 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:588:141,151:129,126:282 +1 15713740 rs6681278 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:757:171,167:213,205:1114 +1 15717838 rs2473338 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:624:185,161:145,132:717 +1 15718470 rs2496330 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:109,138:143,164:928 +1 15719028 rs12734304 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:454:111,113:111,113:198 +1 15719926 . G GCACACA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:293:77,61:0,0:259 +1 15720253 rs2496329 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:480:98,67:51,58:1236 +1 15720899 rs12562848 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:660:155,123:190,187:1323 +1 15721782 rs11584192 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:414:103,89:0,0:1008 +1 15722544 rs909831 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:150,152:180,182:876 +1 15723382 rs11589508 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:721:168,141:218,180:943 +1 15724003 rs2253371 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:669:156,144:199,173:1057 +1 15724033 rs2253372 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:698:168,146:202,183:1384 +1 15726116 rs1883426 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:700:166,138:209,180:1129 +1 15726566 rs742361 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:703:151,155:193,205:1330 +1 15727348 rs12561771 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:133,138:171,181:1141 +1 15728139 rs12562864 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:647:130,133:190,193:1390 +1 15728274 rs55703621 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:624:162,123:24,32:646 +1 15728289 rs2473344 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:675:178,132:26,37:863 +1 15730446 rs34301635 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:616:127,158:157,176:772 +1 15730693 rs12739601 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:650:163,141:180,160:904 +1 15730926 rs12743712 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:618:129,134:190,167:856 +1 15733376 rs2092323 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15733376_T_C:561:113,125:161,161:1347 +1 15733394 rs2092324 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:15733376_T_C:590:122,124:186,160:1333 +1 15733926 rs11577345 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:682:156,149:179,199:954 +1 15734301 rs12562216 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:696:143,146:132,141:1646 +1 15734352 rs12565080 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:619:142,125:0,0:1293 +1 15735229 rs71000399 AGCACCCTGGTTTTCGGCCCT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:549:137,117:69,28:782 +1 15736055 rs71631726 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:517:113,123:17,14:284 +1 15737820 rs72643657 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:120,112:149,145:718 +1 15738052 rs36077334 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:463:90,101:127,148:975 +1 15738570 rs760935 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:405:0,170:73,238:388 +1 15738616 rs35981164 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:419:73,97:118,125:922 +1 15739016 rs2496325 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:490:92,106:139,152:1083 +1 15739233 rs34920891 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:490:104,119:123,147:758 +1 15739263 rs6701494 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:110,125:149,162:1096 +1 15739350 rs742363 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:111,142:134,160:664 +1 15739697 rs760936 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:459:98,113:117,135:680 +1 15742689 rs2473351 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:492:118,100:150,128:867 +1 15742807 rs2496322 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:103,106:134,133:910 +1 15743118 rs55654432 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:506:104,116:137,145:868 +1 15743884 rs2496321 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:131,152:185,197:1318 +1 15744011 rs34365511 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:490:107,107:24,38:625 +1 15744287 rs67861674 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:391:87,82:116,108:848 +1 15744894 rs2496318 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:314:0,127:40,167:294 +1 15745036 rs35489138 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:411:90,85:104,102:451 +1 15745254 rs2496316 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:563:125,134:112,125:895 +1 15745282 rs2496315 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:516:117,129:109,123:427 +1 15745344 rs34539728 GAGCCC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:455:101,105:28,10:410 +1 15745380 rs7525279 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:467:100,101:37,20:661 +1 15746793 rs12070915 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:751:178,178:196,199:974 +1 15750217 rs2473355 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:143,123:175,153:1029 +1 15762024 rs57637443 CGT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:393:87,101:0,0:259 +1 15769876 rs35149641 G GC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:513:0,225:64,64:425 +1 15772567 rs72643663 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:684:158,163:187,178:1193 +1 15798936 rs12028097 A G 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=3;callsetnames=HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:282:2,280:1,275:206 +1 15823061 rs4661636 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:792:0,359:90,428:501 +1 15825017 rs34567745 G GTC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,249:47,47:372 +1 15859483 rs12121541 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:785:0,367:88,426:534 +1 15879265 rs2753288 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:481:40,242:0,202:229 +1 15881153 rs2753289 G T 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1|1:15881153_G_T:712:0,366:0,357:225 +1 15881159 rs72645818 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:15881153_G_T:808:190,178:184,172:1073 +1 15884070 rs139361494 C CAG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:807:172,200:35,35:895 +1 15889781 rs4518900 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:442:103,97:17,19:693 +1 15891620 rs2753299 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:665:158,141:190,171:776 +1 15899905 . G GA 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:673:183,169:0,0:393 +1 15920206 rs72645859 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:665:158,145:185,170:811 +1 15932053 rs72647103 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:124,137:152,164:1317 +1 15937835 rs187236688 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:117,120:141,149:676 +1 15958124 rs56219492 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:819:201,186:230,207:996 +1 15969521 . C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:494:103,102:140,133:784 +1 16000486 rs1240334 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16000486_A_G:573:1,258:54,309:419 +1 16000498 rs116184968 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:16000486_A_G:636:138,133:190,171:813 +1 16004857 rs1240335 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:129,125:150,149:620 +1 16012081 rs72647145 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:482:78,72:69,57:1217 +1 16028448 rs72647147 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:672:155,151:38,26:715 +1 16030382 rs72647148 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:524:98,108:149,162:1148 +1 16032042 rs72647150 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:384:80,77:110,113:975 +1 16037412 rs113639621 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:158,145:174,166:528 +1 16039253 rs35789551 A AC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,263:29,29:325 +1 16051349 rs61782448 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:131,125:147,145:727 +1 16051584 rs4661647 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:469:0,221:38,253:303 +1 16058489 rs72647153 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:116,126:152,157:785 +1 16065303 rs147907985 ACACACT A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:468:108,100:0,0:774 +1 16067525 rs72647155 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:511:103,114:139,154:862 +1 16068615 rs10927844 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:509:0,211:92,303:416 +1 16072028 rs201507087 A AAGAG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:408:108,90:0,0:244 +1 16072621 rs112729804 GGTTCAATC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:437:90,108:27,16:620 +1 16074468 rs10927846 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:131,122:171,164:1100 +1 16074494 rs45615332 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:134,127:174,164:1234 +1 16075128 rs2062595 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:504:131,102:142,130:761 +1 16075835 rs67484410 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:109,108:150,149:1147 +1 16075906 rs10927848 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:126,129:165,161:967 +1 16075981 rs11585750 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:130,151:149,181:613 +1 16076203 rs11580509 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:123,131:161,168:881 +1 16076258 rs4661649 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:544:0,252:59,305:350 +1 16076705 rs10927849 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:129,135:162,161:748 +1 16078386 rs7539501 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:366:91,98:0,0:749 +1 16079403 rs12741030 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:626:148,144:169,157:397 +1 16079604 rs12741364 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:465:108,94:123,116:510 +1 16080171 rs12725198 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:137,138:168,164:1105 +1 16080501 rs12725694 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:129,131:171,176:1239 +1 16080618 rs12725833 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:637:154,142:0,0:737 +1 16080642 rs34644089 C CT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:536:121,120:0,0:284 +1 16080875 rs199692684 T TCTCAGCTCACTGCAAC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:311:72,70:4,11:300 +1 16080942 rs12731262 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:387:102,95:85,85:321 +1 16081033 rs12755344 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:447:110,101:83,89:387 +1 16082127 rs34108989 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:637:148,133:197,164:1011 +1 16089205 rs7512358 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:498:0,228:58,269:401 +1 16093560 rs904912 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:552:0,241:86,320:343 +1 16095316 rs2271545 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,286:76,357:359 +1 16096256 rs7368383 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:467:0,222:0,220:250 +1 16096893 rs12146078 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_IonExomeTVC_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,236:65,293:400 +1 16096934 rs10927851 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_IonExomeTVC_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:548:0,222:79,291:387 +1 16097237 rs10803398 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,269:60,315:404 +1 16097511 rs7513439 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:16097511_T_A:550:0,256:47,303:304 +1 16097513 rs7544506 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:16097511_T_A:549:0,255:47,302:304 +1 16098866 rs10927852 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,240:68,296:373 +1 16100044 rs12045331 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,257:51,308:323 +1 16100763 rs72506928 T TG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:748:0,332:90,90:483 +1 16101979 rs35495014 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:514:0,228:33,261:275 +1 16102124 rs12730950 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,256:50,302:347 +1 16103182 rs72506929 A AC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:504:0,208:78,78:439 +1 16103218 rs12043036 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:547:0,226:101,101:423 +1 16107066 rs4436388 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:635:0,296:63,347:388 +1 16108380 rs35254883 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:388:0,177:33,33:313 +1 16109212 rs72647169 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:574:131,119:158,152:671 +1 16109669 rs10737910 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:573:1,269:64,314:408 +1 16110479 rs10927853 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:457:0,213:0,213:255 +1 16111720 rs10803399 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:597:1,275:52,317:230 +1 16115333 rs1472554 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,254:55,305:364 +1 16115747 rs2902164 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:475:0,210:67,269:346 +1 16115759 rs2862159 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:16115759_T_A:447:0,205:59,257:347 +1 16115760 rs2862160 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:16115759_T_A:446:0,204:59,256:347 +1 16115970 rs2862161 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:490:0,206:78,78:409 +1 16116866 rs6698027 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16116866_G_A:525:0,216:79,289:427 +1 16116889 rs4661650 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16116866_G_A:499:0,198:66,260:380 +1 16116945 rs6674520 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:411:0,143:52,52:391 +1 16117305 rs113140431 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:600:5,268:0,0:289 +1 16117922 rs6701487 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:637:1,280:55,334:329 +1 16118173 rs4661653 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:608:0,270:76,344:300 +1 16118218 rs4661337 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:664:0,295:91,380:335 +1 16118928 rs6656299 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,230:70,298:391 +1 16120005 rs12736823 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:448:0,158:81,81:472 +1 16120051 rs7552462 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:485:0,177:110,110:453 +1 16131401 rs59578676 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:16131401_T_C:596:125,136:34,27:981 +1 16131412 rs6703080 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:16131401_T_C:583:118,134:43,22:853 +1 16131493 rs60263486 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:514:103,123:103,123:331 +1 16131729 rs66460266 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:124,158:160,182:505 +1 16132066 rs142956209 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:16132066_T_C:499:116,120:116,120:378 +1 16132076 rs146151788 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:16132066_T_C:489:111,118:111,118:352 +1 16132172 rs12123704 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:473:123,97:140,110:452 +1 16132315 rs113982867 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:497:119,126:96,95:495 +1 16132475 rs113141042 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:440:93,82:117,102:575 +1 16132570 rs111346894 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:415:94,86:120,104:489 +1 16133319 rs112915092 TA T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:446:116,100:92,82:462 +1 16133396 rs12738340 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,248:51,51:345 +1 16133525 rs56137831 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:663:156,131:204,167:808 +1 16133838 rs66673012 A T 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:710:143,140:183,182:1059 +1 16133987 rs7417535 T C 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:795:136,111:177,148:1033 +1 16134072 rs61744357 C T 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:816:134,135:124,126:498 +1 16134440 rs112695371 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:120,138:138,162:619 +1 16134501 rs111589297 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:115,130:150,161:832 +1 16135039 rs111920468 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:124,134:160,161:717 +1 16135448 rs113455396 G GC 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:683:143,151:56,39:591 +1 16135517 rs66698451 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:140,131:161,146:637 +1 16136108 rs4661654 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:631:0,263:78,335:426 +1 16136174 . A AT 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:545:19,126,128:5,105,128:455 +1 16136174 . AT A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:545:19,126,128:5,105,128:455 +1 16137316 rs68106506 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:722:229,205:137,136:1613 +1 16137396 rs2090086 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:685:0,291:104,383:504 +1 16137436 rs72647191 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:652:161,126:195,151:941 +1 16137441 rs2090085 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:655:0,283:95,357:629 +1 16137738 . C CA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:327:1,59,81:1,59,81:198 +1 16137738 . CA C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:327:1,59,81:1,59,81:198 +1 16137774 rs16852021 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:541:155,149:84,106:919 +1 16137901 rs67835524 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:147,137:166,149:842 +1 16138059 rs12121764 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:630:0,307:64,332:405 +1 16138095 rs16852022 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:655:175,145:187,149:844 +1 16138329 rs112970147 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:127,120:156,144:549 +1 16139916 rs10927856 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:16139916_G_A:484:101,97:30,34:854 +1 16139932 rs11806941 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1|0:16139916_G_A:501:105,109:35,28:780 +1 16140272 rs2902166 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:133,131:151,148:475 +1 16140485 rs200910813 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:419:86,78:28,23:589 +1 16140627 rs112291802 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:369:83,88:0,0:481 +1 16140872 rs72647195 T A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:771:171,169:56,26:747 +1 16141215 rs113100790 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:465:144,94:88,84:321 +1 16141300 rs112016494 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:441:76,89:88,107:372 +1 16141612 rs61499152 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:16141612_A_G:420:84,99:84,99:616 +1 16141614 rs10927857 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1|0:16141612_A_G:426:99,84:99,84:615 +1 16141635 rs10927858 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1|1:16141612_A_G:428:0,193:0,193:266 +1 16141731 rs57486970 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:118,149:165,165:523 +1 16141862 rs10927859 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:16141862_C_T:667:138,162:170,190:1004 +1 16141870 rs72647196 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:16141862_C_T:655:164,131:195,161:971 +1 16142427 rs16852024 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:631:100,116:56,51:1195 +1 16142587 rs7536562 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:394:86,110:65,69:562 +1 16142630 rs7514602 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:99,105:135,140:946 +1 16142960 rs2862162 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:629:130,147:168,182:1162 +1 16143511 rs112024238 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:663:109,154:67,55:1267 +1 16143630 rs1976401 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:598:146,100:50,42:952 +1 16143765 rs56382381 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:717:157,162:188,206:837 +1 16143779 rs1976402 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:721:161,155:202,202:875 +1 16143864 rs55801855 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:710:164,169:198,187:958 +1 16144010 rs56375612 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:774:166,202:191,217:1098 +1 16144174 rs6429781 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:772:0,373:71,415:449 +1 16144674 rs66690832 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:593:126,126:177,153:703 +1 16144762 rs9793250 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:135,125:182,168:1167 +1 16144799 rs9793301 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:136,132:161,154:572 +1 16144855 rs6674071 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:123,127:152,162:783 +1 16145143 rs6699394 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:807:180,191:214,226:925 +1 16145259 rs67241956 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:659:130,156:184,185:694 +1 16145371 rs4661655 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:595:168,154:132,137:414 +1 16145559 rs142860032 AAAAC A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:652:151,156:22,17:427 +1 16145700 rs4661339 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:734:170,173:195,192:882 +1 16145970 rs4661656 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,251:31,282:275 +1 16146115 rs111504100 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:660:151,148:167,172:524 +1 16146193 rs113730967 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:628:140,131:178,171:648 +1 16146247 rs111817774 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:125,111:152,126:489 +1 16146331 rs113424458 CA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:487:112,109:112,109:99 +1 16147019 rs68100486 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:138,127:171,169:977 +1 16147256 rs67235754 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:585:133,141:144,161:855 +1 16147377 rs10803401 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:502:128,105:119,101:412 +1 16147625 rs7513676 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:141,120:155,130:744 +1 16147798 rs4661657 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:134,120:161,134:382 +1 16147851 rs7516123 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:16147851_C_T:549:121,131:149,145:553 +1 16147854 rs7538103 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:16147851_C_T:548:119,131:148,145:530 +1 16147955 rs4661340 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:511:126,105:151,124:579 +1 16148110 rs112393679 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:86,141:51,26:734 +1 16148258 . G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:16148258_G_C:462:122,115:0,0:442 +1 16148267 . T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:16148258_G_C:449:116,112:0,0:404 +1 16148481 rs113132836 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:519:132,111:132,111:268 +1 16148600 rs28537253 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:644:0,286:72,336:437 +1 16148794 rs181954934 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:240:48,42:25,20:598 +1 16148834 rs113824309 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:316:66,66:20,13:458 +1 16149301 rs6677321 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:691:176,143:210,159:823 +1 16149617 rs9729070 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:451:127,84:0,0:709 +1 16150383 rs72649604 T G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:509:136,69:0,0:802 +1 16150384 rs7537101 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:510:0,206:0,0:817 +1 16150583 rs112233748 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:411:94,87:114,97:335 +1 16150761 rs59417776 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:502:118,105:29,14:424 +1 16150865 rs146258974 T TG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:122,98:20,11:424 +1 16150918 rs59549164 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:505:127,99:149,114:498 +1 16150976 rs61782184 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:16150976_G_A:486:105,109:129,137:612 +1 16150997 rs61782185 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:16150976_G_A:454:102,100:126,116:543 +1 16151000 rs61782186 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:16150976_G_A:450:99,97:122,116:579 +1 16151269 . C CAAA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=2;callsetnames=HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:193:109,82:109,82:198 +1 16151282 rs114237934 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:284:167,117:122,96:385 +1 16151285 rs72882505 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:531:175,123:124,102:735 +1 16155699 rs147361977 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:478:113,101:126,126:370 +1 16155788 rs112917580 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:485:120,100:18,26:548 +1 16155803 rs111613091 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:493:118,104:27,15:502 +1 16156406 rs2202045 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:588:0,262:76,328:424 +1 16157218 rs6689074 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:626:0,268:109,355:553 +1 16157722 rs6674380 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:149,118:182,145:998 +1 16158093 rs6692367 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:163,159:97,115:938 +1 16159067 rs66551897 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:670:142,137:185,194:1338 +1 16159790 rs12568613 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:536:0,230:92,92:473 +1 16160773 rs4661342 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:774:159,194:196,228:910 +1 16161530 rs6688051 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:692:0,297:102,394:491 +1 16161836 rs4661661 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:708:176,152:200,185:727 +1 16161867 rs4661662 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:662:0,317:61,365:316 +1 16161958 rs4661663 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:529:145,101:18,19:474 +1 16162092 rs4661664 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:142,106:158,138:406 +1 16162179 rs4661665 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:539:135,107:161,134:667 +1 16162186 rs4661343 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:547:0,252:66,311:526 +1 16162471 rs4661666 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:511:107,101:43,45:1047 +1 16162554 rs6666548 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:131,110:165,134:557 +1 16162731 rs4661667 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:111,127:156,163:1069 +1 16162977 . CT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:325:69,74:58,67:125 +1 16163820 rs7542781 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:735:0,331:70,396:388 +1 16164154 rs1976400 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:640:0,292:69,356:331 +1 16164188 rs1566500 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:733:163,172:201,204:1123 +1 16164787 rs1002165 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:658:144,166:162,186:535 +1 16165043 rs1969065 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:532:0,233:65,298:370 +1 16165247 rs10927863 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:772:162,178:214,214:1094 +1 16165661 rs10927864 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:743:180,151:217,186:1151 +1 16165901 rs61622974 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:124,155:138,170:401 +1 16166460 rs34295829 C CA 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:367:89,97:75,77:269 +1 16167036 rs7519934 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:647:150,144:173,169:644 +1 16167247 rs7543393 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:670:133,153:160,171:574 +1 16167799 rs12135073 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:720:149,172:191,199:1210 +1 16169121 rs58998288 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:137,149:124,136:352 +1 16169734 rs111736127 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:593:152,153:144,144:364 +1 16172443 rs4661668 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:733:161,146:212,184:941 +1 16173110 rs12744578 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:685:155,192:137,167:494 +1 16175104 rs34224670 CT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:100,103:41,34:878 +1 16177009 rs2062592 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:631:0,286:74,345:442 +1 16177578 rs988116 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:711:0,322:79,393:326 +1 16179208 rs2062593 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:789:0,370:77,429:457 +1 16180498 rs11576202 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:121,138:156,160:575 +1 16181911 rs72649621 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:887:201,205:250,234:835 +1 16181979 rs10803402 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:805:0,374:81,448:430 +1 16182813 rs4661344 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,300:46,327:366 +1 16183244 rs10927868 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:493:120,105:138,124:569 +1 16183328 rs72649624 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:658:163,147:173,165:875 +1 16187760 rs7540404 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:489:0,224:39,39:358 +1 16188681 rs6701290 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:800:0,381:74,429:466 +1 16189061 rs6695698 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:727:0,344:60,384:398 +1 16189323 rs12354112 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:131,124:170,154:811 +1 16189969 rs67210023 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:748:168,150:235,193:1191 +1 16191247 rs59057778 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:489:136,130:107,100:646 +1 16191759 rs10803404 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,271:67,338:377 +1 16192394 rs10927870 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,244:61,305:349 +1 16194658 rs112779784 T A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:540:124,141:124,141:198 +1 16194933 . C CT 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:120,130:114,121:148 +1 16196075 . G GTATT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:388:0,116,85:0,0,0:259 +1 16196075 . G GTATTTATT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:388:0,116,85:0,0,0:259 +1 16197247 rs36118445 A AAGG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:642:0,315:53,53:450 +1 16197581 rs56062384 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:128,153:144,175:491 +1 16199051 rs9782984 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:420:49,201:0,152:331 +1 16201502 rs16852052 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:739:169,175:204,198:1221 +1 16201775 rs56007038 T TTTTAA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:861:0,406:99,99:431 +1 16202204 rs12136202 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:854:203,180:245,224:1125 +1 16204501 rs12125239 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:139,156:158,172:528 +1 16205102 rs6665768 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:785:0,362:84,425:427 +1 16205604 rs139619251 T TG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:114,135:33,29:829 +1 16207703 rs12128413 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:677:153,160:177,178:857 +1 16208604 rs2862747 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:715:0,338:74,392:468 +1 16208633 rs2862748 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:744:0,353:77,407:445 +1 16208928 rs6687759 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:533:82,125:42,34:790 +1 16210373 rs6429786 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:521:0,201:35,236:284 +1 16211234 rs33965389 CT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:541:1,260:1,260:99 +1 16211277 rs594906 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:721:72,392:0,316:369 +1 16212219 rs4661670 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:694:164,152:190,189:1200 +1 16212739 rs598371 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:692:0,319:82,384:459 +1 16215608 rs1262788 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:661:0,259:101,355:487 +1 16218566 rs139816002 A C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:333:48,55:29,23:597 +1 16220474 rs56356412 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:142,128:188,163:943 +1 16223695 rs559197 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:642:5,270:84,349:287 +1 16223840 rs643919 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:641:0,270:79,349:394 +1 16224668 . T TTGTGTGTG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:334:87,52:87,52:99 +1 16226634 rs10754897 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:703:0,313:98,405:393 +1 16228550 rs112163175 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:496:109,105:137,124:541 +1 16229084 rs12142732 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:737:0,347:46,390:327 +1 16231746 rs6702355 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:703:1,304:79,382:300 +1 16231809 rs11590647 C G 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:724:198,161:176,148:411 +1 16241830 rs72649636 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:111,127:155,163:932 +1 16241984 rs12139673 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:780:163,175:218,225:1208 +1 16245610 rs35883633 GT G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:633:125,161:33,32:712 +1 16246674 rs111784357 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:134,165:163,198:749 +1 16246842 rs66816424 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:736:167,165:195,203:741 +1 16249930 rs12142566 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:709:151,176:178,201:941 +1 16251571 rs4661345 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:816:0,385:89,436:544 +1 16252907 rs56095493 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:650:174,165:151,148:347 +1 16253417 rs848207 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,273:73,342:417 +1 16256007 rs848209 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,269:46,303:351 +1 16259813 rs848210 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,248:68,296:440 +1 16263452 rs848212 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:554:0,269:27,290:295 +1 16265403 rs115404746 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:137,122:158,140:778 +1 16265422 rs848214 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:544:0,256:64,302:395 +1 16265904 rs41269155 T A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:701:129,128:181,155:1006 +1 16266972 rs11583415 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:576:136,124:159,154:899 +1 16267040 rs698889 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,264:57,302:407 +1 16267371 rs698890 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:545:37,300:0,257:300 +1 16267613 rs56096445 T G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|0:16267608_C_G:536:107,121:0,0:749 +1 16269477 rs57569573 T TG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:499:114,113:19,19:535 +1 16269737 rs4661672 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:542:108,99:132,137:748 +1 16271156 rs12134932 C A 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:135,116:168,139:548 +1 16272250 rs848217 A G 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:128,129:149,159:575 +1 16273995 rs742617 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:523:0,230:81,296:342 +1 16275247 rs2268341 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:136,137:169,158:594 +1 16275506 rs848218 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:659:165,144:181,170:932 +1 16276536 rs11489779 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:16276536_A_G:610:130,141:160,186:1097 +1 16276553 rs11489780 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:16276536_A_G:589:127,144:149,173:863 +1 16277501 rs55805725 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:471:97,86:145,128:863 +1 16277647 rs848189 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:522:128,107:147,133:750 +1 16277808 rs200582739 A AAGGAAGGGAGAGAGGG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:373:97,77:0,0:342 +1 16278891 rs12137597 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:119,121:145,154:684 +1 16278949 rs12137628 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:611:126,131:174,183:1278 +1 16279386 rs926619 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:665:142,158:176,189:1138 +1 16281573 rs57680346 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:143,121:174,151:783 +1 16283024 rs56048916 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:721:154,166:191,208:1328 +1 16285342 rs848194 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,253:82,316:441 +1 16285699 rs698892 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:456:0,208:59,253:396 +1 16286295 rs68185708 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:637:143,135:178,181:953 +1 16286522 rs848195 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:513:0,231:66,290:386 +1 16288528 rs11806925 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:538:129,111:157,138:636 +1 16292742 rs848199 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:596:0,271:74,337:413 +1 16292884 rs149687393 AT A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:153,126:44,31:880 +1 16296039 rs4661674 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:497:109,105:146,135:753 +1 16296695 rs41339145 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:733:182,160:220,175:895 +1 16299312 rs10927875 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:625:143,153:156,170:895 +1 16302055 rs9729433 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:479:108,104:133,127:615 +1 16302982 rs698893 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:745:178,173:196,196:948 +1 16303833 . C CT 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:329:8,66,72:1,56,72:320 +1 16303833 . CT C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:329:8,66,72:1,56,72:320 +1 16304398 rs34178196 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:119,128:165,160:851 +1 16305279 rs12138117 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:736:169,130:214,188:1210 +1 16306012 rs848295 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:775:0,359:63,415:377 +1 16306846 rs3979179 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:120,136:156,162:1068 +1 16307371 rs6656953 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:636:146,121:0,0:1000 +1 16307418 rs36006064 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:374:139,76:0,0:259 +1 16307422 rs6659958 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:409:148,76:0,0:364 +1 16308412 rs2024758 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:16308408_C_CT:724:173,154:43,35:1153 +1 16308447 rs848309 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:150,145:46,37:972 +1 16309073 rs848310 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:647:0,292:62,351:373 +1 16309856 rs848312 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:666:0,298:114,377:507 +1 16310183 rs848313 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,243:104,321:540 +1 16310737 . C CT 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:459:11,93,99:1,84,99:339 +1 16310737 . CT C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:459:11,93,99:1,84,99:339 +1 16311027 rs1739812 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:734:0,322:91,413:439 +1 16311231 rs7516754 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:736:0,351:56,391:407 +1 16311563 rs1739813 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:721:162,178:180,195:482 +1 16312023 rs34235442 AT A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,277:66,66:402 +1 16312083 rs34764449 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:666:158,140:27,32:744 +1 16312138 rs1763632 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:672:0,307:78,374:447 +1 16312732 rs1739814 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,230:75,295:427 +1 16313172 rs3961710 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:665:157,123:43,61:946 +1 16313274 rs1739815 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:725:0,322:93,397:492 +1 16313363 rs1739816 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:517:0,243:31,274:272 +1 16313788 rs4307563 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:738:174,167:200,203:1054 +1 16313867 rs2983120 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:613:1,281:54,332:337 +1 16315146 rs848300 C T 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:479:85,288:0,0:438 +1 16315223 rs1739817 G A 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1|1:16315223_G_A:419:47,206:0,0:330 +1 16315227 rs1763627 C G 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1|1:16315223_G_A:417:46,205:0,0:321 +1 16316119 rs848302 T A 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidSE75bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:166,161:0,0:906 +1 16316516 rs848303 T C 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidSE75bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:497:52,278:0,0:324 +1 16316631 rs848304 T C 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:556:65,311:0,0:331 +1 16319105 rs59454432 A G 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidSE75bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:170,161:0,0:889 +1 16319816 rs55718603 A G 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:567:165,141:0,0:562 +1 16319862 rs1999736 G C 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:526:137,144:0,0:594 +1 16320028 rs10927879 G A 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:179,157:0,0:844 +1 16320077 rs11582497 C T 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:174,159:0,0:506 +1 16320499 rs34957618 G C 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:574:167,147:0,0:572 +1 16321010 rs4661679 A G 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidSE75bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:609:82,357:0,0:447 +1 16321523 rs4661681 T C 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=5;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:662:197,206:0,0:1420 +1 16321901 rs848308 A G 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=5;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:646:82,370:0,0:447 +1 16325429 rs6670469 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:633:149,139:140,134:963 +1 16325972 rs1763621 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:652:0,298:68,361:367 +1 16326021 rs1763620 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:684:92,387:0,0:492 +1 16326043 rs59298781 T TTTTA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:442:0,231:0,0:259 +1 16326113 rs1739825 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:659:0,305:47,352:321 +1 16326175 rs1739826 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:634:0,298:44,342:305 +1 16326770 rs55927303 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:136,117:155,142:545 +1 16326935 rs1763619 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:696:142,155:183,206:978 +1 16328116 rs1627145 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:150,128:191,163:877 +1 16328744 rs35867612 A ATTT 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:264:55,45:46,25:346 +1 16328941 rs3978500 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:16328941_T_C:451:112,78:38,38:1277 +1 16328942 rs3961595 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:16328941_T_C:448:111,76:38,38:1277 +1 16328944 rs3961596 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:16328941_T_C:446:110,75:38,38:1277 +1 16328947 rs3961597 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:16328941_T_C:438:113,76:35,29:904 +1 16328959 rs3961598 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:16328941_T_C:476:122,87:20,29:680 +1 16328964 rs3978496 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:16328941_T_C:471:120,88:16,30:558 +1 16329833 rs55714825 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:543:130,124:149,142:505 +1 16330100 rs3856280 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:546:133,104:160,133:651 +1 16331108 rs1739833 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:415:64,68:43,33:741 +1 16331838 rs1763614 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:499:108,104:143,142:847 +1 16333569 rs1763611 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:122,112:152,146:788 +1 16335144 rs1739835 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:505:107,77:168,126:1169 +1 16335302 rs34033692 CA C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:482:84,110:37,49:696 +1 16335527 rs1763610 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:484:101,110:137,137:891 +1 16335730 rs68070825 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:506:126,113:145,121:382 +1 16337252 rs1739836 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:754:156,184:197,220:1426 +1 16337509 rs1763607 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:801:183,181:228,204:1199 +1 16337933 rs1739837 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:546:129,114:161,140:630 +1 16338282 rs1763606 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:123,136:155,162:677 +1 16338474 rs6696912 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:620:126,148:169,173:719 +1 16338925 rs1763605 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:123,118:142,139:565 +1 16339313 rs10927886 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:681:166,148:176,183:518 +1 16339772 rs1763604 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:132,154:157,170:415 +1 16339809 rs1763603 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:611:123,162:144,185:396 +1 16339989 rs1739838 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:522:133,149:113,122:464 +1 16340217 rs57972221 A AACAGTGCTTGGC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:101,110:33,37:626 +1 16340460 rs1763601 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:111,115:146,166:1070 +1 16340761 rs1048334 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:574:116,138:151,169:981 +1 16340843 rs34035811 TC T 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:522:117,119:21,28:382 +1 16340879 rs1048302 T G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:593:118,126:40,61:949 +1 16340951 rs1048261 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:611:132,144:148,184:574 +1 16341342 rs11552856 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:626:143,140:35,31:894 +1 16341354 rs1048245 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:634:147,149:35,22:760 +1 16341560 rs35441766 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:577:129,137:154,156:529 +1 16341649 rs1048238 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:506:114,112:135,144:693 +1 16341733 rs1048237 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:538:129,119:154,135:541 +1 16342237 rs1739840 A G 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:126,123:157,155:792 +1 16342350 rs761759 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:122,121:154,150:619 +1 16342419 rs761760 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:124,119:156,142:564 +1 16342602 rs1763599 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:574:114,131:154,166:980 +1 16342727 rs1739841 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:16342727_A_G:557:117,134:152,155:647 +1 16342737 rs1763598 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:16342727_A_G:566:112,136:162,164:773 +1 16342848 rs1739842 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:129,108:156,129:659 +1 16343254 rs1739843 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:445:86,106:125,117:547 +1 16343297 rs1763597 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:16343297_C_T:484:97,118:120,143:746 +1 16343322 rs1739844 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:16343297_C_T:470:102,109:119,138:552 +1 16343835 rs1763596 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:116,135:153,183:1063 +1 16344360 rs732286 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_IonExomeTVC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:685:129,173:159,191:654 +1 16344402 rs945416 G A 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_IonExomeTVC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:690:131,150:172,202:1056 +1 16344494 rs1572381 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:618:140,121:163,144:548 +1 16344625 rs945417 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:583:124,132:163,167:777 +1 16344730 rs945418 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:547:125,126:143,148:427 +1 16344827 rs1056207 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:651:138,139:187,187:1211 +1 16344858 rs945419 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:611:139,126:185,164:1062 +1 16345208 rs945420 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:127,139:162,167:812 +1 16345393 rs945421 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:594:138,132:166,157:857 +1 16345619 rs945422 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:506:118,109:136,140:633 +1 16346507 rs3754322 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:139,125:166,145:897 +1 16346533 rs66708208 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:139,126:169,147:789 +1 16367696 rs10436955 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:16367696_C_T:534:110,127:28,28:810 +1 16367710 rs113543279 G GCATGAGC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:16367696_C_T:520:111,124:23,35:705 +1 16367722 rs12137681 G C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:16367696_C_T:528:113,127:27,27:810 +1 16367852 rs10436958 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:497:114,98:143,131:765 +1 16367937 rs10436959 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:468:109,92:144,116:695 +1 16368133 rs6696416 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:133,120:161,134:579 +1 16368206 rs2050521 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:114,112:151,140:757 +1 16368324 rs10803410 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:111,124:156,161:1012 +1 16368403 rs6683445 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:110,121:140,156:1132 +1 16368481 rs35127884 C CCT 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=3;datasetnames=CGnormal,HiSeqPE300x,SolidSE75bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:509:112,111:35,31:651 +1 16390813 rs1414499 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:510:0,225:78,281:443 +1 16390988 rs1414500 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:453:1,212:52,247:383 +1 16391056 rs9442234 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:443:1,181:93,262:489 +1 16392487 rs10803416 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:553:1,242:50,291:336 +1 16393357 rs9442235 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,265:69,320:417 +1 16393393 rs11590986 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:615:1,277:78,345:428 +1 16393811 rs10927901 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,257:85,340:438 +1 16393952 rs10803417 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:534:0,231:80,305:451 +1 16394388 rs10803418 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,258:88,334:454 +1 16395029 rs10803419 G T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,258:78,331:317 +1 16395147 rs10927902 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,222:100,322:471 +1 16407499 rs138981325 C CCTGGAGTG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:597:0,287:29,29:309 +1 16407987 rs28553367 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:567:72,309:0,235:393 +1 16408031 rs28420337 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:679:0,291:85,367:409 +1 16408820 rs4077113 G C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:518:0,235:63,63:461 +1 16410124 rs4661686 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:514:14,225:0,0:226 +1 16411016 rs34568113 GCCT G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:478:1,238:26,26:362 +1 16411150 rs4661349 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:544:121,119:157,142:846 +1 16411310 rs57248814 AC A 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:571:3,251:50,50:255 +1 16411877 rs4661687 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:672:1,303:63,359:378 +1 16413069 rs55654889 C T 50 PASS platforms=4;platformnames=CG,10X,Illumina,Solid;datasets=5;datasetnames=CGnormal,10XChromium,HiSeqPE300x,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,10XGATKhaplo,HiSeqPE300xGATK,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:418:0,177:36,36:322 +1 16413191 rs28731301 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:473:56,238:0,176:355 +1 16413291 rs2064595 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:561:0,248:76,313:435 +1 16413870 rs2862751 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,261:0,261:262 +1 16414088 rs4661351 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:701:0,318:93,397:476 +1 16417426 rs28694524 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,234:82,300:432 +1 16417623 rs28441102 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,235:80,312:426 +1 16418598 rs28453747 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:543:0,250:60,303:366 +1 16419219 rs28490872 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,220:101,304:503 +1 16419746 rs148082359 TTGTG T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:349:0,167:0,167:198 +1 16420578 rs56384366 A G 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=5;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:656:105,397:0,262:587 +1 16422010 rs28757713 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,256:56,301:365 +1 16422817 rs34124722 CA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:437:0,221:0,0:160 +1 16423768 rs28437624 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:613:0,270:59,326:373 +1 16424085 rs28616748 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:682:0,307:81,373:444 +1 16424348 rs28634690 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,263:51,309:351 +1 16424926 rs28752119 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16424926_C_G:475:0,218:0,218:364 +1 16424946 rs28633657 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16424926_C_G:516:0,234:0,230:237 +1 16425323 rs113984088 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:464:0,194:84,278:396 +1 16425506 rs370645752 GGGA G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:449:0,199:62,62:374 +1 16425590 rs28555238 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,265:66,321:408 +1 16425900 rs28834141 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:659:1,295:88,368:489 +1 16426576 rs146033944 C CTA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:518:0,249:25,25:331 +1 16429085 rs4642884 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:693:0,325:52,377:342 +1 16431444 rs28767869 C T 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidSE75bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:496:35,267:0,0:304 +1 16433678 rs28825449 C G 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidSE75bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:596:19,314:0,0:246 +1 16438409 rs34564218 G GCA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:337:0,165:0,0:160 +1 16440445 rs55816017 G A 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:650:183,188:121,128:1312 +1 16441728 rs11260867 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:507:0,233:58,277:396 +1 16442245 rs147756990 G GC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:432:0,205:18,18:285 +1 16442472 rs12130825 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1|1:16442472_G_T:549:37,292:0,255:289 +1 16442477 rs12130826 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1|1:16442472_G_T:541:39,289:0,250:286 +1 16442847 rs924202 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:595:115,143:151,180:854 +1 16442908 rs4661702 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:653:94,374:0,280:323 +1 16443231 rs4661703 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:529:0,208:0,192:574 +1 16444604 rs144996924 G GCA 50 PASS platforms=2;platformnames=Illumina,Solid;datasets=2;datasetnames=HiSeqPE300x,SolidSE75bp;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,10,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:403:6,196:0,0:169 +1 16446349 rs924201 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:526:0,247:53,291:368 +1 16447204 rs10796409 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,10XGATKhaplo,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:554:0,238:79,317:371 +1 16448037 rs4661706 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:622:107,365:0,258:400 +1 16448302 rs6681033 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:679:0,287:99,384:468 +1 16449680 rs6684802 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:463:0,213:45,252:341 +1 16451413 rs1803527 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:448:0,186:78,264:406 +1 16452998 rs3820610 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,246:46,279:347 +1 16455052 rs11260721 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,267:77,326:465 +1 16455143 rs4661707 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:550:0,259:55,302:330 +1 16460743 rs147659128 TAAC T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:512:0,221:84,84:462 +1 16462798 . A AAAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:291:0,80,75:0,0,0:259 +1 16462798 . A AAATAATAAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:291:0,80,75:0,0,0:259 +1 16464673 rs2230597 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_IonExomeTVC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:704:129,150:152,186:686 +1 16465370 rs72636524 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:124,109:161,155:1027 +1 16467391 rs12084478 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:639:116,129:116,129:1574 +1 16467645 rs3820609 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:129,129:153,154:1007 +1 16467924 rs3768293 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:123,130:148,169:955 +1 16469653 . T TGATG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:248:0,63,51:0,0,0:160 +1 16469653 . T TGATGGATG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:248:0,63,51:0,0,0:160 +1 16471000 rs12406250 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:564:120,117:144,180:442 +1 16471455 rs12405694 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:690:171,141:203,172:1016 +1 16472993 rs12409704 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:476:110,99:135,132:606 +1 16473514 rs1566145 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:140,121:171,158:887 +1 16473979 rs2863840 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:626:0,283:91,348:532 +1 16474110 rs2863841 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:643:128,152:178,186:1212 +1 16474701 rs6603867 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:133,147:177,186:1032 +1 16474839 rs35127370 AC A 50 PASS platforms=4;platformnames=CG,Illumina,Ion,10X;datasets=4;datasetnames=CGnormal,HiSeqPE300x,IonExome,10XChromium;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:110,103:40,12:513 +1 16475123 rs6678616 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0|1:16475123_C_T:624:109,124:135,147:865 +1 16475126 rs6678618 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0|1:16475123_C_T:621:106,124:132,148:817 +1 16478461 rs904105 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:607:0,275:78,335:461 +1 16478654 rs1472408 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:104,146:122,177:738 +1 16479181 rs4661709 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:544:0,252:45,295:325 +1 16479505 rs6684516 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:105,123:129,143:577 +1 16482976 rs6603883 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:485:112,114:128,133:734 +1 16485811 rs11260822 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:121,137:171,170:1063 +1 16486293 rs4661710 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:670:147,156:185,177:561 +1 16486392 rs4661711 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:673:0,286:115,395:504 +1 16486793 rs904106 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:680:0,309:89,381:486 +1 16486954 rs3030166 CAG C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:483:88,100:0,0:500 +1 16487754 rs2088392 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,264:88,349:433 +1 16488267 rs12401559 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:115,134:147,168:1081 +1 16488669 rs12408813 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:136,150:174,173:572 +1 16488823 rs904107 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:612:0,269:83,348:396 +1 16489106 rs729402 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:392:75,71:22,22:610 +1 16492021 rs12408442 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:136,99:177,143:1151 +1 16492210 . GCA G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:329:81,79:81,79:198 +1 16492862 rs6603884 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:362:0,158:65,65:410 +1 16493225 rs4661712 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:516:112,103:158,145:1051 +1 16493516 rs4661356 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,269:49,318:332 +1 16494015 rs4661357 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,235:39,272:278 +1 16495001 rs6662097 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,242:103,345:488 +1 16495094 rs6684117 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16495094_G_A:605:0,255:108,359:500 +1 16495108 rs6675579 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16495094_G_A:626:0,266:112,373:494 +1 16495236 rs6662310 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:604:1,274:72,334:401 +1 16495690 rs4661713 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:459:0,222:0,211:299 +1 16495702 rs4661714 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:506:0,231:0,216:384 +1 16495846 rs4661715 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16495846_C_T:545:1,235:79,313:396 +1 16495871 rs4661716 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16495846_C_T:577:0,251:87,331:438 +1 16495914 rs4661717 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:569:1,272:57,303:426 +1 16495953 rs4233539 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:539:0,244:70,296:416 +1 16495998 rs924206 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:561:0,258:68,307:430 +1 16496299 rs924205 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:629:0,283:64,347:376 +1 16497272 rs28629977 G C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:497:93,93:53,35:930 +1 16497952 rs10796427 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:485:0,195:0,0:400 +1 16497964 rs111586652 A AG 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:424:50,208:0,0:162 +1 16498048 rs11588341 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:498:104,113:123,143:731 +1 16499308 rs7528166 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:478:0,197:85,282:412 +1 16499605 rs1497407 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:515:115,109:156,134:591 +1 16499885 rs6674349 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,283:48,318:356 +1 16499913 rs6661012 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:584:131,150:143,166:511 +1 16500373 rs59476213 G GA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:512:0,241:37,37:355 +1 16500523 rs7519043 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:638:146,155:168,175:720 +1 16500985 rs7532060 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:480:0,210:74,284:332 +1 16501350 rs6603886 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:556:1,233:106,330:491 +1 16501436 rs6603887 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,246:78,310:433 +1 16501649 rs7529475 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:523:0,239:53,290:321 +1 16501753 rs7542770 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,240:79,315:384 +1 16502256 rs6603888 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:591:131,125:172,160:908 +1 16502623 rs6678720 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:531:0,256:30,279:296 +1 16504381 rs7538833 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:129,130:161,147:712 +1 16504549 rs7538966 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:620:137,131:174,171:946 +1 16505304 rs6688638 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:16505304_T_C:581:124,132:162,162:696 +1 16505320 rs1497406 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:16505304_T_C:626:140,148:166,173:1223 +1 16505908 rs4661718 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:546:139,128:149,136:814 +1 16506089 . T TTTA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:257:0,0:0,0:160 +1 16506092 . T A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:249:0,0:0,0:152 +1 16506095 . T A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:249:0,0:0,0:152 +1 16506260 rs6679761 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:523:126,117:144,128:344 +1 16507265 rs4336844 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:143,132:169,154:653 +1 16507384 rs4233540 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:135,117:174,148:905 +1 16507618 rs6677710 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:607:122,147:167,168:634 +1 16508059 rs12562207 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:515:93,115:93,115:718 +1 16508375 rs12057175 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:519:125,110:148,137:535 +1 16508534 rs12057222 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:546:102,110:156,173:1172 +1 16509029 rs1007887 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:135,123:169,140:670 +1 16509628 rs36042362 CA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:275:52,66:52,66:99 +1 16509671 rs7538216 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:554:167,159:89,95:1321 +1 16510139 rs10907282 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:478:99,115:124,139:573 +1 16510798 rs4537547 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:580:126,120:170,164:1379 +1 16510894 rs36086195 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:539:121,118:149,144:628 +1 16511539 rs924203 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:113,148:134,175:777 +1 16512310 rs140232916 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:133,131:145,147:398 +1 16512348 rs9700627 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:142,133:162,153:606 +1 16512391 rs55837406 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:626:149,127:185,146:545 +1 16512586 rs12078100 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:144,140:161,151:378 +1 16512920 rs9329465 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:147,117:168,146:586 +1 16513153 rs4661359 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:134,126:166,147:918 +1 16513746 rs11260929 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:539:100,113:130,150:745 +1 16513926 rs924204 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:116,120:144,143:618 +1 16514343 rs11260930 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:592:136,124:183,157:797 +1 16514369 rs4661721 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:579:126,133:162,158:563 +1 16515060 rs35019794 C CT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:655:0,281:104,104:486 +1 16515805 rs6656611 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:514:121,111:144,136:976 +1 16515879 rs12740413 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:115,121:58,63:1467 +1 16515903 rs35201497 TG T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:489:0,206:79,79:401 +1 16516110 rs6671165 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:478:92,106:126,146:898 +1 16516303 . T TA 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:238:8,48,50:0,33,50:242 +1 16516303 . TAA T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:238:8,48,50:0,33,50:242 +1 16516527 rs6704422 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:522:0,228:71,297:372 +1 16516585 rs6690317 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:486:113,114:132,127:719 +1 16516859 rs6683033 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,258:69,320:407 +1 16517178 rs10218517 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:557:1,234:55,269:410 +1 16517465 rs2132852 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:484:0,226:52,265:368 +1 16517662 rs12734223 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:522:120,112:150,143:673 +1 16517721 rs10796436 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:485:1,216:59,274:347 +1 16518027 rs12023672 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:509:0,236:45,276:335 +1 16518170 rs12757462 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:465:0,226:0,216:289 +1 16518284 rs12726942 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:415:0,172:71,243:360 +1 16518385 rs56139236 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16518385_T_C:413:0,191:56,56:345 +1 16518386 rs55942310 A T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16518385_T_C:413:0,191:56,56:345 +1 16518387 rs111326960 CCAGG C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16518385_T_C:411:0,189:56,56:345 +1 16518402 rs6702753 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16518385_T_C:471:0,204:69,69:451 +1 16518455 rs6702773 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:455:0,196:72,262:395 +1 16518512 rs6702866 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:16518512_A_C:464:0,205:62,267:333 +1 16518513 rs6662702 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:16518512_A_C:464:0,205:62,267:333 +1 16518583 rs6689594 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,268:37,303:294 +1 16518716 rs6703096 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:634:0,311:0,295:298 +1 16518748 rs12024558 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:644:160,150:154,139:622 +1 16518824 rs72636554 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:589:137,151:131,149:343 +1 16518866 rs6697459 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:532:0,269:0,256:304 +1 16519194 rs143320143 TATAC T 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:16519161_A_G:534:0,279:0,0:148 +1 16519217 rs11801542 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:16519161_A_G:566:1,283:0,0:247 +1 16519443 rs10907284 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:711:8,368:0,360:217 +1 16520607 rs10907285 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:525:85,281:4,200:324 +1 16521206 . AGAAAGAAAGAAA G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:122:0,0:0,0:160 +1 16521228 rs6661886 A C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:16521203_GA_G:375:1,185:0,0:244 +1 16521236 rs72636555 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:385:92,94:0,0:254 +1 16521295 rs141136116 GAGAAAGAAAAGA G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16521295_GAGAAAGAAAAGA_G:285:0,146:0,0:248 +1 16521330 rs145185213 G GGGAA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16521295_GAGAAAGAAAAGA_G:327:0,151:0,0:243 +1 16521349 rs6603889 T C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16521295_GAGAAAGAAAAGA_G:337:0,141:0,0:259 +1 16521431 . T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:16521431_T_G:405:88,77:115,101:771 +1 16521438 rs151327740 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:16521431_T_G:412:86,79:113,110:739 +1 16521556 rs6672958 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:16521556_G_A:377:0,142:42,184:316 +1 16521941 rs10796438 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,291:45,306:406 +1 16521998 rs6603891 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,273:77,339:431 +1 16522269 rs1985166 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:796:0,384:73,425:477 +1 16523672 rs10907286 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:518:116,111:152,136:665 +1 16523767 rs221029 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:538:110,106:167,156:1175 +1 16526194 rs11260936 G C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:445:88,101:127,123:493 +1 16526529 rs221035 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:437:93,93:126,124:1081 +1 16527165 rs7527137 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:668:148,149:183,179:797 +1 16528218 rs6676143 G T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:103,104:138,121:720 +1 16528600 rs3818162 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:113,110:143,145:994 +1 16528843 rs1693540 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:515:105,118:105,118:346 +1 16529865 rs221044 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:506:0,215:99,287:488 +1 16530049 rs221045 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:490:114,115:127,134:924 +1 16530364 rs221047 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:736:174,154:152,135:1598 +1 16533022 rs221052 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:304:50,44:38,29:791 +1 16533444 . T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:489:114,111:17,10:340 +1 16533830 rs71574166 AATTC A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:494:127,115:7,12:345 +1 16535804 rs221061 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:754:162,179:206,212:1067 +1 16537289 rs221063 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:141,145:181,197:947 +1 16537752 rs2132851 C G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:647:126,161:43,38:848 +1 16537781 rs3030196 CTT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:113,146:30,35:674 +1 16538272 rs11260703 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:618:140,127:183,162:1057 +1 16539313 rs1874630 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:128,111:159,150:845 +1 16539577 rs12751725 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:124,127:171,175:1394 +1 16539813 rs12728772 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:125,127:151,158:838 +1 16541776 rs72636568 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:434:97,106:101,117:559 +1 16541962 rs3738630 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:167,179:124,124:1017 +1 16542835 rs2273314 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:542:120,117:158,147:937 +1 16542876 rs2273313 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:534:123,117:141,158:755 +1 16542937 rs2273312 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:109,95:159,152:1152 +1 16543175 rs221024 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:548:0,249:85,307:500 +1 16543346 rs7543273 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:624:151,147:172,154:802 +1 16544382 rs12740149 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:442:97,101:117,121:711 +1 16546514 rs35225769 T TC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:564:0,240:89,89:464 +1 16546966 rs885795 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,272:89,341:503 +1 16549408 rs202136061 C CTTAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:331:88,75:0,0:259 +1 16549532 rs12058596 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:624:13,316:0,303:212 +1 16549615 rs12057308 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:529:0,250:35,283:296 +1 16550716 rs12118582 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:575:147,95:179,137:1110 +1 16551373 rs35649921 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,259:95,334:451 +1 16551507 rs16849195 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:584:0,246:110,340:518 +1 16551648 rs66954830 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,238:101,331:507 +1 16551859 rs34110739 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:422:50,240:0,190:316 +1 16552416 rs4360516 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:516:0,236:61,282:360 +1 16552772 rs12119764 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:417:0,196:38,228:307 +1 16553570 rs11578280 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:543:39,290:0,251:309 +1 16553833 rs11578807 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,269:51,320:316 +1 16555105 rs41269189 C T 50 PASS platforms=4;platformnames=CG,10X,Illumina,Solid;datasets=4;datasetnames=CGnormal,10XChromium,HiSeqPE300x,SolidSE75bp;callsets=5;callsetnames=CGnormal,10XGATKhaplo,HiSeqPE300xGATK,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:410:0,139:81,81:399 +1 16555566 rs1985782 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:615:0,267:76,340:395 +1 16555882 rs12748676 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,239:60,287:317 +1 16556623 rs6693819 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:16556623_C_T:522:0,223:87,302:453 +1 16556647 rs12724988 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:16556623_C_T:482:0,211:64,275:355 +1 16556786 rs34966560 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:479:0,217:70,270:412 +1 16557390 rs3795745 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:504:0,230:46,273:327 +1 16557691 rs11260709 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:435:0,175:53,53:327 +1 16559541 rs3738631 C G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:725:0,275:52,310:450 +1 16561014 rs2863843 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16561014_C_T:664:0,305:78,368:335 +1 16561028 rs2863844 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16561014_C_T:662:0,309:65,363:307 +1 16561179 rs2863845 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:629:1,288:70,345:404 +1 16562968 rs6603850 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:578:1,261:71,318:412 +1 16563563 rs56329264 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:496:119,124:0,0:366 +1 16563635 rs717863 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:449:0,174:44,44:367 +1 16564629 rs12753224 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:141,144:158,162:791 +1 16564863 rs11260710 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,216:79,295:410 +1 16567622 rs6672616 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:412:0,135:79,79:456 +1 16568613 rs4661727 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:605:0,270:68,338:366 +1 16569663 rs964042 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,252:64,302:409 +1 16569760 rs964041 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,254:79,324:432 +1 16570184 rs127712 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,246:98,342:433 +1 16570839 rs6683278 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:653:0,288:91,375:448 +1 16573712 rs6675923 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:551:127,114:159,148:923 +1 16574040 rs3832002 TC T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:630:0,285:75,75:396 +1 16574316 rs3738632 T C 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:612:62,350:0,274:379 +1 16574382 rs6693451 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:716:0,339:78,383:517 +1 16575030 rs17369676 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:659:0,293:105,373:559 +1 16576836 rs7536390 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:642:0,312:48,341:382 +1 16577908 rs12069239 G C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:834:0,254:59,287:470 +1 16579070 rs4661729 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:731:0,339:113,404:635 +1 16581832 rs35405854 CT C 50 PASS platforms=2;platformnames=Illumina,Solid;datasets=2;datasetnames=HiSeqPE300x,SolidSE75bp;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,10,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:393:2,180:2,177:108 +1 16581955 rs2014776 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:633:0,284:66,345:368 +1 16582053 rs34277220 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:628:141,143:170,172:898 +1 16582686 rs1008529 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:607:0,278:89,346:499 +1 16583030 rs3830890 C CA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:650:0,293:69,69:369 +1 16583478 rs12136429 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:714:0,327:93,391:536 +1 16584188 rs11585312 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:707:1,287:117,400:403 +1 16584858 rs5772663 CT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:492:33,251:1,219:162 +1 16585818 rs10489599 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:803:0,369:81,441:459 +1 16585993 rs35312617 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:657:1,295:81,361:334 +1 16586033 rs12748713 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:584:127,141:149,165:578 +1 16586704 rs35806590 CT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:388:22,178:1,157:132 +1 16588240 rs9782941 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:596:51,324:0,0:418 +1 16588323 rs9782957 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,226:53,279:323 +1 16591072 rs6698317 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:623:0,291:72,336:453 +1 16592275 rs35779272 TA T 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:483:4,231:4,231:99 +1 16592683 rs11260714 T A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:725:2,341:2,341:198 +1 16593338 rs12736225 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:705:0,323:83,386:490 +1 16593804 rs12747885 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:873:0,410:92,475:534 +1 16593928 rs12084628 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:779:0,371:87,423:548 +1 16594034 rs12136224 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:703:0,328:77,385:468 +1 16594055 rs10907222 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:723:0,333:83,397:489 +1 16594790 rs718178 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:16594790_T_C:672:0,307:94,378:471 +1 16594810 rs6672772 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:16594790_T_C:635:0,282:99,363:517 +1 16596558 rs34713890 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:529:0,238:70,300:399 +1 16596721 rs61769822 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:494:0,232:51,260:392 +1 16596929 rs67829531 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:528:0,235:71,71:464 +1 16597753 rs58332822 GGTGTGT G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:223:0,103:0,103:198 +1 16598285 rs61769824 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:496:0,225:69,275:365 +1 16598911 rs12723303 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:477:0,214:52,266:305 +1 16599490 rs4661360 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:653:0,304:80,358:488 +1 16600477 rs6665360 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:719:1,326:98,395:544 +1 16600681 rs6680049 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,271:0,268:254 +1 16600877 rs11587155 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:689:0,319:64,376:381 +1 16601253 rs34674980 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:447:0,196:41,41:347 +1 16601420 rs2047368 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:577:74,316:0,238:356 +1 16601621 rs2047369 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:698:0,333:67,371:459 +1 16601970 rs12752053 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,256:79,329:413 +1 16602450 rs12142913 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:601:0,285:0,285:268 +1 16602602 rs4661732 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:636:0,282:77,356:411 +1 16602933 rs4661733 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:594:1,236:95,95:546 +1 16603144 rs12144597 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:692:1,322:80,372:481 +1 16603636 rs2983163 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:703:1,333:69,380:447 +1 16604290 rs12754842 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:651:0,288:37,325:273 +1 16604697 . CA C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:130,97:34,31:850 +1 16607871 rs11590217 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:652:0,306:52,341:394 +1 16607969 rs11260715 T G 50 PASS platforms=2;platformnames=Illumina,Solid;datasets=2;datasetnames=HiSeqPE300x,SolidSE75bp;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,10,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:436:2,216:2,212:111 +1 16608715 rs58853820 CT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:418:9,197:9,197:99 +1 16609059 rs12756592 A C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:16609032_TAA_T:577:0,242:94,94:461 +1 16609246 rs1262641 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:519:0,238:33,271:271 +1 16609274 rs1262640 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:16609274_G_A:555:0,256:48,304:292 +1 16609281 rs1262639 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:16609274_G_A:550:0,249:49,298:312 +1 16610437 rs11260717 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:713:0,324:83,390:417 +1 16611096 rs2983162 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:583:0,271:43,314:299 +1 16611246 rs12734151 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,249:56,305:355 +1 16611751 rs72638103 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:167,159:115,108:1219 +1 16613298 rs4661734 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:646:0,286:113,370:587 +1 16613660 rs12120676 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:635:0,297:81,348:498 +1 16614947 rs6661454 A T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:536:0,216:0,216:198 +1 16616139 rs34247809 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,277:67,67:391 +1 16617812 rs11260718 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:672:0,314:57,352:404 +1 16617911 rs11260719 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:676:0,306:63,369:370 +1 16618207 rs12118075 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:671:0,296:73,364:346 +1 16618332 rs1934490 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:653:0,282:110,390:467 +1 16618442 rs1934491 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:700:0,329:44,373:308 +1 16619350 rs10489598 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:696:0,330:68,370:465 +1 16619627 rs7518158 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:792:0,355:116,459:562 +1 16619851 rs12117111 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:629:0,287:53,337:348 +1 16620160 rs2994142 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:676:0,303:85,377:456 +1 16620589 rs11260720 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:696:0,312:93,395:404 +1 16621183 rs1007150 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:764:0,350:83,419:461 +1 16621234 rs12353958 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:891:191,170:206,186:842 +1 16621948 rs1262638 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:728:0,330:63,393:358 +1 16622546 rs10489597 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:673:0,316:66,354:446 +1 16623658 rs12724301 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:270:0,118:0,0:240 +1 16625512 rs2983159 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:714:0,303:116,419:350 +1 16625884 rs4661735 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:655:0,305:65,357:403 +1 16626278 rs6603852 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:637:0,279:78,357:408 +1 16626440 rs6603853 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:647:1,286:85,361:454 +1 16627968 rs34545443 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,240:49,289:336 +1 16628107 rs12068487 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:432:0,165:42,207:291 +1 16628920 rs12746267 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:675:0,308:75,372:420 +1 16629166 rs12121061 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:624:0,261:117,378:477 +1 16630273 rs6674552 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,233:47,280:319 +1 16633589 rs9439615 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:16633589_A_G:551:0,250:50,300:336 +1 16633606 rs11582646 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:16633589_A_G:546:0,243:58,301:351 +1 16634683 rs34692029 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:708:0,328:64,384:395 +1 16634923 rs11583228 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:507:1,214:47,251:354 +1 16636043 rs12132841 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:725:0,346:74,389:477 +1 16636414 rs12122897 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:653:0,300:68,368:372 +1 16636443 rs12121375 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:663:4,310:42,348:283 +1 16639670 rs67873210 CA C 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:696:0,300:89,89:341 +1 16639819 rs147117901 CAAAGAAAGAAAG C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:464:0,268:0,0:248 +1 16640072 rs11260725 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,267:69,311:461 +1 16640249 rs12121880 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:751:0,354:67,397:392 +1 16641236 rs55903004 G T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:583:0,227:93,93:471 +1 16641513 rs67963098 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:870:0,399:103,469:569 +1 16642790 rs11805249 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:691:0,310:75,365:435 +1 16642849 rs11804252 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:650:1,294:70,354:401 +1 16643056 rs11583267 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:429:0,184:60,242:354 +1 16643731 rs10796411 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:539:1,235:63,297:365 +1 16643832 rs11581041 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:622:0,269:79,344:405 +1 16643907 rs34170464 C CAACAAACA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:417:0,216:0,0:248 +1 16644096 rs60388256 GCAAA G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:473:0,247:0,0:252 +1 16644315 rs67426335 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:585:0,278:0,278:259 +1 16644928 rs60700519 G GT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:798:0,368:68,68:415 +1 16645277 rs4661736 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:536:0,260:46,278:392 +1 16645595 rs4661737 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:695:0,327:66,375:426 +1 16648188 rs143212893 GT G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:424:0,185:0,185:99 +1 16649891 rs9919132 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:642:1,285:62,346:330 +1 16649959 rs9919320 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:697:0,293:94,385:363 +1 16650622 rs143216428 CAAATGA C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:659:0,317:57,57:427 +1 16651580 rs9919126 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:621:0,274:82,353:396 +1 16652219 rs12131942 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:508:0,243:36,270:324 +1 16652333 rs12129821 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:521:0,238:47,47:308 +1 16653299 rs11260727 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:736:153,167:202,210:1017 +1 16654611 rs12134924 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:762:0,347:96,420:499 +1 16656853 rs36055269 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:500:0,237:28,28:318 +1 16657622 rs61769855 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:16657622_T_C:514:41,275:0,234:311 +1 16657636 rs34753342 T C 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:16657622_T_C:478:13,244:0,231:232 +1 16657917 rs201268739 AAAT A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:422:0,230:0,230:198 +1 16657973 rs72637832 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:702:49,373:1,325:300 +1 16658085 rs6687157 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:594:0,288:0,288:261 +1 16659113 rs4661738 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,236:40,274:315 +1 16659952 rs12078435 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:16659941_C_CCG:446:62,65:65,50:1168 +1 16660074 rs11260729 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:740:0,322:113,419:530 +1 16662832 rs4661361 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,235:91,315:456 +1 16663436 rs12141079 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:636:0,293:50,343:343 +1 16663715 rs56237001 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:701:0,318:91,384:514 +1 16664100 rs56275441 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,237:59,59:389 +1 16664755 rs146432170 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:570:2,255:45,45:344 +1 16666174 rs111400054 T TG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:757:0,350:72,72:460 +1 16666283 rs11260730 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:732:0,347:66,393:437 +1 16666429 rs4661739 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:634:1,294:51,344:326 +1 16666746 rs12138708 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:749:0,339:64,403:328 +1 16666956 rs7520404 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:602:0,271:57,328:332 +1 16667541 rs11260731 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:722:0,364:35,368:383 +1 16668052 rs9793421 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:501:1,205:48,252:317 +1 16668371 rs680202 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:577:0,269:0,269:236 +1 16668467 rs56035222 CA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:297:1,121:1,121:99 +1 16668891 rs35544838 CA C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:205:2,66:2,66:198 +1 16668933 rs11260732 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:456:120,270:0,146:356 +1 16669884 rs56298793 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:539:0,248:45,45:349 +1 16670728 rs12739842 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:619:0,288:31,319:286 +1 16671218 rs11587039 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:753:0,359:56,412:369 +1 16672048 . T TA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:682:154,147:32,22:647 +1 16672840 rs6681243 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:702:0,320:89,384:509 +1 16672896 rs6603854 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:644:0,293:82,358:448 +1 16673651 rs61770561 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:749:0,359:51,397:357 +1 16674099 rs7538485 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,299:41,334:329 +1 16675022 rs4661740 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,256:82,336:427 +1 16676078 rs72638015 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:812:0,382:63,436:390 +1 16676380 rs11260733 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:791:0,341:0,335:550 +1 16676444 rs55687829 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:834:186,189:232,226:1186 +1 16678564 rs76697647 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:628:0,291:0,289:321 +1 16678581 rs112982587 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,284:0,282:259 +1 16679075 rs11260734 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:508:0,211:66,66:361 +1 16679847 rs11588920 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:399:0,159:78,233:387 +1 16680735 rs11576502 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,268:49,317:330 +1 16681492 rs12116813 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:544:0,228:76,287:442 +1 16681980 rs12116960 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:554:1,236:56,291:334 +1 16682128 rs11260735 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:737:0,337:75,399:373 +1 16682731 rs4495694 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:624:0,283:46,325:323 +1 16683789 rs7515258 T C 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:634:11,318:0,307:215 +1 16684089 rs7355088 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:571:4,253:42,291:301 +1 16684247 rs7355194 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:570:1,270:1,264:260 +1 16684877 rs11260737 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16684877_C_T:595:0,275:57,328:362 +1 16684893 rs10796412 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16684877_C_T:573:47,313:0,266:325 +1 16685621 rs10907224 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:609:1,267:55,321:316 +1 16685930 rs4661741 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:16685930_A_C:523:1,234:1,234:307 +1 16685941 rs4661362 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:16685930_A_C:495:1,236:1,236:159 +1 16686157 rs4661363 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:675:0,312:51,360:337 +1 16686287 rs10796413 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:643:0,287:78,353:449 +1 16686794 rs9629265 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:690:1,332:67,361:476 +1 16687416 rs6603857 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,259:0,0:304 +1 16688760 rs6699652 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:471:0,192:0,0:326 +1 16690370 rs4661742 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,233:31,264:282 +1 16690847 rs6696951 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,237:53,290:350 +1 16691023 rs6663056 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:655:0,308:78,359:489 +1 16692050 rs12064873 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:597:0,286:42,321:314 +1 16692332 rs55774241 GT G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:419:39,213:0,0:369 +1 16692566 rs55915222 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:522:0,215:34,249:289 +1 16692978 . C CG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,261:45,45:375 +1 16694978 rs142324610 GGTT G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:654:1,294:88,88:505 +1 16696957 rs12123011 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,260:56,313:370 +1 16704736 rs55963731 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:163,157:0,0:912 +1 16708999 rs72638025 T C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:458:88,118:88,118:198 +1 16709082 rs112822695 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:579:128,117:157,145:494 +1 16709434 rs6603860 T C 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:494:38,260:0,222:216 +1 16714984 rs4661744 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:612:0,278:69,334:432 +1 16715466 rs12138174 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,251:73,311:337 +1 16716374 rs612727 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:667:0,304:86,369:483 +1 16717120 rs12131558 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:704:0,315:95,401:467 +1 16720112 rs10907225 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,255:66,321:326 +1 16725330 rs41307763 G A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:127,135:158,169:1080 +1 16728339 rs4661745 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:626:1,288:77,338:433 +1 16731646 rs3106498 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:542:0,232:87,309:448 +1 16732026 rs4338348 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:418:0,141:0,0:367 +1 16732192 rs17453064 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:519:0,230:61,289:373 +1 16736132 rs4661746 T C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:567:0,220:77,291:432 +1 16736546 rs10907226 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,233:65,292:356 +1 16736738 rs11584737 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,264:81,332:349 +1 16738050 rs10907227 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:470:0,207:55,262:310 +1 16738363 rs12757664 C G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:361:0,140:64,64:466 +1 16738755 rs12135288 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:487:0,226:51,263:366 +1 16739391 rs7515143 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:16739391_G_A:635:0,294:51,345:316 +1 16739393 rs2994138 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:16739391_G_A:634:0,293:51,344:316 +1 16739484 rs113942728 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:119,124:140,161:563 +1 16739638 rs71574182 T TAGAAC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,268:45,45:316 +1 16739907 rs2670494 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:658:0,312:57,346:423 +1 16739953 rs4661747 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:654:0,307:61,347:397 +1 16740035 rs4661748 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:679:0,309:75,372:427 +1 16740653 rs11260751 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:593:0,267:41,308:314 +1 16742820 rs11260752 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:514:0,239:48,278:340 +1 16743342 rs12145688 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,262:76,329:415 +1 16743398 rs12145711 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:596:0,280:43,323:298 +1 16743768 rs12143456 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:469:71,260:5,181:300 +1 16745304 rs12118090 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,275:60,329:370 +1 16746888 rs11260753 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:16746888_A_G:474:0,198:85,280:515 +1 16746901 rs12141069 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:16746888_A_G:449:92,103:118,129:708 +1 16747615 rs12139049 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:450:2,185:89,258:459 +1 16747700 rs12144448 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:447:90,92:132,130:1069 +1 16755873 rs10907228 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,282:46,324:328 +1 16760037 rs11260757 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:621:0,270:100,357:511 +1 16761195 rs56367910 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:758:195,165:212,182:921 +1 16761912 rs72638040 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:128,119:171,151:845 +1 16761962 rs12064418 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:127,104:159,137:752 +1 16763288 rs201207729 A AC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:126,170:27,38:802 +1 16763879 rs111697755 AC A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:575:143,134:27,25:887 +1 16764703 rs3901404 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:106,115:149,151:876 +1 16764807 rs7516355 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:587:124,113:33,21:737 +1 16765184 rs7530190 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:674:208,175:164,131:1004 +1 16766769 rs72638043 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:475:116,94:149,115:823 +1 16767506 rs2783371 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:488:0,217:67,274:401 +1 16769949 rs12064256 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:686:170,161:176,176:607 +1 16770784 rs7532070 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:115,109:145,136:715 +1 16771646 rs12071176 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:574:129,131:162,153:903 +1 16772641 rs821171 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:635:134,168:149,181:404 +1 16773387 rs820999 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:546:126,109:153,152:681 +1 16773557 rs57135732 GA G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:385:20,172:1,153:127 +1 16773808 rs58755894 G GCTT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,269:64,64:442 +1 16773880 rs821000 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:583:0,271:74,321:381 +1 16773905 rs72638050 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:569:137,126:160,145:841 +1 16776804 rs279779 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:101,82:144,139:1274 +1 16776868 rs279780 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:139,120:161,130:813 +1 16777812 rs279781 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:665:156,139:170,161:954 +1 16778265 rs279782 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:644:132,153:42,42:1064 +1 16780060 rs279784 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:131,127:163,157:765 +1 16780108 rs279785 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:120,109:151,129:501 +1 16780624 rs6679656 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:672:149,153:23,17:494 +1 16781026 rs279017 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:674:0,300:91,391:377 +1 16781447 rs279786 A G 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=5;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:737:103,433:0,317:576 +1 16781997 rs72638053 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:133,143:191,191:1190 +1 16782692 rs279018 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,235:95,327:414 +1 16782824 rs279787 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:131,97:166,131:1059 +1 16782995 rs279788 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:134,120:157,145:919 +1 16784321 rs279021 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:432:0,194:0,187:287 +1 16785564 rs11543230 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:123,141:166,163:1132 +1 16786087 rs279022 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:583:1,277:47,318:321 +1 16786636 rs1746722 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:611:146,132:172,154:747 +1 16786928 rs279024 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:494:0,217:76,279:447 +1 16788015 rs698865 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:571:109,138:145,180:892 +1 16788515 rs279025 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:620:0,284:62,341:379 +1 16790084 rs279026 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:369:44,202:0,158:298 +1 16790336 rs279027 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:425:1,194:37,230:299 +1 16790901 rs279028 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,269:64,317:406 +1 16791286 rs698867 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:485:100,94:132,147:725 +1 16791363 rs140379747 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:489:103,107:138,131:649 +1 16791384 rs157127 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:494:0,210:81,287:603 +1 16791399 rs72638059 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:527:104,115:146,159:1278 +1 16793220 rs157129 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:670:0,313:63,355:430 +1 16793399 rs157130 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:537:0,209:45,251:325 +1 17281003 rs2076606 T C 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:160,133:0,0:620 +1 17281759 rs151046905 C CG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:460:105,110:11,14:417 +1 17282425 rs2143808 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:539:100,123:148,169:1094 +1 17282573 rs2273114 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:695:132,135:156,171:1005 +1 17284434 rs35954331 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:132,135:34,32:993 +1 17284493 rs66678901 CT C 50 PASS platforms=2;platformnames=Illumina,Solid;datasets=2;datasetnames=HiSeqPE300x,SolidPE50x50bp;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidPE50x50GATKHC;datasetsmissingcall=.,10,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1|1:17284493_CT_C:492:0,253:0,0:154 +1 17284498 rs76074825 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17284493_CT_C:518:0,255:0,0:341 +1 17285022 rs12097969 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:136,123:147,151:485 +1 17285298 rs41300134 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:467:106,92:18,15:476 +1 17285464 rs56013652 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:137,133:161,162:974 +1 17286210 rs4920355 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:624:136,144:172,171:1077 +1 17286503 rs28624493 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:130,131:165,166:852 +1 17286836 rs56077287 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:130,124:160,141:730 +1 17287414 rs2273113 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:494:112,111:133,132:461 +1 17287639 rs2273112 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:666:138,148:185,182:763 +1 17288566 rs12088911 G T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:550:177,135:116,114:246 +1 17290058 rs6696928 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:516:0,235:53,286:341 +1 17290299 rs4920568 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:535:178,104:126,72:371 +1 17291129 rs55709923 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:120,124:141,137:370 +1 17291861 rs7542565 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:482:0,216:65,270:363 +1 17292571 rs72639732 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:510:90,91:128,142:970 +1 17293660 rs12097163 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:126,132:154,168:784 +1 17293892 rs12757283 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:438:124,112:104,97:361 +1 17295679 rs4920574 T C 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:553:0,193:71,264:430 +1 17297289 rs9435656 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_IonExomeTVC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:617:114,105:161,135:740 +1 17297587 rs2281376 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:577:137,113:46,44:1244 +1 17297705 . A AGT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:270:2,48,82:2,48,82:99 +1 17297705 . AGTGTGTGT A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:270:2,48,82:2,48,82:99 +1 17298496 rs7513616 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:130,98:158,117:534 +1 17299014 rs6661019 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:460:9,178:9,178:296 +1 17299727 rs11203277 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:501:108,112:143,140:916 +1 17301672 rs761423 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:637:145,147:174,178:1340 +1 17301780 rs761422 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:662:134,111:165,138:883 +1 17303589 rs2235932 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:486:0,223:59,277:365 +1 17303792 rs4920588 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:495:1,200:90,281:444 +1 17305820 rs9435729 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:483:0,222:47,263:321 +1 17305903 rs9435730 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:517:0,233:66,292:389 +1 17306029 rs9435731 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:521:0,241:0,232:289 +1 17306591 rs189266865 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:380:85,98:0,0:272 +1 17306595 rs2284748 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17306595_T_C:377:0,182:0,0:277 +1 17306596 rs2284747 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17306595_T_C:376:0,181:0,0:277 +1 17306675 rs2284746 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:343:0,153:0,153:259 +1 17306870 rs55750792 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:432:2,195:42,230:297 +1 17308254 rs9435733 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:522:0,240:73,286:485 +1 17309718 rs3754512 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:496:0,223:50,268:343 +1 17310019 rs3754511 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,243:63,296:361 +1 17310802 rs10887989 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:435:12,175:7,151:2496 +1 17311190 rs9435734 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:542:0,251:53,296:354 +1 17311882 rs6682671 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:518:0,231:55,283:352 +1 17312592 rs15786 G A 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:641:117,109:151,132:542 +1 17312743 rs3170740 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_IonExomeTVC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:459:0,164:46,208:338 +1 17313157 rs2076605 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:427:0,189:53,237:327 +1 17313343 rs9435659 G A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,212:57,265:383 +1 17313654 rs761421 C T 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,202:65,264:397 +1 17314942 rs9435662 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,226:49,269:371 +1 17315425 rs4920605 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:553:1,248:43,290:308 +1 17319011 rs2076603 G A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:624:1,237:49,280:365 +1 17319287 rs4920608 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:622:0,278:91,349:487 +1 17320692 . C CATTT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:398:112,95:0,0:245 +1 17323449 rs9435736 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:393:0,174:44,216:313 +1 17326131 rs11583923 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,248:41,286:311 +1 17326171 rs11583148 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,239:40,279:305 +1 17327429 rs7550758 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,281:49,330:325 +1 17328200 rs6657613 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:564:0,251:74,314:422 +1 17336521 rs926702 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:428:0,189:59,248:349 +1 17340269 rs60662249 A AAAAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:265:62,72:0,0:245 +1 17341146 rs735258 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:510:0,214:73,287:369 +1 17341752 rs2647167 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:593:0,250:96,346:336 +1 17342038 rs67235606 GTAAAT G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:513:0,237:64,64:441 +1 17342260 rs2746478 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:513:0,227:58,279:356 +1 17342368 rs67146530 G GT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:487:0,206:79,79:460 +1 17342659 rs9435672 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:472:0,210:76,274:428 +1 17342735 rs2647166 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:471:0,221:45,251:367 +1 17342924 rs9435739 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,260:82,321:456 +1 17343904 rs9435741 A C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:611:1,248:91,91:495 +1 17345073 rs35394060 G GC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,263:51,51:352 +1 17345905 rs2871775 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:797:1,354:97,433:491 +1 17346404 rs2746476 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:622:75,359:0,284:334 +1 17347956 rs2746475 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:620:0,251:124,375:416 +1 17349798 rs978528 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:655:0,298:82,366:426 +1 17350238 rs2746471 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:716:0,336:73,384:419 +1 17350931 rs12142244 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17350931_G_A:577:52,319:0,265:342 +1 17350943 rs6699999 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17350931_G_A:559:41,308:0,267:276 +1 17351905 rs35841405 CT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:371:2,164:2,164:99 +1 17353988 rs11203282 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,247:105,344:480 +1 17355387 rs2746469 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:611:0,287:74,337:427 +1 17355925 rs34853585 AT A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:356:28,184:1,157:128 +1 17357366 rs12143126 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:509:0,191:93,284:409 +1 17357958 rs2746466 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:647:0,291:77,357:420 +1 17359386 rs10887990 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:654:0,301:95,372:539 +1 17359676 rs1022580 C A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_IonExomeTVC_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:663:0,284:73,339:452 +1 17360614 rs2647160 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:748:0,340:85,85:477 +1 17362705 rs11579925 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:727:0,340:61,390:385 +1 17362859 rs10788650 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:648:0,310:40,348:305 +1 17363005 rs2647157 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:681:0,317:54,362:358 +1 17365733 rs2179793 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:717:0,326:65,391:352 +1 17366833 rs2647155 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:707:0,328:79,387:453 +1 17368052 rs12737199 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:541:2,251:39,285:305 +1 17369270 rs35897475 C CAA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:476:0,230:0,0:256 +1 17369315 rs7517920 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:709:96,411:0,0:423 +1 17369688 rs9435676 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:473:0,218:49,267:305 +1 17369738 rs12747579 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,242:75,305:415 +1 17369952 rs11203284 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:522:0,240:48,279:344 +1 17370120 rs11203285 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:596:0,274:73,328:447 +1 17370179 rs2179792 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:593:0,275:82,336:374 +1 17370213 rs10887992 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,254:41,277:359 +1 17370241 rs10887993 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:585:0,277:52,316:382 +1 17370575 rs34472779 AT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:646:0,297:43,43:383 +1 17370797 rs11203286 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:649:0,273:0,264:373 +1 17371152 rs12073028 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:663:1,302:73,363:418 +1 17371494 rs9435745 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:657:0,308:66,350:425 +1 17371685 rs732679 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:686:1,329:76,360:531 +1 17371755 rs10887994 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:579:0,266:69,328:399 +1 17372117 rs9435746 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:665:99,390:0,281:299 +1 17372397 rs11203287 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:539:1,243:72,298:433 +1 17372467 rs9435747 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,262:81,336:421 +1 17372511 rs11582579 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:651:0,293:90,367:490 +1 17372622 rs6690934 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:727:0,332:98,406:495 +1 17372849 rs35298846 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:572:3,257:42,42:332 +1 17373205 rs6690919 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:733:76,412:0,336:343 +1 17373317 rs6691029 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:631:0,288:52,340:345 +1 17373751 rs9435748 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:552:0,258:0,258:252 +1 17373959 rs9435749 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:537:0,242:44,286:311 +1 17374663 rs7536679 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:668:0,328:70,358:486 +1 17374688 rs7545499 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:718:1,325:111,405:570 +1 17374742 rs7545518 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:701:0,312:103,404:499 +1 17374958 rs35655194 CTG C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:510:0,239:35,35:352 +1 17375562 rs6698160 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17375562_A_G:653:0,314:34,343:290 +1 17375580 rs6701200 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17375562_A_G:672:0,324:29,353:275 +1 17375774 rs12122144 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:603:0,278:47,319:333 +1 17376296 rs1546925 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,263:81,341:407 +1 17376476 rs17466602 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:135,146:159,173:1173 +1 17376511 rs6700594 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:532:1,246:64,291:363 +1 17376790 rs2295060 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:731:0,329:0,324:393 +1 17376941 rs11203288 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:546:0,240:56,296:339 +1 17377409 rs2295059 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:735:0,355:72,389:432 +1 17377556 rs2295057 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:786:0,353:94,440:418 +1 17377956 rs11578903 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:611:0,281:79,340:469 +1 17378188 rs2746464 C G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:635:99,381:0,254:397 +1 17378228 rs6586496 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:663:76,368:1,285:374 +1 17378635 rs6586497 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:704:0,318:79,393:430 +1 17380497 rs2746462 G T 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:518:0,196:62,255:401 +1 17382306 rs2746460 A T 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=5;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:623:107,372:0,255:539 +1 17382500 rs3754509 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,233:90,317:400 +1 17382887 rs3754508 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:594:0,268:78,332:447 +1 17382989 rs3834105 A ACTC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:617:0,283:77,77:458 +1 17383439 rs72639756 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:708:158,161:194,195:1043 +1 17383746 rs6693063 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:17383746_A_C:575:0,248:74,322:379 +1 17383762 rs2647207 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:17383746_A_C:571:0,257:56,313:333 +1 17383880 rs2746459 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:585:0,266:0,266:347 +1 17386027 rs2746544 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:589:0,279:59,315:403 +1 17386104 rs12404121 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:636:0,305:56,339:397 +1 17386853 rs34410889 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:667:0,299:101,379:497 +1 17386880 rs2746543 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:646:0,287:92,364:491 +1 17387795 rs9325649 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:486:0,219:39,258:302 +1 17388568 rs2746542 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:622:0,289:70,340:434 +1 17388770 rs4920442 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:652:0,304:86,357:463 +1 17389580 rs11203290 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:702:0,326:63,382:332 +1 17389980 rs2746540 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:538:0,232:82,314:403 +1 17390453 rs12129188 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17390453_C_G:587:1,278:50,324:334 +1 17390456 rs2746538 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17390453_C_G:589:0,276:54,326:363 +1 17390494 rs12126285 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:612:0,287:61,340:278 +1 17390721 rs1007282 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:564:0,268:50,300:382 +1 17390953 rs5772743 CT C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:637:0,291:62,62:428 +1 17391001 rs2143811 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17391001_A_G:697:0,299:117,117:589 +1 17391014 rs3946080 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17391001_A_G:701:0,305:110,410:407 +1 17391025 rs1569754 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17391001_A_G:698:0,313:102,407:400 +1 17391319 rs2746537 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:762:0,355:72,409:362 +1 17392286 rs11203292 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:643:0,297:77,354:445 +1 17392683 rs1569753 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:511:0,157:116,116:512 +1 17392980 rs12134582 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,245:89,317:467 +1 17393748 rs55947769 AAC A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:349:0,131:35,35:326 +1 17394048 rs35058101 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,248:92,325:482 +1 17394374 rs12133334 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:684:0,305:104,385:497 +1 17394613 rs10157828 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17394613_T_C:522:0,236:63,295:357 +1 17394623 rs10157387 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17394613_T_C:532:0,244:61,297:348 +1 17395480 rs2076599 G A 50 PASS platforms=4;platformnames=Illumina,CG,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,188:52,223:334 +1 17395521 rs2076598 G A 50 PASS platforms=4;platformnames=Illumina,CG,Ion,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:636:1,222:87,297:401 +1 17396013 rs2076597 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:617:0,285:69,342:231 +1 17396146 rs371786654 ATG A 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=3;datasetnames=CGnormal,HiSeqPE300x,SolidSE75bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:611:0,284:58,58:367 +1 17396174 rs12760872 A G 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=3;datasetnames=CGnormal,HiSeqPE300x,SolidSE75bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:660:1,304:69,69:335 +1 17396408 rs6701620 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,278:58,317:286 +1 17396498 rs2076596 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:496:0,237:35,268:206 +1 17396703 rs2076595 T C 50 PASS platforms=4;platformnames=Illumina,CG,Ion,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:750:0,271:73,337:347 +1 17396876 rs2076594 C A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:517:0,234:65,290:279 +1 17397521 rs2092615 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:631:0,284:65,345:262 +1 17397704 rs2016693 A C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:589:0,266:73,334:317 +1 17398066 rs875219 G C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17398066_G_C:567:44,316:0,266:196 +1 17398069 rs875218 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17398066_G_C:562:37,311:0,268:192 +1 17398301 rs2647206 C G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17398301_C_G:490:0,218:61,276:280 +1 17398307 rs3818048 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17398301_C_G:491:0,220:61,277:262 +1 17398427 rs910234 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17398427_T_C:621:0,285:63,345:258 +1 17398429 rs910233 T G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17398427_T_C:621:0,285:63,344:258 +1 17398514 rs910232 C A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:576:0,255:100,334:417 +1 17398747 rs910231 A C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:560:1,267:38,299:214 +1 17398791 rs2311483 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:625:0,295:46,337:220 +1 17398849 rs3818042 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:726:0,337:88,398:318 +1 17399176 rs742798 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,280:76,342:336 +1 17399256 rs742797 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:679:0,310:90,368:429 +1 17399432 rs761428 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:564:0,255:57,305:261 +1 17399543 rs4448563 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:603:1,277:67,325:301 +1 17399804 rs12759261 G C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:481:0,216:38,254:188 +1 17399911 rs55941211 CA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:340:4,151:4,151:99 +1 17400061 rs6663485 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:658:0,292:85,371:447 +1 17400510 rs12134161 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:719:1,342:83,387:441 +1 17400526 rs12134165 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:664:1,314:73,358:463 +1 17400879 rs12741570 C A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:17400879_C_A:561:0,225:0,0:413 +1 17400966 rs2295055 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17400966_G_A:581:0,264:47,302:345 +1 17400975 rs2295054 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17400966_G_A:577:0,266:42,303:318 +1 17401094 rs2295053 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:506:0,226:0,211:481 +1 17401109 rs2295052 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:473:0,221:0,212:346 +1 17401137 rs2295051 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:467:0,223:0,223:264 +1 17401283 rs3818041 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:415:0,172:76,245:398 +1 17401740 rs3818040 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:536:0,241:74,296:432 +1 17401790 rs3818039 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:518:1,234:73,291:440 +1 17401805 rs3818038 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17401805_G_A:511:0,233:65,282:392 +1 17401815 rs3818037 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17401805_G_A:520:0,229:77,292:423 +1 17401848 rs3818036 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:523:0,246:47,276:373 +1 17402116 rs3818035 G T 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:550:0,226:64,277:422 +1 17402135 rs3818034 T C 50 PASS platforms=4;platformnames=Illumina,CG,Ion,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,221:79,288:355 +1 17402159 rs3818033 G A 50 PASS platforms=4;platformnames=Illumina,CG,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,213:59,262:297 +1 17402255 rs3818032 C T 50 PASS platforms=4;platformnames=Illumina,CG,Ion,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:1,230:41,266:251 +1 17402347 rs2647205 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,273:76,340:315 +1 17402418 rs3818031 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,277:28,300:194 +1 17402566 rs12138566 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:469:0,224:36,252:322 +1 17402627 rs12760512 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:499:0,226:45,271:312 +1 17402643 rs12755767 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:523:0,234:49,283:302 +1 17402763 rs12138461 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17402763_A_G:569:0,272:0,272:202 +1 17402764 rs12134154 G C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17402763_A_G:568:0,271:0,271:202 +1 17402795 rs7530720 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17402795_T_C:521:0,263:0,263:259 +1 17402796 rs80020716 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17402795_T_C:520:0,262:0,262:259 +1 17402801 rs144800424 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17402795_T_C:523:0,263:0,263:277 +1 17402802 rs7523483 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17402795_T_C:524:0,264:0,264:277 +1 17402883 rs2647202 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:525:58,295:1,238:232 +1 17403074 rs7514768 G T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:465:0,234:0,234:198 +1 17403103 rs7528156 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:571:66,318:1,251:467 +1 17403228 rs7523863 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:542:0,232:75,307:332 +1 17403278 rs2647201 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:488:0,220:60,280:360 +1 17403329 rs11587943 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:519:0,228:65,293:368 +1 17403405 rs11585299 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17403405_G_T:546:0,249:86,312:464 +1 17403407 rs11587487 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17403405_G_T:550:0,253:86,316:464 +1 17403485 rs35004594 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17403485_C_T:447:0,209:56,257:335 +1 17403486 rs2647200 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17403485_C_T:446:0,208:56,256:335 +1 17403488 rs35479817 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17403485_C_T:446:0,208:56,256:335 +1 17403901 rs2647198 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17403901_T_C:511:0,231:69,289:419 +1 17403908 rs2647197 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17403901_T_C:512:0,229:76,297:439 +1 17403931 rs2647196 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:500:0,206:99,305:373 +1 17403989 rs1980510 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:479:0,203:80,281:438 +1 17404006 rs1980509 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:504:0,202:109,311:467 +1 17404264 rs1980508 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:476:0,214:63,265:399 +1 17404802 rs35108553 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,251:0,251:345 +1 17404834 rs34438749 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:17404834_G_A:546:0,250:0,250:299 +1 17404836 rs35342519 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:17404834_G_A:547:0,251:0,251:299 +1 17404852 rs35210292 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:17404834_G_A:562:0,260:0,260:266 +1 17404907 rs34902742 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17404907_G_A:512:0,227:55,282:311 +1 17404921 rs9435751 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17404907_G_A:493:0,219:51,270:315 +1 17404981 rs10887996 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:511:0,227:38,265:290 +1 17405386 rs9435752 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:536:0,245:48,293:333 +1 17405428 rs9435753 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:584:1,269:47,315:319 +1 17405809 rs2057096 G A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:617:0,227:73,286:483 +1 17405916 rs2057095 C T 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1|1:17405916_C_T:583:0,200:84,271:489 +1 17405949 rs2057094 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17405916_C_T:451:0,201:71,257:434 +1 17406015 rs2057093 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17406015_C_T:497:0,222:72,281:421 +1 17406045 rs2057092 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17406015_C_T:544:0,224:112,322:533 +1 17406580 rs2647195 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:507:0,224:55,277:347 +1 17406876 rs2746529 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,240:67,298:397 +1 17406951 rs2647194 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:538:0,251:56,295:387 +1 17407207 rs2647192 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17407207_C_A:627:0,290:84,367:417 +1 17407209 rs3818024 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17407207_C_A:625:0,288:84,365:417 +1 17407214 rs2647191 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17407207_C_A:649:0,284:94,371:476 +1 17407323 rs2647190 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,265:79,332:444 +1 17407416 rs2647189 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,258:58,313:323 +1 17407526 rs3818021 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:508:0,235:0,235:261 +1 17408213 rs2295050 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:669:0,304:91,370:510 +1 17408356 rs2295048 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,267:82,344:426 +1 17408405 rs2295047 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,250:61,311:347 +1 17408622 rs2746527 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:620:0,275:72,347:308 +1 17409382 rs2647187 T C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:520:1,246:1,246:198 +1 17409539 rs11368051 AT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:642:0,293:62,62:421 +1 17409829 rs4989050 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:577:0,262:62,324:360 +1 17410364 rs1883913 G A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:708:0,257:76,322:463 +1 17412343 rs2746524 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:462:0,200:73,268:391 +1 17412770 rs2647185 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:455:0,200:71,262:388 +1 17414305 rs742795 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:471:0,211:63,265:385 +1 17415799 rs2746519 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:616:0,291:79,338:421 +1 17416106 rs2235923 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:544:0,225:107,323:522 +1 17416462 rs2235922 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:523:0,230:77,297:338 +1 17416593 rs910229 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17416593_G_A:531:0,228:84,310:404 +1 17416595 rs910228 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17416593_G_A:533:0,230:84,312:404 +1 17417253 rs2014725 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:457:0,196:68,256:408 +1 17417313 rs2014719 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17417313_T_C:441:1,189:76,257:368 +1 17417315 rs2014718 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17417313_T_C:446:1,192:76,258:374 +1 17417958 rs11588995 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:620:0,280:77,342:448 +1 17418883 rs2647184 A G 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:17418883_A_G:532:0,206:0,197:331 +1 17418894 rs2273111 A G 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:17418883_A_G:552:0,211:0,199:407 +1 17419066 rs11203298 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,233:59,274:351 +1 17419425 rs4920499 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,SolidPE50x50GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:425:61,226:0,162:183 +1 17419488 rs61767325 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:619:100,346:0,240:392 +1 17419693 rs12411274 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:454:0,209:37,246:302 +1 17420398 rs2235920 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:482:0,202:88,287:389 +1 17421286 rs7547459 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:534:0,240:61,299:347 +1 17421746 rs2746518 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17421746_T_A:569:0,270:56,317:366 +1 17421748 rs2746517 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17421746_T_A:571:0,272:56,319:366 +1 17421764 rs2076613 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,288:59,327:418 +1 17421923 rs2235919 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,276:84,332:436 +1 17421956 rs2076612 C A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,247:73,313:230 +1 17422011 rs2076611 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,276:50,308:361 +1 17422192 rs2076610 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,251:45,278:380 +1 17422226 rs2076609 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:512:0,250:39,272:322 +1 17422302 rs2076608 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:521:0,243:58,284:408 +1 17422610 rs2235918 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:486:0,218:73,277:436 +1 17422660 rs2076607 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:435:0,208:35,230:327 +1 17422998 rs2235917 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,252:54,285:414 +1 17423072 rs2746515 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,246:64,290:406 +1 17423304 rs2746514 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17423304_T_C:562:0,241:94,329:486 +1 17423310 rs11576552 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17423304_T_C:550:0,240:80,315:407 +1 17423390 rs2281375 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:620:0,279:82,345:415 +1 17423475 rs932454 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:576:0,258:84,323:481 +1 17423550 rs932453 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:521:0,237:76,293:466 +1 17423925 rs2243403 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:531:0,247:43,288:304 +1 17424133 rs2244949 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:565:0,253:80,319:430 +1 17424260 rs10649306 T TGTTA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:503:0,228:75,75:420 +1 17424302 rs2746510 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,231:89,89:529 +1 17424330 rs2647183 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17424330_G_A:524:0,237:68,294:369 +1 17424337 rs2746509 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17424330_G_A:510:0,240:52,284:353 +1 17424396 rs2746508 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:564:0,260:51,309:336 +1 17424516 rs2746507 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,248:57,298:360 +1 17424633 rs2235916 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17424633_G_A:429:0,210:0,204:176 +1 17424640 rs2235915 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17424633_G_A:433:0,208:0,204:173 +1 17424845 rs2235914 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,279:53,315:394 +1 17425077 rs2235913 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:696:0,317:97,381:558 +1 17425473 rs2235912 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:1,240:78,313:429 +1 17425619 rs2235911 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:504:0,221:75,290:395 +1 17425829 rs2235910 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:521:0,232:71,288:422 +1 17426540 rs66788067 T TG 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:473:1,205:0,0:182 +1 17426762 rs2746505 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:692:0,292:122,407:412 +1 17428218 rs2746502 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:600:0,267:85,339:414 +1 17428308 rs2244416 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:667:0,299:91,379:454 +1 17428832 rs11203299 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:601:0,280:51,320:369 +1 17429185 rs737428 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:483:0,163:117,117:505 +1 17430157 rs35136759 A AC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:607:2,283:51,51:436 +1 17431119 rs2746499 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:321:0,126:42,42:372 +1 17431277 rs6701159 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:452:0,206:51,246:361 +1 17431618 rs11203300 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:447:0,218:0,213:253 +1 17431681 rs2647172 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:502:0,239:31,261:309 +1 17432140 rs7527697 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,237:68,305:346 +1 17432399 rs878269 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,239:86,305:485 +1 17432745 rs910224 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:477:0,222:38,260:283 +1 17433126 rs2057091 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:450:0,188:86,274:405 +1 17433158 rs2057090 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:457:1,195:71,265:372 +1 17433273 rs61517496 A AGAG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:308:0,154:0,0:160 +1 17433308 rs3830849 A AG 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:451:81,265:0,0:452 +1 17433509 rs4920337 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:503:0,215:93,295:483 +1 17434128 rs2281371 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:512:0,236:44,272:332 +1 17434546 rs2295046 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:473:1,190:63,252:368 +1 17434663 rs2295045 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:348:0,136:43,43:352 +1 17437330 rs10788656 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,273:60,305:409 +1 17437888 rs1883912 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:575:0,253:91,323:513 +1 17439018 rs5772747 TG T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:415:0,182:51,51:391 +1 17439195 rs1022579 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,238:91,329:411 +1 17439354 rs2746496 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17439354_G_A:576:0,260:92,329:520 +1 17439358 rs11203301 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17439354_G_A:577:0,257:96,330:527 +1 17439746 rs67222510 CTATTATTAT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:389:0,217:0,0:160 +1 17439963 rs2746495 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:448:0,214:0,212:263 +1 17440854 rs2143810 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:571:1,251:82,320:434 +1 17443550 rs6675839 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:129,137:170,174:974 +1 17444480 rs1569755 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:125,117:147,145:837 +1 17444652 rs2143809 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:458:100,93:127,127:861 +1 17444769 rs1005753 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:475:98,111:131,135:801 +1 17445082 rs12750541 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:107,126:146,177:1120 +1 17448611 rs2647177 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:495:0,218:73,281:409 +1 17449069 rs1005307 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,275:54,329:347 +1 17453277 rs10749615 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,232:76,298:449 +1 17453347 rs4587604 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:489:69,278:0,207:379 +1 17453725 rs4920354 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:406:0,208:0,208:198 +1 17454608 rs11203304 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:590:2,259:75,332:395 +1 17455376 rs35989645 AT A 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,271:72,72:261 +1 17456050 rs7553356 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:516:0,238:44,280:291 +1 17456316 rs5772749 T TA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:552:0,236:77,77:461 +1 17457862 rs145708093 CT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xGATK;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:104:0,98:0,98:99 +1 17459326 rs12132949 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:731:143,174:200,216:1221 +1 17459855 rs910223 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,248:78,320:424 +1 17460261 rs34754370 CT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:263:1,109:1,109:99 +1 17460724 rs2311191 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:444:0,204:67,243:435 +1 17460994 rs12137281 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,239:54,287:332 +1 17461078 rs910222 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:418:96,262:0,0:482 +1 17461094 rs3062368 G GCACA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:275:1,134:0,0:259 +1 17461433 rs910221 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:136,122:145,145:780 +1 17461548 rs7517419 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:571:2,244:89,321:446 +1 17462001 rs2009831 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:463:0,186:106,285:416 +1 17462261 rs877648 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,250:43,285:327 +1 17462404 rs2871693 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,230:51,278:334 +1 17462595 rs2871692 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:541:0,256:56,298:373 +1 17462665 rs2311190 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17462665_G_A:524:0,247:51,284:334 +1 17462681 rs2311189 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17462665_G_A:524:0,240:52,292:342 +1 17462763 rs4350245 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,272:48,301:383 +1 17462913 rs12134124 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:473:0,218:46,258:338 +1 17463128 rs12138500 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:434:0,198:61,244:392 +1 17463182 rs12138528 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:483:0,215:65,274:394 +1 17463269 rs910217 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:508:0,225:0,0:406 +1 17463313 rs34880234 TC T 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:523:0,199:0,0:461 +1 17463492 rs2009572 T A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:409:0,208:0,208:198 +1 17463679 rs2311188 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:500:0,221:72,282:430 +1 17463723 rs2103749 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:561:0,258:79,314:425 +1 17464013 rs2092614 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:527:1,227:85,298:448 +1 17464044 rs2092613 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:446:0,212:35,236:321 +1 17464076 rs2092612 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:449:1,191:58,245:360 +1 17464198 rs6677159 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:460:0,195:80,264:447 +1 17464226 rs6662746 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:470:0,200:83,270:454 +1 17464305 rs6680373 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:517:0,228:85,289:489 +1 17464337 rs6677294 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:517:0,214:94,302:474 +1 17464437 rs6672477 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:565:0,246:84,327:437 +1 17464476 rs6663074 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,238:66,290:413 +1 17464703 rs11203308 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:585:0,263:83,328:450 +1 17464780 rs10788657 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:555:0,254:60,307:381 +1 17465174 rs2746486 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:596:0,263:86,329:477 +1 17465501 rs7530306 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:412:0,198:0,185:296 +1 17465615 rs6586502 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,239:58,275:406 +1 17465937 rs2746482 A G 50 PASS platforms=3;platformnames=CG,10X,Illumina;datasets=3;datasetnames=CGnormal,10XChromium,HiSeqPE300x;callsets=4;callsetnames=CGnormal,10XGATKhaplo,HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:437:0,152:85,85:429 +1 17466122 rs140026274 CAAATAAAT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:338:0,180:0,0:259 +1 17466262 rs1883908 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:597:0,284:69,322:478 +1 17466413 rs1883907 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:578:0,278:60,308:445 +1 17466582 rs2249579 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,255:33,279:298 +1 17466730 rs11406732 C CT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,267:64,64:405 +1 17467506 rs6664792 C A 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:443:86,267:0,0:311 +1 17468107 rs34156986 GC G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:464:0,215:41,41:369 +1 17468350 rs2746481 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:521:0,242:52,277:384 +1 17469692 rs2746479 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:688:0,330:71,377:455 +1 17471321 rs11586655 G C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:406:2,141:2,137:132 +1 17472209 rs4920356 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:531:0,250:64,278:479 +1 17473895 rs6586503 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:467:0,209:62,262:380 +1 17474127 rs6586504 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,253:75,325:408 +1 17474394 rs6693480 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:658:0,302:92,372:492 +1 17476278 rs12035906 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:661:0,298:98,375:521 +1 17477086 rs2746521 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:17477086_C_T:596:0,268:59,327:359 +1 17477092 rs2746520 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:17477086_C_T:590:0,268:54,322:346 +1 17477105 rs11203315 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:17477086_C_T:542:0,251:44,295:292 +1 17477149 rs6663579 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:529:0,220:80,80:445 +1 17477882 rs11203316 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,247:74,321:358 +1 17477993 rs2647153 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:480:0,198:69,267:357 +1 17478661 rs10788659 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:553:0,253:81,311:372 +1 17480534 rs56368330 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:124,170:153,191:1093 +1 17482472 rs4920357 G A 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:649:67,360:0,0:322 +1 17484103 rs2454156 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,283:96,368:464 +1 17484843 rs56101888 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:680:145,170:34,31:924 +1 17485487 rs2454158 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17485487_T_A:517:0,254:51,273:437 +1 17485496 rs6691454 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17485487_T_A:510:0,248:54,266:389 +1 17485551 rs6681946 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:509:1,221:87,291:469 +1 17485653 rs2454160 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,242:65,288:426 +1 17485914 rs2454161 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:510:0,234:57,280:376 +1 17485940 rs2454162 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:502:0,225:74,285:435 +1 17486722 rs4620585 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:626:0,287:84,348:485 +1 17487951 rs2454163 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:642:0,286:81,357:459 +1 17489167 rs12139529 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:529:0,244:66,297:406 +1 17489583 rs2454167 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:513:0,229:66,286:405 +1 17489637 rs2454168 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:531:0,233:73,298:379 +1 17489702 rs2454169 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:495:0,216:67,283:387 +1 17489820 rs11203317 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:603:0,269:82,336:470 +1 17490249 rs2454170 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:553:0,249:89,321:455 +1 17490832 rs2501810 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:605:0,258:94,348:459 +1 17491354 rs2454171 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:571:0,265:65,322:395 +1 17493947 rs2501811 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:553:0,238:105,317:572 +1 17494075 rs2454172 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,268:50,297:397 +1 17494099 rs2454173 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:577:0,259:90,323:527 +1 17495012 rs2501812 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:571:0,266:49,315:321 +1 17495091 rs2501813 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,281:61,332:391 +1 17495273 rs72643885 G T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:412:90,77:23,17:524 +1 17495311 rs2501814 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:556:0,207:105,306:315 +1 17496777 rs56068965 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:633:130,148:165,190:1123 +1 17497428 rs2454175 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:659:154,145:195,165:762 +1 17498143 rs2454176 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:594:55,319:0,264:342 +1 17500227 rs2935931 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,212:112,313:529 +1 17501450 rs12117011 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:661:1,289:90,371:457 +1 17501651 rs2977255 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:613:0,278:64,342:245 +1 17501720 rs3003452 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:632:0,305:50,336:402 +1 17501814 rs35354876 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,272:41,41:357 +1 17501898 rs2977258 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:706:0,338:65,372:457 +1 17502159 rs2977260 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:567:0,274:0,274:231 +1 17502219 rs2977261 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:532:0,249:40,289:298 +1 17502941 rs2935934 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17502941_A_G:564:0,262:67,316:379 +1 17502942 rs2935935 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17502941_A_G:566:0,264:67,318:379 +1 17503117 rs7529982 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:658:0,281:96,377:424 +1 17503210 rs2977265 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:668:1,291:114,380:585 +1 17503418 rs3003453 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:716:0,334:84,393:460 +1 17503682 rs3003454 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:844:0,373:119,469:581 +1 17503899 rs12068422 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:773:0,356:90,421:478 +1 17504802 rs35497865 A AT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:750:0,358:56,56:448 +1 17504846 rs2977276 T A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:762:1,349:79,79:382 +1 17504909 rs34171331 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:765:0,357:82,416:455 +1 17504961 rs2977281 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:828:0,412:69,430:491 +1 17505489 rs2935939 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:757:82,426:0,340:419 +1 17505676 rs2935938 A G 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:853:108,498:0,366:512 +1 17506149 rs2935937 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:853:1,420:65,459:438 +1 17506429 rs3003455 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:571:0,246:90,333:430 +1 17506521 rs2935936 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:634:0,290:72,352:402 +1 17507054 rs56947990 G GA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:641:0,305:37,37:292 +1 17507075 rs57564483 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:678:1,314:56,56:369 +1 17507229 rs61632753 T TA 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:611:38,302:8,272:131 +1 17507380 rs72643896 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:763:178,177:203,204:1022 +1 17507608 rs3003456 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:789:0,366:86,432:489 +1 17507931 rs3003457 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:807:1,374:103,450:514 +1 17508393 rs11406970 A AG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17508393_A_AG:653:0,294:64,64:438 +1 17508411 rs3003458 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17508393_A_AG:642:0,297:56,56:396 +1 17508473 rs3003459 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:633:0,275:87,358:440 +1 17508566 rs2935932 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,276:70,340:399 +1 17508803 rs2935930 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:666:0,329:53,351:434 +1 17508821 rs2935929 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:17508821_T_C:660:0,325:44,343:414 +1 17508828 rs2935928 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:17508821_T_C:657:0,325:44,340:397 +1 17509096 rs34835115 G A 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:684:107,401:0,294:468 +1 17509139 rs34645207 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:583:0,286:0,286:267 +1 17509209 rs34730817 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1|1:17509209_A_C:527:0,234:61,295:364 +1 17509223 rs71644025 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1|1:17509209_A_C:541:0,237:86,323:438 +1 17509230 rs34274040 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1|1:17509209_A_C:547:0,228:89,317:441 +1 17509318 rs34478843 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:17509318_T_C:535:0,246:41,287:302 +1 17509330 rs34887394 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:17509318_T_C:565:0,263:41,304:277 +1 17509630 rs2935927 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:548:0,247:82,316:371 +1 17509771 rs2935926 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:548:0,258:63,294:449 +1 17510126 rs2977231 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:588:0,263:80,323:478 +1 17510238 rs2977232 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:648:0,292:89,362:489 +1 17510295 rs2935925 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:627:0,276:88,358:404 +1 17510482 rs2935924 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:534:0,241:65,302:386 +1 17510703 rs2935923 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:637:0,295:68,351:400 +1 17510886 rs2977239 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:521:0,247:56,281:413 +1 17510919 rs2977240 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,240:97,324:501 +1 17511042 rs3003460 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:555:0,248:79,321:419 +1 17511129 rs2935922 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:489:0,205:87,292:441 +1 17511243 rs2935921 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:613:0,265:84,349:426 +1 17511571 rs2935920 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:493:0,211:75,286:397 +1 17511772 rs3003461 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17511772_C_T:530:0,238:61,299:316 +1 17511785 rs3003462 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17511772_C_T:533:0,231:85,316:397 +1 17511892 rs2977241 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,245:60,294:367 +1 17512803 rs3003463 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,228:72,294:393 +1 17512912 rs2935919 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:532:1,225:74,298:391 +1 17512977 rs2977242 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:582:3,247:93,332:453 +1 17513042 rs2977243 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:544:0,246:73,309:400 +1 17513702 rs2977244 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,271:50,307:372 +1 17513912 rs11320236 CT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,261:61,61:402 +1 17514122 rs2977245 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,267:66,326:384 +1 17514149 rs2977246 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:589:0,269:59,322:370 +1 17514734 rs3003464 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:685:0,334:65,361:491 +1 17515804 rs2977247 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:616:0,281:49,330:311 +1 17515888 rs2977248 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:528:0,238:48,286:323 +1 17515992 rs2977249 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,243:63,306:364 +1 17516218 rs2977250 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,277:56,317:385 +1 17516523 rs2935944 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:619:1,283:68,346:395 +1 17517055 rs2935943 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,252:72,324:358 +1 17517125 rs3003465 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:600:1,274:81,336:432 +1 17517255 rs2935942 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:479:0,214:58,264:349 +1 17520112 rs2501819 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:455:0,200:65,259:345 +1 17521098 rs2454177 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:553:0,248:105,312:432 +1 17521144 rs2977254 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,250:92,294:560 +1 17521274 rs3003469 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:478:1,214:62,261:395 +1 17522821 rs754171 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,285:69,324:468 +1 17522881 rs2454182 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,231:83,303:444 +1 17522940 rs2454181 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:526:0,239:72,297:431 +1 17523137 rs2977256 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,259:84,322:457 +1 17523194 rs2935941 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:599:1,279:68,323:414 +1 17523263 rs3003470 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17523263_G_A:658:1,278:0,262:533 +1 17523286 rs2935940 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17523263_G_A:636:1,266:0,252:517 +1 17523470 rs59189823 GGGGGGATGCCCCACAGA G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:439:0,215:67,67:424 +1 17523502 rs3003471 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,230:74,74:444 +1 17523598 rs2977257 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,228:97,319:456 +1 17523806 rs873319 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17523806_C_T:582:0,256:102,338:525 +1 17523811 rs873320 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17523806_C_T:571:0,252:92,324:509 +1 17524010 rs873321 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:608:0,272:86,345:419 +1 17524343 rs3003472 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:517:0,248:44,280:334 +1 17525065 rs2977259 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:429:0,204:44,228:369 +1 17525965 rs3003473 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:660:0,312:60,354:375 +1 17526654 rs3003474 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,242:61,284:428 +1 17527227 rs3003475 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:634:0,265:0,259:455 +1 17527869 rs3003476 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:645:0,313:70,346:469 +1 17528551 rs72645519 A C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:475:111,109:111,109:198 +1 17528920 rs10788660 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:516:0,207:80,80:367 +1 17528962 rs10788661 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,231:77,308:396 +1 17529168 rs11203330 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:487:108,94:43,37:949 +1 17529466 rs11203331 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:184,155:122,98:1292 +1 17530201 rs10888007 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:536:0,221:109,320:494 +1 17531354 rs4920571 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:131,129:158,142:855 +1 17531582 rs2293910 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:121,111:178,170:1512 +1 17532833 rs4376784 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:494:103,122:128,144:609 +1 17532879 rs4244377 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:501:113,119:125,147:569 +1 17533008 rs4244378 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:550:124,126:155,145:731 +1 17533468 rs12138305 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:92,129:118,157:660 +1 17533676 rs12082617 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:17533676_G_A:579:117,139:155,160:652 +1 17533684 rs10888008 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:17533676_G_A:580:117,148:149,157:493 +1 17537257 rs2977273 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:546:124,126:137,159:479 +1 17537623 rs2977274 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:650:150,135:188,169:1064 +1 17538842 rs2977277 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:444:107,83:140,116:871 +1 17538952 rs2977278 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:362:88,74:0,0:616 +1 17538977 rs2977279 G C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:379:0,180:0,0:323 +1 17539073 rs4920358 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:505:109,113:138,143:987 +1 17539095 rs2977280 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:459:101,109:121,126:655 +1 17539679 rs56378950 C CGGAG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=3;callsetnames=CGnormal,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0|1:17539677_A_AT:313:122,125:23,43:827 +1 17543596 rs72646742 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:368:88,79:10,16:455 +1 17545989 rs10749617 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:449:0,194:74,256:449 +1 17546590 rs11589046 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:434:0,184:83,251:463 +1 17546663 rs56181700 TC T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:370:0,175:21,21:295 +1 17546808 rs2977288 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:478:0,209:77,273:436 +1 17547379 rs12044142 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:126,120:175,161:1179 +1 17548106 rs2977289 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:431:0,189:70,247:409 +1 17548193 rs11203334 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:420:88,94:111,124:792 +1 17548527 rs3003480 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:115,111:148,147:1003 +1 17549180 rs72646750 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:145,139:168,161:862 +1 17550225 rs3003481 T C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:701:0,234:57,279:395 +1 17550303 rs2293913 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:106,144:144,169:825 +1 17550601 rs3003482 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,229:86,310:438 +1 17551034 rs2293915 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:537:0,242:68,298:411 +1 17551388 rs12096215 C G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:420:91,90:35,24:713 +1 17551409 rs56782565 A AG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:438:87,88:38,42:866 +1 17551570 rs12057156 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:497:128,101:148,124:745 +1 17551943 rs16823950 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:471:105,101:132,133:916 +1 17552875 rs2977290 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,267:45,298:360 +1 17553091 rs12024174 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:17553091_T_C:615:123,138:173,182:1147 +1 17553113 rs12024177 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:17553091_T_C:616:128,148:158,185:785 +1 17553453 rs2977291 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:544:0,238:0,233:262 +1 17553483 rs141744956 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:522:117,103:117,103:292 +1 17554025 rs72398624 CAAAT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:294:0,158:0,0:259 +1 17554734 rs10888009 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:641:160,138:181,151:626 +1 17555316 rs2977233 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:543:123,104:161,140:1043 +1 17555508 rs2977234 G T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:93,131:120,163:823 +1 17564826 rs2977308 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:596:0,270:68,336:380 +1 17564895 rs2977309 G C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:544:0,243:71,310:300 +1 17573015 rs72646764 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:139,132:168,168:1141 +1 17575155 rs12404500 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:525:94,292:4,199:349 +1 17587518 rs72646773 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:112,122:156,154:983 +1 17589048 rs3003427 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:607:0,293:68,328:488 +1 17599149 rs3003432 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:445:94,97:112,117:527 +1 17599205 rs7545176 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:401:76,72:21,25:622 +1 17599525 rs3003433 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:555:0,262:43,299:317 +1 17600317 rs12037653 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:135,129:149,157:877 +1 17601419 rs2977297 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:485:0,202:96,287:487 +1 17601766 rs35532821 TA T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:334:67,94:50,81:301 +1 17602087 rs3766298 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:728:153,177:198,198:794 +1 17602366 rs2977298 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:620:0,287:71,338:447 +1 17602607 rs28504120 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:111,142:151,177:800 +1 17603687 rs139511864 CT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:460:111,128:79,100:318 +1 17603783 rs3003436 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:108,112:146,150:867 +1 17603842 rs112312920 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:513:105,103:143,156:780 +1 17604437 rs72646786 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:536:102,127:142,158:751 +1 17604701 rs2977299 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:744:158,152:224,206:1312 +1 17604760 rs12044550 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:716:148,168:197,203:957 +1 17604924 rs12566659 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:681:139,151:181,202:1008 +1 17606572 rs3003439 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:649:0,270:127,383:559 +1 17608353 rs12037558 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:129,131:139,146:618 +1 17609448 rs2293920 G T 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:638:134,109:147,128:456 +1 17610156 rs59877223 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:121,114:145,144:826 +1 17610602 rs2977301 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:17610602_A_C:426:78,77:129,115:1008 +1 17610607 rs3750303 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|0:17610602_A_C:440:82,88:119,124:1133 +1 17610899 rs3750304 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:119,106:164,140:980 +1 17611209 rs72646792 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:120,138:166,168:559 +1 17611288 rs10492990 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:129,151:157,196:1161 +1 17611519 rs6684387 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17611519_T_C:506:1,232:67,294:365 +1 17611520 rs6666990 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17611519_T_C:504:1,230:67,292:365 +1 17611548 rs2977303 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,227:81,299:430 +1 17611615 rs2977304 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:593:0,262:82,335:409 +1 17611869 rs3003441 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:621:0,291:57,334:374 +1 17612138 rs3003442 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:535:1,221:81,301:402 +1 17612492 rs12731548 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:426:93,81:27,33:939 +1 17613066 rs3003444 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:127,135:155,160:787 +1 17613412 rs35464350 GC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:479:95,118:23,28:611 +1 17613737 rs2977305 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:584:0,266:75,329:432 +1 17613809 rs12568771 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:153,115:176,139:780 +1 17613905 rs3003445 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:605:0,277:62,325:409 +1 17616872 rs2501775 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:634:98,366:0,0:487 +1 17616895 rs150259008 AAAT A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:470:0,239:0,0:259 +1 17621139 rs2477146 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:495:0,210:89,292:456 +1 17621327 rs11811933 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:632:150,133:182,155:1362 +1 17621437 rs2477145 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:460:95,97:126,123:675 +1 17621478 rs145745514 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:464:96,97:131,132:911 +1 17621758 rs7417622 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:531:102,117:134,152:897 +1 17622148 rs7552802 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:120,122:139,147:864 +1 17622654 rs7548900 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:127,117:166,156:1355 +1 17622897 rs7542629 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:506:88,119:132,158:1112 +1 17623030 rs66732999 AT A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:136,128:23,27:698 +1 17623197 rs142738129 G GA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:120,126:29,40:918 +1 17624924 rs6657142 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:497:99,117:42,35:1145 +1 17625035 rs7517203 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:508:0,210:101,309:489 +1 17625116 rs11801319 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:128,112:174,128:626 +1 17625531 rs6586516 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:561:133,113:162,149:1173 +1 17626366 rs12047600 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:663:149,146:149,146:305 +1 17626419 rs12044826 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:687:155,161:193,187:978 +1 17626587 rs6699518 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:506:125,107:142,127:470 +1 17626756 rs6702029 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:708:0,315:78,390:377 +1 17626998 rs7554634 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:17626998_T_C:588:136,135:165,149:476 +1 17627006 rs7551798 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:17626998_T_C:584:134,135:164,150:483 +1 17627132 rs12739852 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:557:135,124:144,145:347 +1 17627172 rs3003447 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,261:0,258:351 +1 17627191 rs3003448 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:639:181,174:138,144:475 +1 17627356 rs3003449 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:17627356_G_C:700:163,152:210,179:829 +1 17627362 rs2985377 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:17627356_G_C:693:162,152:207,175:775 +1 17627383 rs6702779 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:670:153,145:198,183:930 +1 17627411 rs2501778 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:153,124:183,153:906 +1 17627622 rs2501779 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:137,132:183,156:873 +1 17627780 rs6688265 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:155,120:189,143:794 +1 17627844 rs9435764 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:623:141,115:203,150:865 +1 17627888 rs9435690 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:602:128,110:180,172:1185 +1 17628152 . T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:317:33,16:0,0:436 +1 17628742 rs2477143 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:534:133,113:128,111:618 +1 17628761 rs2501780 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:523:0,245:0,237:289 +1 17628964 rs2501781 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:748:185,182:189,194:960 +1 17629004 rs2477142 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:763:169,182:209,204:1040 +1 17629045 rs2477141 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:716:151,154:204,215:1537 +1 17629530 rs2501782 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:124,127:154,152:731 +1 17629898 rs113012552 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:17629898_C_T:531:124,94:182,125:653 +1 17629912 rs2477140 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:17629898_C_T:520:113,100:164,142:975 +1 17630115 rs6664258 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:117,122:143,169:955 +1 17630193 rs2501784 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:17630193_A_G:578:119,114:59,53:1495 +1 17630197 rs6586517 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:17630193_A_G:587:121,119:63,51:1431 +1 17630211 rs2501785 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:586:130,122:50,39:1214 +1 17630256 rs113358264 C CTCCTCTGAG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:491:123,98:29,17:502 +1 17630280 rs2477139 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:134,111:47,35:907 +1 17630305 rs2477138 G T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:132,122:54,43:1149 +1 17630372 rs2501786 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:125,124:161,148:937 +1 17630727 rs2501787 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:143,136:171,144:532 +1 17630838 rs12401287 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:549:109,139:138,167:793 +1 17630857 rs2985376 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:540:117,133:135,157:648 +1 17630878 rs2985375 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:533:110,126:136,160:717 +1 17630921 rs2477136 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:560:102,129:145,187:991 +1 17630943 rs2501788 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:103,149:140,174:633 +1 17631022 rs2501789 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:17631022_C_A:596:134,129:174,165:1020 +1 17631023 rs12402270 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:17631022_C_A:596:133,130:173,166:1020 +1 17631118 rs11800611 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:143,114:192,155:944 +1 17631353 rs877551 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:586:124,135:49,33:892 +1 17631445 rs877553 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:496:99,127:125,140:393 +1 17631652 rs11800688 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:530:156,157:0,0:1168 +1 17631661 . A AGTGT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:378:106,73:0,0:259 +1 17631665 . A AGT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:315:1,83,73:0,0,0:242 +1 17631665 . A T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:315:1,83,73:0,0,0:242 +1 17631810 rs34051324 G A 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:17631810_G_A:526:120,110:21,39:507 +1 17631814 rs57847210 T TA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17631810_G_A:521:0,230:66,66:568 +1 17632209 rs2501792 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:532:0,240:86,303:495 +1 17632237 rs2501793 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,252:87,321:478 +1 17632382 rs1886303 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:496:91,129:121,159:901 +1 17632600 rs2501794 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:605:0,266:101,342:527 +1 17633246 rs11579504 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:518:113,122:144,142:756 +1 17633499 rs2501795 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:554:0,219:125,344:403 +1 17633522 rs2501796 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,238:105,327:511 +1 17633572 rs2477134 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:533:122,120:148,148:911 +1 17633892 rs2477133 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:561:1,234:116,329:558 +1 17634057 rs2501797 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:634:0,297:91,347:570 +1 17635036 rs2501798 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,244:107,338:522 +1 17635072 rs2501799 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:552:0,247:82,314:442 +1 17635141 rs2477132 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,251:52,300:334 +1 17635237 rs2501800 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:555:0,246:74,74:485 +1 17635277 rs10693700 C CGT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:483:0,226:35,35:323 +1 17635396 rs1886302 A G 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:17635396_A_G:601:180,178:122,125:824 +1 17635411 rs1886301 G A 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|0:17635396_A_G:511:139,129:126,123:372 +1 17636288 rs12569317 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:639:133,138:178,190:1066 +1 17636321 rs2477131 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:646:139,138:187,178:1034 +1 17636363 rs2501801 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:127,139:165,172:782 +1 17636719 rs2501802 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:611:0,286:84,342:496 +1 17636860 rs4920591 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:506:0,232:72,285:429 +1 17637273 rs35758312 TG T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:470:108,92:38,25:550 +1 17637418 rs2477130 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:100,128:129,170:690 +1 17638145 rs6586520 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:495:1,223:45,267:309 +1 17638752 rs10888017 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:553:0,246:64,310:261 +1 17641259 rs2501807 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:568:0,255:74,320:396 +1 17641436 rs2501808 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:620:0,272:92,360:452 +1 17641684 rs1886300 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,256:85,329:399 +1 17642709 rs58218115 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:528:0,240:56,296:341 +1 17642758 rs2477129 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:487:0,228:44,272:299 +1 17643163 rs6687815 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:478:17,249:0,0:278 +1 17643206 . T AAATA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:126:0,0:0,0:145 +1 17643210 rs56320914 T A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:17643205_T_TAAA:396:0,205:0,0:251 +1 17643214 rs372683222 T A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:17643205_T_TAAA:406:0,215:0,0:251 +1 17643218 rs55877413 T A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:17643205_T_TAAA:409:0,218:0,0:251 +1 17643222 rs12405468 T A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:17643205_T_TAAA:415:0,224:0,0:251 +1 17643290 rs6673392 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:552:0,265:0,265:236 +1 17643572 rs6673715 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:627:0,305:49,333:387 +1 17643663 rs72633840 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:604:140,137:167,156:626 +1 17643959 rs12074670 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,247:61,308:358 +1 17646526 rs2147333 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:710:1,327:86,398:455 +1 17646694 rs2147332 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:546:0,263:42,288:362 +1 17647039 rs6686220 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:555:0,245:76,310:383 +1 17647189 rs11203354 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:561:0,257:63,309:364 +1 17647475 rs10788664 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:631:0,280:107,360:554 +1 17649358 rs10888018 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,292:55,316:407 +1 17649445 rs10749618 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,250:103,335:518 +1 17649489 rs10888019 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:508:0,234:78,280:501 +1 17650247 rs11203358 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,230:61,291:355 +1 17651230 rs6692262 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:739:0,348:82,397:496 +1 17651628 rs1204895 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:746:0,342:84,412:461 +1 17665527 rs72637416 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:610:123,136:173,177:1358 +1 17666547 rs1635575 G A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:362:9,150:9,150:198 +1 17675650 rs1748015 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:501:0,233:57,284:308 +1 17675889 rs1613767 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:508:0,231:66,277:428 +1 17696508 rs1204881 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:664:0,296:93,376:477 +1 17707739 rs1204898 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,249:79,299:488 +1 17707798 rs10788668 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:589:0,264:85,326:468 +1 17708349 rs7556072 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,249:84,326:412 +1 17708928 rs7513817 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:563:1,249:77,310:455 +1 17709002 rs6586535 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:562:1,244:80,315:426 +1 17710631 rs10158217 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,246:61,305:353 +1 17710919 rs10888028 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:600:1,259:93,343:470 +1 17711391 rs72637458 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,294:70,328:489 +1 17711691 rs59348185 T TTG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:508:0,222:81,81:485 +1 17711898 rs2762892 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:534:0,224:93,311:459 +1 17711987 rs7523534 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,251:83,317:464 +1 17712554 rs5772757 T TA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,242:60,60:420 +1 17712613 rs1535877 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:547:1,252:68,307:408 +1 17712649 rs1535876 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:567:0,265:64,319:307 +1 17712702 rs1535875 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:664:0,294:88,376:460 +1 17713969 rs11803970 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:557:61,289:1,229:349 +1 17716074 rs1544066 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,218:109,321:522 +1 17717162 rs12124893 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17717162_C_T:501:0,213:41,246:297 +1 17717183 rs55964714 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17717162_C_T:546:1,241:39,274:296 +1 17717353 rs2248453 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:547:0,247:58,303:363 +1 17717452 rs2248450 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,250:44,280:358 +1 17717967 rs12127366 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:539:0,236:53,289:334 +1 17718124 rs12127405 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:576:0,264:61,311:361 +1 17718418 rs72637462 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,270:61,321:395 +1 17718671 rs10709483 AG A 50 PASS platforms=5;platformnames=CG,Illumina,Ion,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:612:0,242:55,55:507 +1 17719089 rs72637463 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,242:66,292:397 +1 17719140 rs7529038 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:553:1,252:74,309:435 +1 17719184 rs7545226 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:1,260:89,326:502 +1 17719219 rs7545237 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,262:89,322:501 +1 17719535 rs10888031 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17719535_T_G:578:0,255:67,322:324 +1 17719546 rs11203377 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17719535_T_G:594:0,256:73,329:391 +1 17719605 rs10888032 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:552:0,252:50,299:343 +1 17719645 rs12128561 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17719645_A_G:531:72,307:0,232:371 +1 17719663 rs6695097 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17719645_A_G:533:0,230:81,306:397 +1 17719843 rs6695214 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,289:61,320:457 +1 17719932 rs6678027 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:599:0,272:70,330:414 +1 17719986 rs6678121 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,247:84,325:445 +1 17719997 rs6678127 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:568:0,248:90,333:425 +1 17720058 rs6687773 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:542:0,249:53,302:335 +1 17720088 rs6695531 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,246:47,293:325 +1 17720161 rs6687881 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:17720161_C_T:524:0,210:0,210:479 +1 17720162 rs6695640 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:17720161_C_T:522:0,208:0,208:479 +1 17720391 rs6678552 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_IonExomeTVC_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,245:89,319:412 +1 17720439 rs6695849 T C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_IonExomeTVC_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,217:88,302:453 +1 17720615 rs10458537 A C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_IonExomeTVC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:516:0,220:48,264:346 +1 17721094 rs4920602 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:605:0,280:82,328:524 +1 17721388 rs6691485 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:513:1,245:44,277:323 +1 17721721 rs147310450 TGA T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:561:95,318:0,0:282 +1 17721844 rs2800692 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,239:76,315:425 +1 17722363 rs7538876 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,253:47,279:375 +1 17722738 rs2800694 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,246:76,322:405 +1 17722952 rs56384645 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:528:0,234:76,305:432 +1 17723126 rs2526833 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:622:0,289:69,340:438 +1 17723476 rs61476146 C CCA 50 PASS platforms=4;platformnames=CG,Illumina,Ion,10X;datasets=4;datasetnames=CGnormal,HiSeqPE300x,IonExome,10XChromium;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:679:0,256:55,55:498 +1 17723739 rs12129196 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_IonExomeTVC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:659:0,265:54,319:359 +1 17723870 rs12129263 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:593:0,276:73,328:417 +1 17723964 rs12132197 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:539:1,251:59,291:374 +1 17724112 rs12132237 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:607:0,281:64,330:404 +1 17724331 rs7545115 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,252:79,316:440 +1 17724767 rs12134662 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:441:0,206:30,230:310 +1 17725011 rs1555663 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:431:0,196:57,57:295 +1 17725358 rs2244936 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:348:0,169:0,0:257 +1 17727379 rs4920603 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,245:81,315:458 +1 17728119 rs2526830 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:554:0,252:83,312:500 +1 17728231 rs2526829 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,241:69,294:340 +1 17729346 rs3074266 A AGG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:510:0,228:60,60:381 +1 17729903 rs2526828 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:564:0,283:38,289:400 +1 17730238 rs2800696 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:488:0,219:52,271:328 +1 17730705 rs113050396 C CTCCCTGCA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:364:0,173:0,0:291 +1 17730812 rs1555661 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17730812_A_G:473:0,221:41,262:297 +1 17730825 rs2526827 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17730812_A_G:464:0,211:50,261:321 +1 17731117 rs1555660 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:485:0,221:41,259:307 +1 17731390 rs34301723 GC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:338:0,152:0,0:283 +1 17731440 rs2762887 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:434:0,188:0,0:339 +1 17731593 rs55702180 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:598:131,125:51,29:800 +1 17731723 rs56947488 AAAAC A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17731723_AAAAC_A:547:0,247:58,58:395 +1 17731751 rs2800697 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:17731723_AAAAC_A:585:0,261:64,64:377 +1 17731789 rs2800698 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:544:0,255:34,289:272 +1 17732073 rs2762888 C A 50 PASS platforms=2;platformnames=Illumina,Solid;datasets=2;datasetnames=HiSeqPE300x,SolidSE75bp;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:550:2,270:2,267:108 +1 17732304 rs59640396 TGAAA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,275:26,26:328 +1 17732965 rs10695308 G GCCT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:565:0,248:0,0:523 +1 17733136 rs2800699 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:640:0,300:61,347:371 +1 17733147 rs2762889 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,292:41,326:326 +1 17736578 rs2762890 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:538:0,228:99,319:358 +1 17737440 rs55767926 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,236:77,313:394 +1 17738167 rs1204897 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:593:0,251:71,316:301 +1 17739313 rs942458 T G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:623:0,277:74,351:297 +1 17739586 rs942457 G A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:119,124:148,149:750 +1 17739820 rs1075535 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:537:0,241:72,301:398 +1 17741044 rs2019622 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:449:68,240:0,172:242 +1 17743613 rs6586538 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:659:0,308:71,354:411 +1 17743669 rs6586539 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,302:57,321:452 +1 17744536 rs57142672 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17744531_A_AT:610:0,291:63,63:413 +1 17744709 rs71652994 AT A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:290:7,121:2,116:111 +1 17744852 rs6678862 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:599:0,271:69,327:409 +1 17746273 rs7528427 C T 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:477:0,241:0,239:204 +1 17748027 rs1535874 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:616:0,273:80,335:460 +1 17748288 rs4920606 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:565:0,256:44,300:312 +1 17748427 rs7535033 C A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,262:64,326:258 +1 17749459 rs5772758 C CCAA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:436:0,180:86,86:476 +1 17749504 rs730153 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:414:0,181:61,61:426 +1 17750552 rs2762891 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:584:0,250:89,332:364 +1 17750685 rs6681150 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:528:0,238:71,296:428 +1 17752000 rs1324368 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:484:0,223:49,268:246 +1 17752451 rs1324367 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:506:0,219:72,291:375 +1 17752873 rs6702471 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:467:0,203:82,270:403 +1 17753191 rs11203383 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:458:0,199:54,236:400 +1 17753340 rs60387933 C A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,254:71,325:271 +1 17753639 rs6688886 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:628:0,289:72,343:422 +1 17754608 rs11577822 T G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,264:71,313:343 +1 17754767 rs1408421 A C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,242:57,292:269 +1 17754815 rs1408420 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:555:0,249:69,306:414 +1 17759245 rs2489611 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:661:0,289:99,373:415 +1 17760098 rs4920607 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:628:1,285:67,347:284 +1 17761335 rs7418084 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:616:0,261:104,355:413 +1 17765484 rs3121622 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:466:0,201:64,265:246 +1 17765505 rs3094883 G C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:507:0,213:83,296:306 +1 17767421 rs72638906 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:121,121:151,170:1069 +1 17769290 rs6675912 T G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:605:1,268:82,341:325 +1 17769682 rs2107680 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:605:0,272:59,329:350 +1 17771479 rs11203390 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:440:2,192:2,192:121 +1 17771569 rs11203391 A G 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:408:0,166:0,0:229 +1 17771696 rs2996660 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:543:0,252:45,293:217 +1 17772583 rs2489622 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:529:0,244:45,289:190 +1 17774844 rs7545955 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:622:0,293:72,335:463 +1 17775057 rs9943255 A T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:456:62,237:6,181:204 +1 17775336 rs142610574 T TTG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:315:2,154:0,0:246 +1 17776189 rs146947082 TAATA T 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:284:0,154:0,0:160 +1 17783753 rs60851140 T TTATC 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:276:62,75:0,0:160 +1 17787284 rs2800702 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:550:0,226:124,341:483 +1 17787479 rs10888033 G T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17787479_G_T:490:0,231:0,229:187 +1 17787485 rs10788672 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17787479_G_T:485:0,231:0,231:168 +1 17787980 rs2906123 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:439:20,201:0,181:243 +1 17788755 rs10888034 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:526:1,229:53,281:241 +1 17788888 rs10888035 A G 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17788888_A_G:541:0,233:60,60:321 +1 17789515 rs10888036 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:628:0,303:34,323:236 +1 17790244 rs4920371 A T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,294:77,361:339 +1 17790459 rs10749620 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,255:70,325:245 +1 17790537 rs56290955 GAA G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:451:1,221:1,221:99 +1 17791882 rs12078935 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:542:0,250:73,297:364 +1 17791941 rs12077703 A T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:529:1,242:79,293:398 +1 17792735 rs12035061 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:409:0,176:43,219:202 +1 17793114 rs12035179 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:469:0,174:68,68:427 +1 17793332 rs9729349 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:459:0,200:52,252:342 +1 17794205 rs4920609 C A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,277:32,301:215 +1 17794785 rs10749621 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:579:0,224:58,280:265 +1 17794817 rs10788673 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17794817_T_C:551:0,234:36,268:200 +1 17794835 rs10788674 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:17794817_T_C:544:0,241:33,272:282 +1 17795612 rs72637645 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:109,106:131,130:546 +1 17795789 rs2352804 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:515:0,249:36,36:211 +1 17798558 rs11203398 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:529:0,260:29,289:274 +1 17798773 rs12078095 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:17798773_C_T:496:47,283:0,0:163 +1 17798774 rs71014961 T TTTATTATTATTATTA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1|1:17798773_C_T:460:11,247:0,0:149 +1 17798980 rs12033102 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:579:1,275:36,310:285 +1 17799184 rs12038223 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:684:1,317:53,367:337 +1 17799755 rs71014962 T TA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:615:0,279:78,78:445 +1 17799829 rs11203400 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,275:71,340:397 +1 17800107 rs6702868 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:536:0,236:36,36:192 +1 17800402 rs10788675 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17800402_A_G:622:0,296:45,333:229 +1 17800419 rs6659366 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:17800402_A_G:580:0,271:51,312:231 +1 17800474 rs143653980 ATATT A 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:429:0,216:0,0:178 +1 17800541 rs11203401 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,262:28,290:275 +1 17801068 rs10788676 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,257:0,257:162 +1 17801849 rs12038813 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,292:47,320:378 +1 17801890 rs12036099 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:553:1,254:57,303:265 +1 17802228 rs10888037 A C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:537:0,242:62,298:240 +1 17802843 rs34213704 CAGTTT C 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=3;datasetnames=CGnormal,HiSeqPE300x,SolidSE75bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:446:0,212:43,43:289 +1 17803881 rs57638223 CAAA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:285:0,129:0,129:99 +1 17804806 rs11203403 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:553:0,252:30,282:173 +1 17805492 rs12726497 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:599:0,285:38,323:285 +1 17806189 rs10732830 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:628:0,285:69,348:376 +1 17806278 rs6661712 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,293:53,328:391 +1 17806577 rs72637668 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:673:40,350:0,308:308 +1 17807442 rs11203404 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:693:1,330:46,361:246 +1 17807537 rs11203405 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:651:0,304:70,351:351 +1 17807705 rs10888038 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,264:50,307:251 +1 17809320 rs11203407 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,252:0,249:266 +1 17809476 rs6657740 G T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:464:2,210:52,260:228 +1 17809846 rs6674891 A T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:462:0,199:56,251:253 +1 17811059 rs11203408 A G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:523:0,234:0,234:139 +1 17811296 rs11586031 G A 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:483:4,190:66,66:312 +1 17811703 rs12726884 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:477:2,216:41,255:195 +1 17811835 rs4920610 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:455:0,205:34,239:184 +1 17812225 rs4920611 G T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:463:0,215:50,252:267 +1 17813822 rs5772760 CT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:450:2,209:2,209:99 +1 17814482 rs2352819 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:489:0,231:50,267:283 +1 17816510 rs4481889 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:696:1,302:95,396:358 +1 17816599 rs3889122 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:642:0,292:71,363:291 +1 17817111 rs7530571 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:632:0,286:66,349:265 +1 17817920 rs4345835 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,267:63,330:273 +1 17818365 rs4920612 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:504:0,230:0,220:185 +1 17819031 rs140421447 TTAGA T 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=3;datasetnames=CGnormal,HiSeqPE300x,SolidSE75bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,279:51,51:338 +1 17819076 rs2353610 G T 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=3;datasetnames=CGnormal,HiSeqPE300x,SolidSE75bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:680:1,297:85,85:407 +1 17820221 rs12569045 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:409:0,183:55,224:268 +1 17820550 rs6586554 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,224:70,291:277 +1 17820619 rs6691937 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:521:0,226:82,297:354 +1 17820711 rs36008239 GC G 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=3;datasetnames=CGnormal,HiSeqPE300x,SolidSE75bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:513:0,234:45,45:290 +1 17820742 rs6689677 C A 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:539:1,263:28,28:290 +1 17821017 rs6586555 C A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,258:62,313:246 +1 17821090 rs10736367 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:576:0,271:62,312:320 +1 17821984 rs12411251 A C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,235:0,235:137 +1 17822155 rs11203411 A C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:352:0,110:0,0:135 +1 17822232 rs7537710 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:425:1,153:31,31:178 +1 17823852 rs4920372 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:564:0,256:69,316:307 +1 17830672 rs12118690 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:402:0,158:0,158:148 +1 17832325 rs2253863 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:490:0,221:47,266:235 +1 17833145 rs2985872 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:625:0,282:72,348:306 +1 17833411 rs2254007 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:591:84,295:14,223:160 +1 17833481 rs2254009 A T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:726:0,326:0,326:140 +1 17834742 rs2254135 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:541:0,256:46,294:233 +1 17838617 rs34641397 AT A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:546:10,277:0,267:123 +1 17839251 rs2985875 G A 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,284:0,284:165 +1 17839562 . A T 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1/0:.:246:0,0,0:0,0,0:146 +1 17839562 . AA T 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:246:0,0,0:0,0,0:146 +1 17840432 rs6661085 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:458:0,215:0,215:255 +1 17840886 rs2477731 A C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:374:0,137:39,39:354 +1 17841256 rs2243487 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:490:0,216:64,64:324 +1 17841852 rs2352803 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:423:0,172:43,43:369 +1 17843169 rs2243430 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,237:106,337:474 +1 17843880 rs2477732 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:620:0,288:56,344:331 +1 17846922 rs2244444 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:579:0,261:66,314:394 +1 17848606 rs2247276 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:415:0,187:59,233:361 +1 17848984 rs2247293 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:621:0,273:96,355:460 +1 17849207 rs2247413 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:510:0,244:34,275:287 +1 17849283 rs2247414 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:526:0,239:56,288:331 +1 17849580 rs11297025 AT A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:309:14,126:3,115:217 +1 17849760 rs2265732 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,256:72,328:373 +1 17850480 rs2247525 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:538:0,242:93,304:522 +1 17850941 . G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:342:51,61:43,30:736 +1 17851060 rs2247629 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:348:0,153:44,197:307 +1 17853107 rs2247863 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:599:0,266:85,342:443 +1 17853893 rs2247893 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:534:0,234:74,302:419 +1 17854433 rs2764885 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:421:0,180:0,180:255 +1 17854803 rs2247985 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:652:2,295:64,357:357 +1 17855642 rs2489610 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,231:95,326:458 +1 17855824 rs2248129 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:654:0,284:125,382:612 +1 17857601 rs2244300 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:624:0,279:80,340:474 +1 17858535 rs2244432 T C 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:497:64,285:0,216:335 +1 17858638 rs7549022 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,224:69,283:408 +1 17858723 rs11382089 G GC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:501:0,240:21,21:287 +1 17864514 rs2245148 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,257:82,335:431 +1 17865188 rs35238374 TA T 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:277:1,109:1,109:99 +1 17866963 rs116760294 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:439:99,86:119,117:493 +1 17867479 rs6668260 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:548:0,229:93,319:456 +1 17867774 rs6667945 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:532:0,249:48,287:350 +1 17868558 rs6663944 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:601:0,265:49,312:322 +1 17868646 rs6702914 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:528:3,235:0,215:427 +1 17868769 rs11203421 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,276:58,330:371 +1 17869550 rs2477738 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:555:0,260:54,304:338 +1 17871367 rs2764882 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:561:0,258:49,303:327 +1 17871384 rs2764881 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,254:59,307:331 +1 17872028 rs4920374 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:631:1,291:86,347:494 +1 17872355 rs4920615 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:653:0,307:71,358:449 +1 17874843 rs4920375 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,243:62,279:439 +1 17877846 rs5772762 T TC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:375:85,69:30,28:811 +1 17878011 rs3850724 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:493:105,95:154,138:1360 +1 17878619 rs1408953 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:125,134:159,179:1019 +1 17881131 rs72643594 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:408:58,74:99,110:844 +1 17882295 rs72643596 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:430:91,99:123,115:761 +1 17884357 rs17427202 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:463:110,82:148,122:1164 +1 17885381 rs72643601 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:586:124,126:164,171:877 +1 17885842 rs72648404 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:519:111,114:138,154:813 +1 17886632 rs72648405 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:124,154:157,192:811 +1 17887101 rs3850722 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:587:114,130:171,172:984 +1 17887287 rs67942162 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:433:96,92:127,116:677 +1 17887445 rs3887622 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:510:125,106:148,132:990 +1 17887963 rs2256114 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:466:111,90:145,117:648 +1 17888801 rs111507074 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:124,132:166,158:879 +1 17889051 rs55856135 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:656:151,144:185,174:1155 +1 17889732 rs55911525 CT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:352:82,98:56,86:161 +1 17889875 rs11587749 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:125,110:153,142:713 +1 17892396 rs12725975 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:111,114:148,153:1133 +1 17892816 rs2256787 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,252:84,321:466 +1 17894318 rs56676531 CTT C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:126,122:53,35:960 +1 17895744 rs2257142 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:472:88,115:120,147:718 +1 17898666 rs2246174 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:492:106,115:128,140:563 +1 17900351 rs145497449 CTG C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:493:104,105:47,22:588 +1 17900484 rs72648418 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:480:103,102:28,49:730 +1 17900523 rs2246391 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:477:0,206:81,81:370 +1 17900974 rs7516512 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:115,128:159,161:1091 +1 17901883 rs2246519 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:646:0,287:108,369:570 +1 17902550 rs1359517 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:543:0,250:63,300:374 +1 17903298 rs6702679 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:507:123,112:136,131:629 +1 17904933 rs72648420 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:700:159,167:183,190:546 +1 17905044 rs11307274 TG T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:657:154,125:50,51:1216 +1 17905163 rs4920617 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:693:145,175:174,198:864 +1 17905525 rs6678733 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:594:80,330:0,250:326 +1 17907505 rs11203423 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:106,110:170,148:1082 +1 17907575 rs11203424 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:420:94,77:119,99:523 +1 17907607 rs10749622 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:428:0,170:57,227:281 +1 17908005 rs11203425 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:437:0,197:50,242:341 +1 17909160 rs1540977 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:438:0,191:68,252:404 +1 17909501 rs4920378 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:491:0,212:52,252:352 +1 17909923 rs67585269 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:130,118:169,163:861 +1 17912997 rs5772763 CAG C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:145,121:50,43:1230 +1 17913509 rs1193346 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:475:0,218:57,260:388 +1 17913714 rs1193345 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:512:0,235:65,276:438 +1 17914484 rs1193344 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,246:46,292:317 +1 17914846 rs1193343 C T 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:324:0,136:42,42:245 +1 17915833 rs12404333 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:444:101,103:114,131:652 +1 17916382 rs4920379 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:461:98,102:129,134:1016 +1 17916919 rs10788678 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:536:124,107:165,142:940 +1 17916941 rs10888042 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:521:124,103:153,141:722 +1 17916962 rs10788679 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:550:135,105:176,135:930 +1 17917471 rs61764907 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:564:129,114:129,114:455 +1 17918063 rs2354287 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:107,129:166,179:1156 +1 17918347 rs2354288 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:578:132,130:164,153:853 +1 17918600 rs4920380 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:539:114,120:154,153:981 +1 17919036 rs1193342 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:504:1,218:73,283:402 +1 17919207 rs1193341 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:567:0,238:100,334:454 +1 17919236 rs1193340 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,231:99,320:497 +1 17920155 rs1193339 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:575:0,249:105,335:486 +1 17920327 rs72648435 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:645:133,133:126,125:1697 +1 17923847 rs72648438 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:416:96,87:110,117:633 +1 17924857 rs72648439 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:125,143:158,171:1030 +1 17929980 rs1193338 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:462:0,211:42,251:291 +1 17944934 rs139656107 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:515:100,117:132,156:753 +1 17946683 rs55970715 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:450:118,114:0,0:818 +1 17960812 rs2354289 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:521:0,224:88,292:486 +1 17964802 rs11577701 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:525:117,117:147,148:765 +1 17965194 rs2297916 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:578:127,115:141,147:766 +1 17965630 rs35596878 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:537:124,117:40,37:1051 +1 17967086 rs7518672 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:142,125:168,155:1211 +1 17968541 rs12058554 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:653:124,145:178,188:1009 +1 17969833 rs72648444 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:147,128:171,150:919 +1 17969921 rs72648446 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:579:131,123:157,169:729 +1 17973044 rs55836024 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:448:96,89:135,127:871 +1 17973072 rs56024292 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:421:92,98:116,118:479 +1 17973265 rs11579272 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:427:86,88:119,133:742 +1 17973653 rs56379452 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:118,114:166,149:898 +1 17976560 rs6703771 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:119,119:175,161:1075 +1 17976682 rs12758110 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:489:116,96:146,115:559 +1 17979118 rs10888046 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:17979118_A_G:532:118,106:168,140:793 +1 17979143 rs72648448 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|0:17979118_A_G:483:99,122:122,140:662 +1 17980433 rs12563842 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:515:126,111:149,134:508 +1 17981932 rs72238278 GTCCA G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:323:84,81:0,0:244 +1 17987817 rs55851945 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:135,123:162,167:612 +1 17991052 rs6695710 T C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_IonExomeTVC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:612:0,256:72,324:389 +1 17998920 rs17469160 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:106,137:139,162:992 +1 18000613 rs869526 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:534:118,127:134,152:894 +1 18001750 rs72648451 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:595:136,126:179,154:801 +1 18005325 rs55676323 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:624:126,140:173,175:1285 +1 18010112 rs7527509 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:459:0,206:0,202:244 +1 18017522 rs871087 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:632:0,294:70,353:417 +1 18017558 rs871088 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,298:40,314:359 +1 18017704 rs871089 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,268:61,309:428 +1 18018255 rs905390 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:669:0,312:73,370:450 +1 18018857 rs12143113 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,253:82,320:466 +1 18018927 rs12137775 G T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:493:0,214:70,284:273 +1 18019016 rs11203436 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:495:0,216:79,285:335 +1 18019207 rs11203437 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:537:0,231:96,317:494 +1 18019454 rs10788680 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:492:0,223:50,271:331 +1 18019524 rs10788681 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:613:0,277:72,334:417 +1 18019742 rs10888048 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:635:0,292:64,349:373 +1 18019861 rs2354290 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,276:60,326:386 +1 18020201 rs1339800 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:599:0,270:75,336:428 +1 18020298 rs1339801 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:576:0,270:53,316:354 +1 18021406 rs905389 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:472:0,205:76,271:426 +1 18021867 rs2279816 T C 50 PASS platforms=5;platformnames=CG,Illumina,10X,Ion,Solid;datasets=6;datasetnames=CGnormal,HiSeqPE300x,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_IonExomeTVC_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:531:0,220:85,85:513 +1 18022066 rs2279815 G T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:473:0,186:69,69:458 +1 18022285 rs35583176 T TCTG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:517:0,242:42,42:361 +1 18022489 rs10888050 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:499:26,265:0,239:264 +1 18022933 rs10788682 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:480:1,225:41,256:303 +1 18023112 rs4920619 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:503:0,228:65,282:421 +1 18023154 rs4920620 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,250:72,312:414 +1 18023290 rs2270979 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:541:0,240:76,302:436 +1 18023365 rs2270978 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:565:1,241:61,289:396 +1 18023509 rs2270977 T C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_IonExomeTVC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:503:0,215:53,266:351 +1 18023690 rs2270976 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,253:47,300:339 +1 18023877 rs11589634 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:796:137,130:30,19:663 +1 18023997 rs3835471 G GC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:596:0,251:108,108:512 +1 18024675 rs1416854 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:588:0,251:101,340:489 +1 18024775 rs5772765 GCAT G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:483:0,202:101,101:464 +1 18024880 rs1416853 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:412:0,162:77,237:410 +1 18025612 rs12023874 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:18025612_A_G:591:0,264:84,329:466 +1 18025633 rs12023877 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:18025612_A_G:613:0,275:98,346:530 +1 18026004 rs12749985 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:506:0,218:88,297:460 +1 18026277 rs28481933 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:443:0,202:55,249:360 +1 18026328 rs11203439 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:452:0,196:68,260:378 +1 18026352 rs11203440 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:450:0,195:73,258:409 +1 18026435 rs12139706 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:452:0,189:82,263:439 +1 18026725 rs11203441 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:462:0,198:86,273:456 +1 18027377 rs6586569 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:351:0,147:61,203:351 +1 18027554 rs2354291 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:338:0,152:44,185:351 +1 18027726 rs924686 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:413:0,184:69,240:416 +1 18028036 rs5772766 GT G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:426:0,189:57,57:416 +1 18028603 rs186233527 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18028603_C_T:586:137,115:169,148:643 +1 18028612 rs6694242 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:18028603_C_T:576:0,248:66,314:543 +1 18029325 rs72648466 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:344:65,82:86,106:574 +1 18031086 rs7518251 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:470:107,94:31,24:611 +1 18031123 rs7547291 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:542:112,110:53,40:989 +1 18031218 rs7515661 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:443:96,97:120,127:607 +1 18033213 rs11203443 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:143,123:189,145:710 +1 18033499 rs7522419 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:495:118,101:151,121:875 +1 18034588 rs7528432 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:594:0,275:66,325:433 +1 18035553 rs1811694 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:508:0,236:43,279:300 +1 18036167 rs35957915 A AG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:673:1,294:89,89:513 +1 18036864 rs905394 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:500:1,231:58,278:321 +1 18036908 rs905393 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:591:1,247:116,349:484 +1 18037324 rs4920623 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,241:97,324:440 +1 18038560 rs4920624 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,266:94,341:497 +1 18039182 rs6664873 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:657:1,284:107,384:510 +1 18040196 rs10888052 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:380:0,126:72,72:426 +1 18040365 rs10888053 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:541:0,241:53,292:334 +1 18040826 rs905395 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,264:89,332:513 +1 18042747 rs6682945 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:496:0,203:99,298:432 +1 18042912 rs10788684 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:387:7,133:3,123:371 +1 18043684 rs11403276 G GT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1/1:.:367:3,175:0,0:259 +1 18043943 rs4920625 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,242:62,288:407 +1 18044374 rs6687077 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:138,99:186,123:816 +1 18044666 rs6586572 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:463:0,203:75,264:420 +1 18045236 rs61764946 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:544:125,115:160,146:760 +1 18045852 rs150879202 CGGGGGCTGGATATGTTGCT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:412:106,85:51,27:702 +1 18046287 rs4920626 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:643:159,115:212,155:1151 +1 18046735 rs147325116 C CTAGGCCTTTT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,222:103,103:434 +1 18046846 rs61764948 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:501:108,113:136,146:685 +1 18047393 rs4920627 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:470:0,215:53,259:268 +1 18048610 rs2016040 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:639:171,148:168,157:518 +1 18048668 rs16830671 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:134,117:181,152:993 +1 18048935 rs7534686 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:117,125:153,174:951 +1 18050373 rs10888058 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:18050373_T_G:538:0,251:54,294:369 +1 18050397 rs6674989 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:18050373_T_G:535:0,242:69,303:389 +1 18050438 rs6675004 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:516:0,231:81,300:408 +1 18051311 rs12029806 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:378:0,157:67,221:392 +1 18052054 rs260515 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,246:125,366:515 +1 18052645 rs260514 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:546:0,234:85,313:409 +1 18054323 rs6703085 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:309:0,119:0,0:250 +1 18058483 rs375987778 TAC T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:298:62,71:0,0:259 +1 18069118 rs260524 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:485:1,229:61,267:419 +1 18110105 rs56041930 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:617:144,145:167,164:931 +1 18110701 rs260519 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:638:141,140:173,192:1148 +1 18110746 rs55790838 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:543:132,102:168,148:1270 +1 18112065 rs1599970 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:633:140,146:163,181:1030 +1 18112707 rs59710972 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:620:139,122:188,172:1322 +1 18114205 rs55857489 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:739:168,141:0,0:1579 +1 18119478 rs260525 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:130,129:161,167:973 +1 18119601 rs1578215 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:126,111:185,166:1289 +1 18120043 rs7536978 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:642:119,145:185,192:1309 +1 18120718 rs4920639 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18120718_T_A:578:114,136:140,183:1155 +1 18120719 rs4920640 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18120718_T_A:573:112,133:139,182:1155 +1 18122009 rs4141983 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:700:158,157:39,43:1195 +1 18122020 rs6697900 T A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:690:162,152:36,37:1225 +1 18122084 rs6695001 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:646:133,142:53,52:1409 +1 18122523 rs6695427 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:443:88,112:120,125:566 +1 18122629 rs11203463 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:434:94,104:99,126:521 +1 18122801 . C CTGTG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:317:0,79,82:0,0,0:259 +1 18122801 . CTGTGTGTGTG C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:317:0,79,82:0,0,0:259 +1 18122939 rs4920382 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18122939_T_C:503:98,122:127,162:839 +1 18122943 rs4920383 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18122939_T_C:502:95,124:125,163:879 +1 18123132 rs4920384 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:454:102,114:101,112:361 +1 18123332 rs4920385 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:574:137,123:157,157:932 +1 18123443 rs12406582 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:504:119,89:137,113:741 +1 18123461 rs4920386 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:496:113,87:133,111:822 +1 18123583 rs10489771 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:469:82,105:108,153:694 +1 18123655 rs12405819 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:502:77,125:26,42:688 +1 18123685 rs12406895 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:551:88,146:36,28:719 +1 18123782 rs1847234 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:117,133:153,168:1046 +1 18123957 rs1847235 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:635:127,153:169,191:1144 +1 18124164 rs1578383 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:18124164_C_T:517:109,118:39,36:1120 +1 18124165 rs1578384 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:18124164_C_T:517:110,117:39,36:1120 +1 18124294 rs4920387 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:588:116,122:108,114:1276 +1 18124416 rs4920641 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:103,127:139,154:811 +1 18124656 rs142672643 T TGCGAAGCCGTGAAATGTGCAGTGAAACTAA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:473:90,97:41,78:566 +1 18124704 rs16830759 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:466:96,99:46,40:1146 +1 18125179 rs7552919 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:135,122:182,167:1041 +1 18125529 rs7553237 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:678:157,158:176,188:1075 +1 18125733 rs11582475 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:128,127:171,162:793 +1 18125862 rs11582979 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:697:160,162:39,36:971 +1 18125909 rs79883039 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:18125909_T_G:700:147,162:52,41:1146 +1 18125919 rs7539153 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:18125909_T_G:729:144,173:45,60:1294 +1 18126067 rs6586582 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:690:166,152:200,181:929 +1 18126105 rs67783275 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:669:133,146:186,209:1151 +1 18126291 rs72648490 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:578:130,137:148,164:898 +1 18126465 rs6586583 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:137,145:176,185:1256 +1 18126701 rs34094709 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:138,146:165,164:739 +1 18127257 rs11583553 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:520:122,94:163,140:1096 +1 18127277 rs11583569 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:121,108:168,155:1097 +1 18127306 rs11583571 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:112,108:151,160:826 +1 18127755 rs11581277 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:737:187,164:207,181:972 +1 18128412 rs72648491 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:669:143,162:170,194:1031 +1 18128532 rs4920642 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:713:162,169:182,199:1147 +1 18128752 rs4920643 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:144,119:180,164:1002 +1 18128791 rs4920644 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:128,116:160,146:945 +1 18128919 . C CGTGTGTGT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:245:62,56:0,0:150 +1 18129690 rs111340469 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:539:99,134:152,150:453 +1 18129702 rs111263896 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:148,161:108,138:606 +1 18130376 rs72648492 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:657:149,132:201,176:1250 +1 18130400 rs67072575 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:137,132:188,177:1384 +1 18130923 rs11203466 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:599:124,142:56,42:1041 +1 18130969 rs11203467 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18130969_G_C:547:110,133:30,35:878 +1 18130970 rs11203468 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18130969_G_C:548:110,134:30,35:878 +1 18132269 rs500035 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:117,162:138,178:944 +1 18132600 rs560516 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18132600_C_T:683:154,172:181,189:1030 +1 18132601 rs560514 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18132600_C_T:683:154,172:181,189:1030 +1 18132765 rs634658 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:692:157,162:185,187:1284 +1 18133158 rs555179 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:477:97,109:128,142:693 +1 18133186 rs555106 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18133186_A_G:494:111,116:135,141:1068 +1 18133190 rs632892 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18133186_A_G:504:112,119:141,144:1086 +1 18133242 rs554356 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:501:113,111:153,128:548 +1 18133256 rs632487 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:490:108,116:136,136:534 +1 18133817 rs512134 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:136,110:152,127:699 +1 18134877 rs481529 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:658:156,145:179,177:1521 +1 18135882 rs561698 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:583:128,124:174,157:1005 +1 18136145 rs559071 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:145,105:185,151:1035 +1 18136684 rs533374 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:140,129:170,165:1147 +1 18137610 rs503393 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:786:161,207:190,228:1148 +1 18138177 rs480231 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:801:194,174:230,208:1081 +1 18138214 rs650246 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:752:185,165:223,183:661 +1 18138429 rs566992 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:122,116:149,143:689 +1 18138517 rs112469591 T TC 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:18138517_T_TC:354:184,170:141,131:875 +1 18138518 rs12136011 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:18138517_T_TC:357:184,173:141,134:875 +1 18139439 rs634208 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:754:176,169:216,192:851 +1 18141453 rs604800 G A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18141453_G_A:813:262,179:262,179:198 +1 18141471 rs515315 T C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18141453_G_A:819:266,171:266,171:198 +1 18142636 rs554555 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:736:154,165:175,205:943 +1 18143674 rs508571 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:721:158,143:150,141:1298 +1 18144014 rs505094 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:490:118,98:147,125:900 +1 18145098 rs473648 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:121,119:152,156:1365 +1 18148194 rs649270 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:635:132,149:166,186:825 +1 18148751 rs11388795 C CT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:665:156,153:37,28:940 +1 18149510 rs694214 G T 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:721:128,136:165,177:1251 +1 18149566 rs2296035 C A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:652:126,115:156,149:960 +1 18150298 rs523919 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:611:164,181:124,142:1020 +1 18150330 rs619993 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:576:123,132:149,163:797 +1 18151847 rs485291 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:148,144:171,154:724 +1 18152582 rs478698 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:685:122,144:144,179:959 +1 18153993 rs681507 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:685:139,175:151,217:952 +1 18155405 rs648305 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:753:184,157:215,193:1296 +1 18157849 rs472480 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:133,116:143,143:840 +1 18159495 rs685987 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:565:131,122:159,156:982 +1 18159533 rs708090 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,242:65,297:336 +1 18160133 rs683259 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:117,137:158,197:1418 +1 18161596 rs4920645 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:494:109,106:152,129:1059 +1 18161802 rs480078 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:558:132,134:24,35:856 +1 18162557 rs473444 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:127,133:169,167:1054 +1 18163593 rs498244 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:567:122,131:32,29:656 +1 18163922 rs495347 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:618:112,142:149,187:930 +1 18164047 rs510146 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:122,120:157,142:773 +1 18164131 rs624178 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:468:141,123:88,88:750 +1 18164285 rs491778 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:117,140:163,175:1189 +1 18165170 rs573493 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:136,136:163,151:919 +1 18165276 rs689107 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:595:121,141:157,164:1062 +1 18165400 rs688657 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:116,136:155,170:1221 +1 18165971 rs560682 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:116,136:143,165:917 +1 18166092 rs543373 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:670:149,143:194,180:1383 +1 18166294 rs541580 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:525:122,116:149,135:774 +1 18166710 rs516736 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:475:105,134:65,93:534 +1 18166952 rs514811 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:410:70,62:34,23:662 +1 18171131 rs11345545 GA G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:356:0,156:38,38:365 +1 18172269 rs146988771 A ATG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:331:2,164:0,0:249 +1 18175964 rs613098 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,253:76,319:422 +1 18177098 rs72651104 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:525:93,126:138,168:934 +1 18177471 rs576091 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:98,135:133,156:830 +1 18178598 rs696043 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:542:127,107:165,143:982 +1 18178687 rs696323 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:481:120,95:145,115:474 +1 18178747 rs1763482 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18178747_C_T:499:110,98:154,133:909 +1 18178752 rs1763483 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18178747_C_T:504:111,104:149,137:1047 +1 18179276 rs696324 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:125,133:164,169:1135 +1 18179337 rs697758 A T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:569:115,137:0,0:831 +1 18179375 rs56183575 CT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:505:105,108:0,0:296 +1 18179431 rs708095 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:631:143,128:175,163:736 +1 18179612 rs697759 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:120,118:186,158:1067 +1 18179816 rs697760 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:139,127:173,169:1042 +1 18180172 rs1771321 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:18180172_G_A:656:145,153:42,36:1009 +1 18180177 rs1769903 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:18180172_G_A:641:143,152:34,33:948 +1 18180387 rs708096 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:479:116,107:129,121:433 +1 18180640 rs696325 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:128,126:138,142:739 +1 18180809 rs696326 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:507:110,110:143,146:849 +1 18182265 rs576200 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:486:98,91:151,138:1204 +1 18182568 rs612480 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:579:115,99:115,99:853 +1 18183104 rs529557 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:468:0,214:48,259:329 +1 18183234 rs527955 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:115,105:171,153:1011 +1 18183424 rs647619 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:493:101,113:131,144:985 +1 18183580 rs2008310 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:161,119:207,160:1180 +1 18184082 rs483581 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:462:0,182:72,254:386 +1 18187931 rs67998296 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:510:116,123:136,132:701 +1 18188667 rs56407264 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:145,134:189,178:1068 +1 18189665 rs147306313 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:118,135:163,184:1046 +1 18190376 rs78744609 T A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18190373_C_CA:634:134,144:50,45:1391 +1 18192462 rs55660227 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:118,127:151,171:814 +1 18193604 rs587276 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:109,153:156,190:1148 +1 18193640 rs72651111 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:647:122,180:147,205:1178 +1 18196223 rs5772770 C CA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:18196223_C_CA:344:152,120:36,35:805 +1 18196225 rs34051191 A AC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=3;callsetnames=CGnormal,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1|0:18196223_C_CA:345:120,146:37,35:784 +1 18196386 rs61522414 T TCA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:129,145:43,45:1148 +1 18196406 rs55772033 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:125,162:40,36:1089 +1 18196679 rs11438877 G GT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:470:0,205:52,52:447 +1 18196691 rs11203221 G C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:113,110:42,24:800 +1 18196727 rs11203222 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:117,128:38,33:1051 +1 18196800 rs11203223 T G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18196800_T_G:525:100,102:45,44:1160 +1 18196820 rs59396259 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=3;callsetnames=CGnormal,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0|1:18196800_T_G:249:94,97:20,32:638 +1 18196821 . C CT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=3;callsetnames=CGnormal,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0|1:.:248:0,93,97:20,32,0:638 +1 18196821 . C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=3;callsetnames=CGnormal,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1|0:.:248:0,93,97:20,32,0:638 +1 18197443 rs55815271 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:563:132,124:34,28:660 +1 18197467 rs56019919 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:584:132,136:32,36:835 +1 18197488 rs56183098 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:620:139,147:43,33:741 +1 18197569 rs10465787 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:635:152,135:142,130:607 +1 18197652 rs57658984 A AG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,284:30,30:351 +1 18197962 rs12041423 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18197962_G_A:613:132,129:175,168:1062 +1 18197967 rs618124 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18197962_G_A:617:134,128:172,167:967 +1 18198103 rs7515019 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:615:145,131:32,24:660 +1 18198187 rs7517456 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:713:162,165:192,186:1109 +1 18198983 rs10465786 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:628:140,148:166,173:924 +1 18199652 rs588987 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:128,131:173,160:697 +1 18199828 rs912103 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:499:113,111:130,136:920 +1 18199860 rs72651115 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:118,121:142,167:1029 +1 18200018 rs912102 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:695:146,151:189,208:1203 +1 18200862 rs681146 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:650:138,153:173,187:1394 +1 18201633 rs11203224 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:118,120:155,157:1067 +1 18201707 rs666776 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:537:126,110:160,140:967 +1 18202181 rs7538231 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:122,131:159,160:967 +1 18203380 rs578987 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:137,134:167,146:948 +1 18203479 rs72651116 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:494:113,116:127,128:591 +1 18204026 rs2027366 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:117,124:159,173:1171 +1 18204693 rs11344731 AG A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:111,112:33,26:558 +1 18204907 rs622590 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18204907_C_T:700:138,133:136,130:1472 +1 18204929 rs12045917 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18204907_C_T:691:133,137:133,137:1476 +1 18205743 rs608651 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:429:99,75:142,110:825 +1 18206075 rs491145 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:511:115,104:29,52:735 +1 18206534 rs6671954 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:543:119,107:174,141:790 +1 18208828 rs72651118 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:645:144,138:40,28:765 +1 18208881 rs11369946 A AT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:484:1,236:0,0:245 +1 18209061 rs654233 T A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:424:0,214:0,214:198 +1 18209443 rs642054 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:511:112,122:139,140:459 +1 18209522 rs485737 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:18209522_A_G:510:0,236:55,281:346 +1 18209544 rs640714 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:18209522_A_G:498:0,229:52,274:362 +1 18209726 rs10577490 ACTGC A 50 PASS platforms=3;platformnames=CG,Illumina,Solid;datasets=3;datasetnames=CGnormal,HiSeqPE300x,SolidSE75bp;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:469:0,226:35,35:265 +1 18212230 rs597865 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:483:104,114:125,143:1159 +1 18212704 rs579987 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18212704_A_G:482:103,110:135,148:924 +1 18212707 rs579985 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18212704_A_G:473:96,109:130,144:1001 +1 18212804 rs11203225 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:464:100,109:126,127:659 +1 18213211 rs575598 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:112,120:169,163:1032 +1 18213890 rs12126668 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:105,106:128,140:732 +1 18214393 rs4920647 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:499:93,117:45,38:895 +1 18214704 rs60681022 T TC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:94,127:43,46:1163 +1 18214811 . C A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:189:0,0:0,0:155 +1 18214812 . AG A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:189:0,0:0,0:155 +1 18216414 rs658532 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:490:125,96:160,113:398 +1 18216603 rs34482377 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:443:101,108:107,125:539 +1 18217210 rs12029029 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:390:79,86:113,112:811 +1 18217543 rs642862 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:485:116,106:130,132:648 +1 18217863 rs12144760 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:465:109,93:133,111:378 +1 18219436 rs11577310 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:547:140,111:168,133:901 +1 18219827 rs477558 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:538:124,111:162,140:826 +1 18219856 rs34511986 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:502:119,96:161,122:964 +1 18219905 rs476700 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18219905_A_G:445:100,89:143,106:497 +1 18219924 rs694453 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:18219905_A_G:441:136,112:101,92:616 +1 18220660 rs657680 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:126,125:158,147:620 +1 18220786 rs678648 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:128,120:165,157:1011 +1 18221207 rs676414 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:139,105:172,125:522 +1 18221883 rs566599 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:526:116,128:30,22:672 +1 18222257 rs56244918 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:487:108,104:132,132:744 +1 18222334 rs12034026 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:520:138,154:0,0:1030 +1 18222341 rs71687189 TTGTG T 50 PASS platforms=2;platformnames=Illumina,Solid;datasets=2;datasetnames=HiSeqPE300x,SolidSE75bp;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,10,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:368:76,118:0,0:259 +1 18224794 rs476624 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:790:165,187:204,236:1369 +1 18225521 rs12037123 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:773:235,217:163,160:1224 +1 18225733 rs12025192 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:776:161,185:209,225:1120 +1 18226012 rs2354847 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:678:153,152:183,190:1078 +1 18226095 rs2354848 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:688:165,157:40,34:1084 +1 18226140 rs2354849 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:737:172,164:41,29:877 +1 18227472 rs4920395 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:703:164,164:191,176:451 +1 18227593 rs4920650 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:790:182,176:228,204:1066 +1 18227647 rs4920396 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:686:153,142:203,190:1313 +1 18227960 rs1578238 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:759:178,175:204,210:960 +1 18228861 rs679002 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:611:140,127:180,162:1029 +1 18228970 rs682475 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:718:177,165:195,182:976 +1 18230057 rs667114 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18230057_C_T:653:143,149:178,191:1447 +1 18230058 rs544165 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18230057_C_T:653:144,148:179,190:1447 +1 18230535 rs510896 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:143,130:171,157:1130 +1 18231050 rs506282 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:514:136,103:144,125:648 +1 18231328 rs620570 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:147,114:207,159:1100 +1 18232232 rs1316872 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:462:107,91:141,120:1144 +1 18232473 rs4920651 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:468:0,201:71,265:414 +1 18233892 rs6691017 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:709:136,171:177,223:1224 +1 18234111 rs1953425 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:129,137:162,176:1104 +1 18234374 rs12071205 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:641:128,149:168,202:1108 +1 18234403 rs12085252 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:652:137,153:182,186:1071 +1 18234542 rs12085303 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:655:142,135:209,170:1181 +1 18234691 rs11203230 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:665:154,133:200,179:1420 +1 18234987 rs7547402 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:620:131,138:168,183:1091 +1 18235505 rs143644055 T TTA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:132,134:63,40:962 +1 18235935 rs4920652 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:665:152,148:181,188:1348 +1 18236459 rs1339934 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,270:94,349:411 +1 18236619 rs7524159 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:130,157:166,178:793 +1 18236681 rs954627 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:652:132,141:173,199:966 +1 18237585 rs10887976 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:522:118,95:164,132:830 +1 18237639 rs111659000 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18237639_T_A:443:89,89:107,112:614 +1 18237660 rs11203231 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18237639_T_A:416:75,81:99,100:567 +1 18238008 rs59292770 CT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:550:109,140:26,28:730 +1 18238675 rs80226038 AT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:556:118,130:36,28:648 +1 18238697 rs68174713 T G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:646:144,147:45,28:941 +1 18238995 rs36075730 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:578:122,137:158,166:1105 +1 18239046 rs11804576 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:116,122:159,171:1504 +1 18239212 rs1339935 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:587:131,135:162,160:800 +1 18239757 rs60889802 CCTA C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:109,117:28,21:851 +1 18240000 rs11203232 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:567:130,118:161,156:932 +1 18240660 rs139065909 GTGA G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:114,123:40,35:1058 +1 18240697 rs11203233 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:115,128:50,67:1306 +1 18240899 rs2152390 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:459:0,203:72,261:432 +1 18241271 rs946737 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:507:0,245:56,270:372 +1 18241309 rs12087706 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:517:117,123:139,138:940 +1 18242304 rs7531345 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:94,120:135,169:1253 +1 18242493 rs12089138 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:141,147:168,196:1189 +1 18242820 rs7534142 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,269:77,317:491 +1 18242866 rs7545682 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:611:138,136:165,171:1287 +1 18243980 rs12133875 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:595:132,141:151,167:1160 +1 18244086 rs11203235 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:655:142,148:60,33:771 +1 18244313 rs55825892 CT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:567:131,123:28,27:791 +1 18244707 rs6686929 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,249:78,322:396 +1 18244913 rs1890787 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:472:0,203:78,270:412 +1 18245365 rs12083022 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:563:120,138:38,32:1014 +1 18245540 rs7541126 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:159,133:187,157:1107 +1 18245670 rs12071875 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:104,122:153,167:1079 +1 18245956 rs1361282 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:126,135:180,172:876 +1 18246140 rs12073092 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:135,129:167,149:855 +1 18247287 rs12033416 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:583:115,119:72,52:1271 +1 18247811 rs7554885 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:583:118,146:148,177:1164 +1 18248070 rs2225771 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:497:106,115:132,149:883 +1 18249640 rs1537773 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:680:138,156:174,211:1302 +1 18249743 rs12092756 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:152,109:199,145:1075 +1 18249964 rs112662795 C CCT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:505:103,120:30,31:812 +1 18250135 rs1124720 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:488:102,106:144,136:690 +1 18250822 rs369213050 TATCCATCC T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:310:81,82:0,0:259 +1 18250888 rs999062 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:514:0,232:74,290:377 +1 18252243 rs999194 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:585:144,118:170,155:602 +1 18252272 rs999193 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:139,115:165,138:569 +1 18253161 rs17430446 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:127,110:163,151:1304 +1 18253743 rs883136 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:478:107,95:130,141:959 +1 18253971 rs883137 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:108,117:147,175:1149 +1 18254238 rs676285 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:18254238_T_C:488:1,213:1,211:671 +1 18254239 rs1416402 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18254238_T_C:486:104,108:104,108:662 +1 18254353 rs883862 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:440:0,188:69,254:403 +1 18256248 rs12037115 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:697:158,165:177,192:961 +1 18256842 rs611099 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:583:0,270:75,326:413 +1 18257021 rs10887977 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:551:116,132:152,156:946 +1 18257178 rs4920397 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:121,138:169,186:1141 +1 18257264 rs4920398 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:637:143,145:172,186:1177 +1 18258279 rs66492203 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:652:173,126:43,28:804 +1 18258305 rs11203239 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:663:172,134:51,30:851 +1 18258653 rs629525 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:616:0,275:88,350:455 +1 18258744 rs11203240 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,256:54,307:332 +1 18259243 rs642351 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:634:0,293:79,350:432 +1 18259463 rs10788647 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:123,132:155,170:893 +1 18260624 rs11203241 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:154,123:182,143:726 +1 18260770 rs670042 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:519:0,225:76,296:422 +1 18260990 rs55984408 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:621:142,148:163,166:657 +1 18261514 rs6672762 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:693:161,142:207,183:1040 +1 18261837 rs11203242 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:141,138:161,159:924 +1 18262346 . T TTCCATCCA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:226:59,52:0,0:245 +1 18263230 . T TTATC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:283:0,78,71:0,0,0:259 +1 18263230 . T TTATCTATCTATC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:283:0,78,71:0,0,0:259 +1 18263447 rs12089009 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:136,118:153,145:985 +1 18263510 rs12089039 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:138,123:155,146:993 +1 18263784 rs623276 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:110,126:139,138:1027 +1 18264357 rs794055 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:122,139:151,171:783 +1 18265674 rs609208 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:108,130:142,167:853 +1 18265974 rs620950 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:624:140,163:150,175:655 +1 18266431 rs655468 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18266431_G_A:581:130,138:154,156:670 +1 18266455 rs756256 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18266431_G_A:585:126,132:165,163:778 +1 18267300 rs636840 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:120,126:169,167:1266 +1 18268281 rs651743 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:136,144:154,169:872 +1 18268405 rs652234 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:732:161,161:203,200:1371 +1 18268687 rs653561 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:682:168,158:192,168:1049 +1 18268831 rs654052 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:680:163,139:36,35:846 +1 18268855 rs139316898 C CCTT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:618:153,135:25,18:508 +1 18269273 rs666394 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:666:144,152:172,195:1127 +1 18269948 rs604673 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:520:129,120:136,135:529 +1 18270328 rs681366 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:119,151:132,166:501 +1 18270627 rs7525228 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:616:143,143:28,31:785 +1 18271748 rs1150903 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:148,122:188,145:1037 +1 18272751 rs661977 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:477:102,123:118,133:700 +1 18273469 rs618747 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:420:90,80:131,110:662 +1 18273842 rs7551015 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:472:105,100:137,120:656 +1 18274217 rs614211 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:145,113:162,134:862 +1 18274419 rs11203243 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:501:76,126:127,165:854 +1 18274898 rs1192586 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:532:101,129:28,36:818 +1 18275000 rs1769893 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:456:100,96:133,122:804 +1 18276565 rs35919248 AT A 50 PASS platforms=2;platformnames=Illumina,Solid;datasets=2;datasetnames=HiSeqPE300x,SolidSE75bp;callsets=2;callsetnames=HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.,10,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:172:0,170:0,167:108 +1 18276580 rs1150904 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:273:73,273:0,197:352 +1 18276901 rs11203244 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:489:143,111:106,77:874 +1 18277480 rs659810 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:133,133:143,169:564 +1 18278257 rs673567 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:114,113:152,139:920 +1 18279185 rs709362 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:481:0,214:60,260:371 +1 18279309 rs56080535 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:410:93,103:90,119:608 +1 18280034 rs794226 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:368:0,154:61,213:363 +1 18280576 . AAAATAAAT A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:280:0,70,88:0,0,0:247 +1 18280576 . AAAATAAATAAAT A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:280:0,70,88:0,0,0:247 +1 18281617 rs1192584 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,240:108,343:501 +1 18282095 rs1192583 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:622:0,295:75,334:498 +1 18282311 rs1192582 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:497:0,233:47,271:350 +1 18282472 rs6676474 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:136,140:164,166:915 +1 18282599 rs1192581 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:596:0,266:78,334:425 +1 18283425 rs11203245 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:102,129:137,156:1180 +1 18283542 rs1192580 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,251:64,302:403 +1 18283857 rs1192579 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:623:0,280:102,352:548 +1 18284258 rs11203246 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:140,120:164,140:729 +1 18284376 rs1192578 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:619:0,275:93,353:488 +1 18284807 rs1192577 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,248:88,321:463 +1 18285216 rs1192576 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,237:88,300:470 +1 18285319 rs1192575 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,254:69,290:490 +1 18285358 rs1192574 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:522:0,229:84,302:453 +1 18286068 rs1192573 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:623:0,268:98,360:472 +1 18286496 rs1192571 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,301:69,346:466 +1 18287000 rs1192570 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:503:0,220:93,294:467 +1 18288318 rs794228 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:543:140,100:167,131:1142 +1 18288711 rs1192568 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:568:0,224:100,318:469 +1 18289233 rs794229 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18289233_G_T:633:145,156:163,173:1095 +1 18289252 rs794230 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:18289233_G_T:613:0,281:94,343:587 +1 18289666 rs794231 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:623:0,277:98,355:515 +1 18290341 rs794232 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,261:80,80:401 +1 18290367 rs5772782 CG C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:556:130,126:25,25:756 +1 18290812 rs794233 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:575:0,249:87,326:459 +1 18290895 rs1211531 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:598:1,268:73,329:417 +1 18291014 rs3128752 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:18291014_G_T:572:0,261:82,331:423 +1 18291024 rs3128753 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:18291014_G_T:546:0,244:78,311:440 +1 18291277 rs1192567 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:656:0,301:74,366:399 +1 18291399 rs1192566 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:675:0,300:77,375:394 +1 18291552 rs1192565 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:476:0,199:44,243:304 +1 18291912 rs1192564 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:530:2,256:39,288:306 +1 18292040 rs71724106 CCAG C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:536:0,220:0,0:346 +1 18292067 rs199892026 AAATAAATAAATAAAT A 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:437:77,99:0,0:284 +1 18292324 rs1192563 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,258:69,313:430 +1 18292373 rs1192562 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:523:0,246:40,286:269 +1 18292757 rs1192561 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:515:117,111:155,132:738 +1 18292763 rs1192560 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:497:0,228:55,276:439 +1 18292801 rs1192559 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,228:85,308:447 +1 18293097 rs3073043 T TCTC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:484:0,223:62,62:417 +1 18293127 rs1192558 C A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:562:1,253:70,70:479 +1 18293258 rs1192557 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:519:0,237:70,295:397 +1 18293455 rs1192556 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:474:0,211:67,264:415 +1 18293491 rs1192555 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:501:0,221:83,292:462 +1 18293592 rs1192554 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:541:0,254:54,296:369 +1 18293736 . G GATTC 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/0:.:221:0,0,0:0,0,0:145 +1 18293736 . G GATTCATTC 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:221:0,0,0:0,0,0:145 +1 18293760 . T C 50 PASS platforms=2;platformnames=Illumina,Solid;datasets=2;datasetnames=HiSeqPE300x,SolidPE50x50bp;callsets=2;callsetnames=HiSeqPE300xfreebayes,SolidPE50x50GATKHC;datasetsmissingcall=.,.,10,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:267:0,0:0,0:172 +1 18294352 rs1192553 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:543:0,252:68,296:430 +1 18295359 . GTATTA G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:345:0,94,111:0,0,0:242 +1 18295359 . GTATTATATTATATTA G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:345:0,94,111:0,0,0:242 +1 18296015 rs1192552 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:671:155,157:186,175:976 +1 18296921 rs112963691 GCATCCATC G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:272:56,75:0,0:259 +1 18297271 rs1192551 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:532:0,236:57,293:342 +1 18298961 rs1192550 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:514:0,244:46,279:347 +1 18299375 . T TTTATTATTATTA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:311:0,72,87:0,0,0:259 +1 18299375 . TTTA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:311:0,72,87:0,0,0:259 +1 18300232 rs946372 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:729:0,329:119,422:647 +1 18300253 rs1192549 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:717:171,145:209,197:1372 +1 18302321 rs56179617 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:92,103:140,137:940 +1 18303797 rs1192634 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:583:115,127:159,178:1492 +1 18304543 rs1192633 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,290:53,323:392 +1 18304865 rs1192632 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:644:0,288:83,362:372 +1 18305001 rs1192631 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:633:1,276:99,371:471 +1 18305098 rs12031698 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:550:124,110:35,18:555 +1 18305292 rs1192630 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:652:0,302:72,366:376 +1 18305387 rs1192629 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:707:167,150:204,184:923 +1 18305635 rs1192628 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:641:0,306:76,343:523 +1 18306081 rs12037120 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:589:119,140:151,173:827 +1 18306691 rs11579730 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:137,130:170,170:1026 +1 18307682 rs7414500 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:616:0,283:78,338:465 +1 18307823 rs34684159 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:691:155,131:145,127:1421 +1 18308055 rs17471689 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:699:156,159:203,184:929 +1 18308190 rs1211228 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:619:0,267:96,359:424 +1 18308709 rs12731470 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:628:140,140:177,170:946 +1 18310226 rs6669283 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:126,111:162,148:1160 +1 18310576 rs1192607 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:557:125,118:159,162:1117 +1 18311140 rs6685120 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:133,133:170,170:1215 +1 18312844 rs1192608 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,222:87,303:454 +1 18313317 rs1192609 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:441:95,88:126,133:893 +1 18313386 rs7533732 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:417:75,90:104,140:921 +1 18313637 rs72651195 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:464:103,91:147,126:1163 +1 18317078 rs4378244 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:700:0,329:80,377:517 +1 18317841 rs12726822 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:663:147,151:184,181:1152 +1 18318879 rs1769845 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:680:0,309:77,373:453 +1 18319853 rs1192612 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:482:114,108:132,130:777 +1 18321917 rs144553652 ATTTAT A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,260:82,82:466 +1 18322260 rs4920406 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:1,254:71,305:427 +1 18323910 rs11203252 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:141,126:166,159:1275 +1 18324558 rs16861382 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:726:230,187:169,145:982 +1 18325257 rs12022529 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:659:155,156:162,184:647 +1 18325396 rs12041041 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:122,118:154,157:736 +1 18325569 rs12040358 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:499:104,127:27,31:861 +1 18325601 rs1192614 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:468:0,215:58,58:381 +1 18325885 rs11203253 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:500:109,109:133,148:613 +1 18326306 rs12093627 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:542:139,118:19,32:660 +1 18326747 rs1192615 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:662:0,292:100,374:532 +1 18327209 rs1192616 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:531:1,212:105,302:403 +1 18327312 rs1767886 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18327312_C_T:549:122,116:164,150:1187 +1 18327313 rs1767887 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18327312_C_T:551:123,117:165,150:1187 +1 18327378 rs1192617 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,230:75,287:440 +1 18327643 rs10443203 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18327643_C_T:484:93,114:121,146:1045 +1 18327645 rs12047497 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|0:18327643_C_T:487:116,92:149,123:1003 +1 18328118 . T TCAA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:321:0,85,74:0,0,0:259 +1 18328118 . T TCAACAA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:321:0,85,74:0,0,0:259 +1 18328283 rs10685929 A ACT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:487:0,218:65,65:455 +1 18328408 rs61761435 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:543:108,114:156,161:1316 +1 18328851 rs1767889 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,246:78,308:449 +1 18329048 rs1769847 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:480:0,201:83,277:444 +1 18329240 rs113794322 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:449:96,96:25,28:677 +1 18329476 rs57911215 C CAAA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:213:40,38:40,38:198 +1 18329802 rs56247212 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:109,122:149,173:1203 +1 18330010 rs35655257 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,239:92,303:530 +1 18331242 rs1192610 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:119,124:149,158:1026 +1 18331332 rs1890789 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:127,107:157,142:917 +1 18331462 rs11203255 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:630:132,146:174,178:971 +1 18331592 rs4433436 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:556:121,121:45,47:1183 +1 18332188 rs12087126 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:133,121:163,162:967 +1 18332902 rs56274414 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:618:121,149:45,54:1128 +1 18333802 rs113697603 A AAAAG 50 PASS platforms=2;platformnames=Illumina,Solid;datasets=2;datasetnames=HiSeqPE300x,SolidSE75bp;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,10,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:469:0,235:0,0:156 +1 18333824 rs201296157 AAAG A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:512:118,143:0,0:259 +1 18333836 rs794241 T C 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:526:0,265:0,0:274 +1 18333892 rs3073068 G GAAAA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:492:132,107:132,107:198 +1 18335068 rs17432169 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:112,117:151,143:830 +1 18335219 rs794240 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:513:0,213:79,292:392 +1 18335898 rs1213030 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,254:81,333:405 +1 18335916 rs6678740 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:594:0,262:83,334:453 +1 18336903 rs1192618 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:634:0,284:91,345:518 +1 18337129 rs1192619 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:145,116:187,151:1116 +1 18337212 rs1192620 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:644:0,295:76,350:418 +1 18337250 rs1192621 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:659:153,147:179,179:1121 +1 18337268 rs1192622 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:694:0,304:113,393:578 +1 18337438 rs12023927 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:142,133:172,161:822 +1 18337520 rs1192623 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:620:0,281:70,339:422 +1 18337611 rs61761439 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:132,139:166,172:1041 +1 18338144 rs17432239 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:615:144,139:173,165:1119 +1 18338418 rs1192624 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:539:1,262:49,279:391 +1 18338598 rs6686302 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:146,146:173,178:803 +1 18339748 rs6586487 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:623:147,138:190,143:601 +1 18339791 rs1192625 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:583:0,294:36,302:374 +1 18339989 rs1192626 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:607:0,277:81,342:435 +1 18340025 rs17472583 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:604:123,140:156,187:1003 +1 18340225 rs11203256 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:640:150,142:172,172:846 +1 18340495 rs17472611 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:643:121,162:162,207:1391 +1 18340663 rs794239 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:134,141:159,172:1070 +1 18341457 rs4375304 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:130,135:154,170:865 +1 18341942 rs7551671 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:518:109,117:144,148:1029 +1 18342368 rs794238 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:447:99,109:0,0:370 +1 18342964 rs794237 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:497:0,214:90,291:484 +1 18343551 rs875294 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:135,135:168,153:829 +1 18344046 rs11203257 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:617:136,144:47,31:853 +1 18344219 rs72653328 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:137,148:143,184:815 +1 18344353 rs11811646 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18344353_A_G:602:138,129:180,158:1040 +1 18344363 rs11811657 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18344353_A_G:605:134,133:174,168:1154 +1 18344379 rs6586488 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:593:0,262:98,339:541 +1 18344558 rs10887979 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:566:1,247:78,320:285 +1 18344694 rs11203258 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:108,135:135,156:770 +1 18345215 rs6701371 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:507:121,105:156,121:675 +1 18345465 rs142846903 TCCCAGCTA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:461:103,101:33,26:713 +1 18346092 rs17432613 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:139,105:176,138:1227 +1 18346165 rs4920408 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:89,140:136,191:1105 +1 18346541 rs7526376 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:437:95,89:139,117:916 +1 18346588 rs1934031 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:465:0,205:77,272:451 +1 18347420 rs4920409 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:274:0,68:74,74:343 +1 18348601 rs10887980 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:578:0,256:74,328:390 +1 18348655 rs10749612 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:555:0,244:82,320:433 +1 18348700 rs10887982 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:569:3,238:106,336:479 +1 18349019 rs12023252 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:145,132:166,158:816 +1 18349443 rs2355457 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:18349443_T_A:509:0,246:61,288:393 +1 18349444 rs2355458 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:18349443_T_A:511:0,248:61,289:393 +1 18349764 rs2355459 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:575:0,276:58,311:406 +1 18349821 rs4532860 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:650:0,309:68,350:465 +1 18350166 rs6586489 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:18350166_C_T:549:0,238:0,238:281 +1 18350182 rs7515562 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:18350166_C_T:570:0,232:0,232:424 +1 18350210 rs11348896 GA G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:431:1,205:1,205:99 +1 18350326 rs7515670 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,291:74,352:396 +1 18352387 rs11203260 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:696:175,148:194,176:894 +1 18353235 rs11203261 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:480:1,205:51,253:307 +1 18353743 rs7550969 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:122,131:150,148:564 +1 18354052 rs72653335 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:661:167,132:194,167:1148 +1 18354504 rs11579849 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:508:0,239:61,279:416 +1 18354931 rs6668725 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:542:0,222:109,320:532 +1 18355079 rs10887984 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:542:0,246:79,309:469 +1 18355150 rs12132348 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:502:112,104:144,145:758 +1 18355412 rs6669252 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:523:0,239:66,289:340 +1 18356092 rs1416401 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:454:0,198:72,266:359 +1 18359356 rs72653340 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:423:107,85:123,106:488 +1 18359803 rs7553324 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:531:0,236:86,304:488 +1 18359901 rs7553424 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:493:1,216:75,280:416 +1 18360070 rs7530554 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,219:72,282:410 +1 18360510 rs10788648 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:502:0,234:46,271:355 +1 18361935 rs4920411 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:18361935_G_T:567:0,249:93,325:473 +1 18361939 rs4920412 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:18361935_G_T:564:0,249:90,321:539 +1 18361952 rs4920293 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:571:124,131:155,160:1078 +1 18362059 rs4920413 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:130,143:155,173:935 +1 18363268 rs1890498 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:142,118:175,144:872 +1 18363520 rs6687107 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:149,123:189,164:1201 +1 18363857 rs1934034 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:694:0,291:0,282:516 +1 18364428 rs946375 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:635:0,283:76,336:457 +1 18364746 rs140804578 C CCATTCATT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:356:88,88:0,0:259 +1 18365279 rs946374 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:651:0,304:67,358:398 +1 18366030 rs141689223 C CAT 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0|1:18366030_C_CAT:478:131,123:0,0:339 +1 18366034 rs111604450 T A 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0|1:18366030_C_CAT:469:131,117:0,0:347 +1 18366330 rs58213522 CA C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:443:102,95:84,85:147 +1 18366673 rs6586491 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:539:0,242:62,302:380 +1 18367579 rs4920414 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:521:0,231:87,294:499 +1 18367630 rs61763500 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:502:106,111:141,140:942 +1 18368710 rs10749613 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:18368710_A_G:448:0,208:0,208:283 +1 18368719 rs10788649 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:18368710_A_G:443:0,207:0,207:263 +1 18369052 rs34059773 A AT 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:372:1,157:0,0:179 +1 18369123 rs6586492 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:486:0,205:62,265:380 +1 18369584 rs7532584 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:487:0,216:68,277:403 +1 18369645 rs7535081 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,244:63,293:398 +1 18369990 rs7535260 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:437:0,196:75,247:440 +1 18370015 rs7523606 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:444:0,203:69,250:440 +1 18370771 rs12032253 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:667:146,140:191,188:1212 +1 18372532 rs11203269 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:651:0,296:80,361:457 +1 18372742 rs11203270 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,244:97,339:471 +1 18373009 rs12034254 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:589:0,264:86,332:487 +1 18373517 rs12729169 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:521:0,232:94,294:545 +1 18373739 rs1551478 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:575:1,259:82,321:383 +1 18374725 rs4920415 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:578:0,265:90,321:551 +1 18374838 rs4920416 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:612:0,272:76,340:423 +1 18374962 rs1551476 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:610:1,265:102,360:494 +1 18377480 rs10887987 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:620:140,133:181,166:919 +1 18377790 rs1031567 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:550:113,120:150,166:1354 +1 18377934 rs1031568 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:128,141:154,178:1208 +1 18383312 rs28623208 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:680:142,159:175,208:1083 +1 18383669 rs28706697 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:722:151,158:199,208:1421 +1 18386303 rs4920420 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:148,119:163,140:1012 +1 18386891 rs9728680 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:506:0,231:56,280:376 +1 18387270 rs9662572 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:530:122,119:151,134:657 +1 18387310 rs9659407 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:120,115:146,128:652 +1 18388922 rs60791100 C CAGAT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:567:122,133:28,42:1091 +1 18389622 rs72653363 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:460:97,98:145,122:1031 +1 18390091 rs9662539 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:444:101,82:141,115:861 +1 18390237 rs9659617 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:504:113,111:131,138:475 +1 18391974 rs9286088 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:658:147,149:178,182:965 +1 18392229 rs9727637 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:645:128,145:188,184:1150 +1 18393180 rs10158715 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:125,137:163,171:1084 +1 18393491 rs12067991 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:492:105,87:156,144:1151 +1 18393924 rs9286085 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:117,119:153,158:1271 +1 18395025 rs9662741 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:128,124:152,152:1227 +1 18395372 rs9662768 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:470:100,103:126,138:946 +1 18395713 rs17433514 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:122,142:165,162:789 +1 18395882 rs143269576 AGGCTGGGTGTGGT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:150,125:57,27:857 +1 18396011 rs72653377 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:18396011_C_T:528:118,103:161,147:1113 +1 18396025 rs61763557 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:18396011_C_T:537:115,101:162,159:1238 +1 18396057 rs4920423 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:585:122,123:171,165:965 +1 18396783 rs61763558 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:518:99,117:143,159:1276 +1 18397390 rs17486552 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:626:149,133:170,172:1116 +1 18398438 rs11577172 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:435:85,74:33,43:713 +1 18399378 rs9662797 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:538:118,117:154,146:696 +1 18399535 rs72653385 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:138,133:178,161:954 +1 18400980 rs10907300 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:609:138,147:153,159:799 +1 18402374 rs56096451 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:726:185,151:204,173:1046 +1 18403147 rs61765660 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:501:88,88:69,38:1200 +1 18404792 rs9662970 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,249:63,299:360 +1 18405073 rs17486629 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:116,123:147,165:986 +1 18405426 rs4920424 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:447:0,185:73,258:338 +1 18405541 rs11260973 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:514:115,87:153,131:1106 +1 18405827 rs61765661 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:464:114,86:28,29:535 +1 18408139 rs4920425 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:537:123,114:156,143:1050 +1 18408175 rs4920426 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:531:0,246:69,297:431 +1 18408767 rs9660584 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:621:150,132:173,172:1279 +1 18410740 rs11804724 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:709:166,156:198,191:1408 +1 18412381 rs897496 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:123,142:158,171:1093 +1 18412999 rs10796449 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:535:112,137:131,155:709 +1 18414220 rs5772791 G GA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:559:135,114:44,33:866 +1 18417436 rs11261000 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:135,150:155,188:1061 +1 18420830 rs72653391 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:115,130:131,161:812 +1 18422020 rs56190638 C CCTCTCT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:298:0,144:0,0:259 +1 18422105 rs4920294 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,218:97,304:343 +1 18422972 rs11261013 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:515:112,126:127,155:767 +1 18423804 rs148296050 T TTCCC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:343:0,154:37,37:316 +1 18423969 rs11261016 T G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:18423969_T_G:296:73,68:0,0:259 +1 18423986 rs77256651 TTC T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:18423969_T_G:355:107,110:0,0:760 +1 18424075 rs112089449 CCTTT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:293:70,59:0,0:160 +1 18424791 rs12132615 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:480:118,93:146,116:1064 +1 18425076 rs4920427 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:124,127:151,145:738 +1 18425601 rs4920428 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:124,114:158,146:709 +1 18425983 rs11261023 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:495:114,114:131,136:835 +1 18426109 rs9730657 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,247:86,321:461 +1 18427031 rs12740505 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:739:156,152:225,203:1233 +1 18427615 rs9659352 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:561:0,240:96,318:473 +1 18427833 rs67159219 TTTCCTTCCTTCCTTTCTTCCTTTC T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:269:76,69:0,0:259 +1 18428017 rs10907316 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:490:0,201:108,285:562 +1 18428766 rs1342572 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:539:0,237:90,308:493 +1 18429526 rs936118 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:127,135:164,178:961 +1 18429575 rs930851 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:132,134:151,169:856 +1 18430489 rs71707255 CTGTG C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:405:0,177:48,48:343 +1 18431140 rs9659829 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,242:51,287:327 +1 18431747 rs72653402 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:120,114:160,145:1036 +1 18431897 rs143602393 C CTCAT 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:467:126,116:0,0:358 +1 18432024 rs930850 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,254:94,330:507 +1 18433477 rs67795287 GGTGT G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:241:53,60:0,0:259 +1 18433805 rs12132164 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:416:0,183:62,238:366 +1 18434518 rs9660391 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:285:9,142:0,0:282 +1 18434981 rs11806559 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:497:116,102:144,134:912 +1 18435095 rs10907322 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:441:0,199:84,243:485 +1 18435748 rs3738090 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:383:84,84:20,17:486 +1 18436657 rs3820277 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:514:0,235:51,286:324 +1 18436730 rs72655105 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:121,121:166,159:779 +1 18437654 rs12136260 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:452:110,83:30,24:662 +1 18437818 rs1869807 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:99,124:139,166:1140 +1 18438239 rs4920295 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:647:134,140:185,182:1377 +1 18438329 rs4920430 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:673:147,151:44,54:1308 +1 18438351 rs1342569 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:649:150,136:40,56:1146 +1 18438930 rs10157701 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:123,143:164,193:1281 +1 18439777 rs115590464 C A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:536:166,69:54,21:650 +1 18439991 rs56169608 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:506:120,99:153,131:1083 +1 18440200 rs4920296 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:473:0,197:83,269:444 +1 18440609 rs72655115 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:126,131:174,162:1139 +1 18440849 rs34692030 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:127,136:156,152:742 +1 18440935 rs35259924 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:640:141,141:178,181:1148 +1 18441860 rs12144931 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:531:111,130:134,151:682 +1 18442438 rs2009123 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:521:0,224:62,286:373 +1 18442737 rs35800064 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:122,125:151,144:942 +1 18443992 rs1342570 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:669:141,134:137,131:1675 +1 18444009 rs1342571 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:665:151,134:139,129:1451 +1 18444514 rs10443386 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:103,115:140,165:903 +1 18444803 rs4920432 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:485:103,112:134,139:865 +1 18445430 rs9660827 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:461:0,186:61,241:289 +1 18446545 rs4920297 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:644:152,137:181,175:1320 +1 18447551 rs1858589 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:128,137:147,171:1108 +1 18448158 rs988001 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:518:0,230:70,291:400 +1 18448811 rs4920433 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:519:125,102:148,123:566 +1 18449307 rs1869806 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:602:0,258:78,336:385 +1 18449908 rs12126289 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:116,132:143,156:734 +1 18450321 rs12735521 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:507:109,106:149,142:1129 +1 18450595 rs12072266 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:508:119,110:30,32:784 +1 18451092 rs11261056 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:449:0,197:53,250:332 +1 18451128 rs10907329 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:463:1,210:45,254:317 +1 18451663 rs987294 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:470:0,219:49,253:375 +1 18451900 rs987293 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:499:0,225:80,290:480 +1 18452705 rs66701503 AGCTC A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:134,115:29,20:578 +1 18453085 rs9661616 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:426:89,103:18,21:534 +1 18454136 rs12124959 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:523:104,123:136,155:778 +1 18454964 rs1858587 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:460:92,99:131,136:1070 +1 18455282 rs72549934 CTG C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:299:69,81:0,0:255 +1 18455424 rs11261067 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:477:94,121:119,137:685 +1 18455617 rs4920434 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:481:0,226:64,260:471 +1 18455808 rs11261068 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:473:99,110:124,139:878 +1 18456475 rs1858586 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,242:108,332:546 +1 18458662 rs113327519 AATGGATGG A 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:339:1,183:0,0:272 +1 18459402 rs11261082 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:18459402_T_C:489:0,218:43,43:378 +1 18459405 rs12119524 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18459402_T_C:487:141,71:29,18:433 +1 18459706 rs9726260 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:442:108,96:126,111:448 +1 18460526 rs9725656 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:530:131,130:135,134:499 +1 18461490 rs12036744 C T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:571:109,147:138,176:637 +1 18461862 rs11261090 G A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:481:106,113:0,0:244 +1 18462527 rs138198557 T A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:624:161,147:161,147:198 +1 18462987 rs78243466 C G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:653:156,169:156,169:198 +1 18463162 rs12569335 T C 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:590:154,158:132,138:301 +1 18463577 rs12026310 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:137,112:167,138:1053 +1 18465730 rs72655118 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:147,142:174,169:931 +1 18466921 rs4920436 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,252:98,338:511 +1 18467153 rs2005010 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:505:114,120:129,142:1065 +1 18467265 rs2005334 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:543:110,126:144,162:1104 +1 18468093 rs876032 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:111,116:152,153:897 +1 18468186 rs876033 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:136,136:167,165:1092 +1 18468789 rs1455913 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:137,146:161,160:782 +1 18469772 rs897499 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:519:159,145:106,104:1047 +1 18470864 rs747896 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:471:103,97:142,123:747 +1 18471278 rs10907331 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:476:109,116:127,119:597 +1 18471557 rs10907332 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:135,114:174,162:1276 +1 18471704 rs11450077 A AG 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:18471704_A_AG:323:161,162:110,108:1316 +1 18471705 rs59037367 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:18471704_A_AG:324:162,162:111,108:1316 +1 18471737 rs11261094 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:465:106,99:136,124:792 +1 18472050 rs9729186 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:146,117:177,149:909 +1 18473125 rs72655120 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:135,106:161,150:945 +1 18474561 rs11261095 C A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:504:1,203:64,64:400 +1 18474776 rs11261096 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18474776_C_T:502:94,107:125,142:848 +1 18474781 rs9727479 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:18474776_C_T:506:0,200:86,286:593 +1 18475334 rs2027531 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:670:136,150:201,183:1000 +1 18475441 rs4311853 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:638:140,136:171,193:939 +1 18475485 rs9660184 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:587:136,134:165,154:879 +1 18475498 rs4920440 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:548:120,121:155,152:790 +1 18475523 rs2027530 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:532:0,242:58,290:320 +1 18475788 rs72655121 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:117,120:145,164:792 +1 18476084 rs11261097 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:554:117,134:139,154:569 +1 18476155 rs11336219 TG T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:493:98,95:77,30:671 +1 18476187 rs9727014 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:546:115,116:45,49:1205 +1 18476231 rs9727948 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:508:108,118:126,149:868 +1 18476339 rs9728660 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:139,127:166,168:1144 +1 18476411 rs9728666 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:569:117,122:156,179:987 +1 18476601 rs9727352 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:476:84,117:131,145:621 +1 18476868 rs12404317 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:18476868_T_C:501:102,105:37,24:866 +1 18476876 rs12404895 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:18476868_T_C:525:103,104:55,30:916 +1 18476902 rs34970358 CG C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:361:80,60:39,29:651 +1 18477036 rs12404328 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:478:100,109:126,137:713 +1 18477121 rs12404926 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18477121_A_T:549:114,118:156,156:1020 +1 18477141 rs12408479 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18477121_A_T:511:112,110:152,140:860 +1 18477144 rs12404341 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18477121_A_T:497:114,112:144,134:780 +1 18477160 rs10907333 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:539:124,119:144,152:822 +1 18477394 rs10907334 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:140,112:168,137:658 +1 18477450 rs10796459 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,246:89,330:415 +1 18478002 rs56255918 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:530:100,133:136,164:869 +1 18478269 rs12126587 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:537:131,107:165,135:1055 +1 18478540 rs4920443 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:143,134:174,159:1193 +1 18479417 rs12564645 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:144,119:184,165:1342 +1 18479711 rs1031566 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:567:0,247:94,321:512 +1 18480347 rs9662824 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:504:110,119:133,142:838 +1 18481003 rs10907335 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:461:99,113:111,134:843 +1 18483129 rs16861648 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:112,125:144,154:977 +1 18483697 rs11260938 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:125,124:147,136:370 +1 18483918 rs9659675 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:122,117:169,154:955 +1 18484110 rs9659686 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:131,131:159,158:1107 +1 18487716 rs9727566 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:489:121,106:132,121:769 +1 18487992 rs9662108 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:484:0,218:68,268:401 +1 18488048 rs61495805 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:512:0,227:75,288:347 +1 18488531 rs56400992 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:607:0,267:90,353:321 +1 18489582 rs72655127 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:527:114,109:152,152:1287 +1 18489594 rs72655128 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,226:95,304:544 +1 18490587 rs4920303 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:18490587_G_A:696:0,302:112,398:1065 +1 18490595 rs4920304 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18490587_G_A:678:157,131:209,177:1387 +1 18491472 rs10796440 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:464:100,108:125,125:507 +1 18491529 rs10796441 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:621:146,135:177,157:726 +1 18493076 rs11802233 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:124,130:154,166:1138 +1 18495745 rs4920447 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:128,138:170,155:644 +1 18497837 rs9662256 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:488:0,215:73,277:417 +1 18498986 rs72655132 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:143,138:160,161:680 +1 18499737 rs11260945 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,245:62,307:364 +1 18499955 rs11260947 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,264:61,323:367 +1 18500091 rs2175993 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,291:52,309:425 +1 18501166 rs12038815 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:480:0,212:76,276:427 +1 18502181 rs12039774 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:126,126:158,159:1065 +1 18503402 rs749917 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:141,129:171,156:1059 +1 18505051 rs34019357 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:670:165,152:185,173:1059 +1 18505230 rs56206274 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:442:0,195:62,251:394 +1 18506019 rs72655135 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:697:151,145:207,196:1213 +1 18507369 rs11260951 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:578:0,249:115,331:596 +1 18508512 rs4920449 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:550:0,245:66,311:379 +1 18508916 rs1891462 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:556:0,243:65,308:365 +1 18510033 rs9728569 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:631:0,295:77,339:521 +1 18512328 rs10907289 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:629:0,282:77,352:343 +1 18512983 rs9727616 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:136,125:157,153:935 +1 18513714 rs72126320 CAGAG C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:367:20,198:0,176:211 +1 18513830 rs4920450 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,275:72,340:406 +1 18514322 rs2883731 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:628:0,298:60,339:428 +1 18514902 rs4920451 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:557:1,246:78,316:425 +1 18516479 rs9660324 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:500:0,229:47,273:229 +1 18516538 rs9662032 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:510:0,224:60,284:335 +1 18516703 rs12567796 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:507:0,226:64,286:355 +1 18516999 rs67839615 TCTGGAG T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:496:0,236:46,46:384 +1 18517413 rs12731161 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:412:0,187:50,231:326 +1 18518972 rs962264 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:520:1,246:56,284:386 +1 18519369 rs1004218 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,241:106,330:536 +1 18519392 rs1004219 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:518:0,222:93,301:481 +1 18520221 rs35352101 AC A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:594:0,275:54,54:432 +1 18521689 rs767654 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:658:1,288:120,377:603 +1 18521807 rs767655 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:601:0,277:79,326:499 +1 18522189 rs72655138 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:126,150:157,172:951 +1 18523140 rs4920452 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:517:0,237:59,296:364 +1 18523331 rs4920453 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:547:0,251:70,307:426 +1 18525024 rs908203 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:594:0,260:99,352:485 +1 18526091 rs4920455 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:446:93,101:121,136:711 +1 18526148 rs4920456 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:473:106,99:139,126:694 +1 18526394 rs113326388 CT C 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:436:86,84:51,40:766 +1 18526917 rs4920457 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:439:97,103:116,122:458 +1 18527000 rs4920458 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:547:0,244:78,309:355 +1 18527213 rs4920459 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:127,124:152,154:1060 +1 18527267 rs4920460 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,260:62,307:404 +1 18527951 rs17488627 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:129,124:156,157:932 +1 18528026 rs9725311 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,258:79,327:402 +1 18528144 rs9725340 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:481:0,208:84,282:444 +1 18528567 rs9729921 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:537:130,115:157,136:800 +1 18528848 rs1033190 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:116,149:151,171:984 +1 18529111 rs9659886 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:552:110,336:0,219:517 +1 18529747 rs17435762 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:152,138:166,157:678 +1 18529884 rs10796443 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:143,135:178,155:576 +1 18531634 rs140828822 GGAGAGAGAGA G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:495:107,122:0,0:564 +1 18531733 rs763960 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:653:0,283:100,363:509 +1 18532722 rs2355653 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,249:82,322:408 +1 18533281 rs4920461 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:539:0,249:69,296:445 +1 18534363 rs1356000 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:158,152:188,182:1063 +1 18534609 rs1531120 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,282:62,329:403 +1 18534891 . T ATATATATATA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/0:.:183:0,0,0:0,0,0:149 +1 18534891 . T ATATATATATATATATA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:183:0,0,0:0,0,0:149 +1 18535255 rs4920462 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:612:130,148:158,171:1199 +1 18535269 rs4920307 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:597:0,280:64,320:523 +1 18536278 rs10752433 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:504:121,91:154,126:891 +1 18536355 rs10907295 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:457:102,95:131,121:933 +1 18536400 rs55838870 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:452:92,106:112,144:879 +1 18536741 rs72655145 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:461:104,103:123,123:729 +1 18536944 rs4920463 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:133,136:170,169:1168 +1 18537154 rs61762141 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:436:108,85:128,114:777 +1 18538091 rs2124412 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:682:0,326:67,362:454 +1 18538464 rs61762142 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:104,130:135,157:673 +1 18539248 rs61762144 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:543:125,120:153,140:755 +1 18539344 rs5772796 G GA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0|1:18539344_G_GA:431:105,103:0,0:259 +1 18539349 rs2883732 T G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:18539344_G_GA:515:110,108:0,0:689 +1 18539773 rs6684062 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:130,140:154,170:775 +1 18540242 rs61762145 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:518:114,112:157,135:762 +1 18540596 rs60927085 TAATA T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:147,145:32,32:844 +1 18540973 rs7527636 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,270:75,333:388 +1 18541200 rs12563111 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:120,132:172,163:963 +1 18541502 rs55657414 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:520:110,118:143,144:625 +1 18541680 rs2883733 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:142,113:183,138:823 +1 18541807 rs4920464 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:647:0,301:88,348:555 +1 18542099 rs55715295 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:432:94,100:115,125:907 +1 18542324 rs11260955 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:497:0,209:91,288:468 +1 18543071 rs6676376 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:533:1,240:75,293:450 +1 18543252 rs11260957 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:585:135,120:164,163:1009 +1 18543784 rs11260958 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:133,143:160,160:644 +1 18544840 rs4310409 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:481:89,114:117,159:1061 +1 18545932 rs11578597 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:497:122,118:130,133:842 +1 18546090 rs6681991 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:510:123,97:153,137:1149 +1 18547031 rs61762148 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:538:130,104:161,137:818 +1 18549843 rs2056073 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:586:1,248:96,339:433 +1 18550654 rs1417756 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:642:143,141:189,175:1110 +1 18550837 rs1913592 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:88,123:123,154:1190 +1 18551525 rs12129826 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:370:115,89:0,0:889 +1 18551905 rs1361557 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:389:84,80:34,31:877 +1 18551964 rs1417757 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:447:0,198:58,58:379 +1 18553033 rs2356003 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:18553033_T_A:576:1,263:66,322:495 +1 18553047 rs12033031 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18553033_T_A:607:138,127:175,165:1037 +1 18553305 rs61762149 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18553305_T_C:651:143,143:181,185:1202 +1 18553311 rs61762150 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18553305_T_C:635:139,144:172,186:1181 +1 18553592 rs72655150 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:129,119:166,160:1159 +1 18553632 rs17489003 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:595:136,127:167,171:1084 +1 18553678 rs925711 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:546:114,128:138,151:775 +1 18553726 rs61762151 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:501:120,88:146,127:1089 +1 18553789 rs61762152 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:492:116,95:139,134:976 +1 18553925 rs61762154 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:530:115,117:152,147:1172 +1 18554345 rs61762155 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:501:136,94:152,121:878 +1 18554356 rs3738087 C T 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:537:144,94:171,130:1040 +1 18554886 rs12032745 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:655:133,151:174,203:1000 +1 18556549 rs12034600 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:111,135:139,172:1062 +1 18556739 rs12031938 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:528:112,118:138,157:697 +1 18556959 rs17436172 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:133,112:150,139:852 +1 18557204 rs10907297 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:505:113,99:157,138:1153 +1 18557745 rs12037086 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:126,108:165,143:1187 +1 18558416 . C CGT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:297:2,68,68:0,0,0:239 +1 18558416 . C CGTGT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:297:2,68,68:0,0,0:239 +1 18558575 rs17436219 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:600:147,119:180,159:1319 +1 18559122 rs6664613 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:724:165,169:190,197:1142 +1 18559350 rs12036889 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:149,148:161,175:947 +1 18560459 rs16861724 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:686:142,163:186,203:1468 +1 18560488 rs1399437 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:676:0,297:112,386:369 +1 18561321 rs12038795 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:539:120,107:154,157:1234 +1 18561377 rs12041024 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:129,121:164,153:1047 +1 18561516 rs12040189 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:637:123,143:173,192:1462 +1 18561590 rs12041734 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:109,138:163,192:1399 +1 18562117 rs11584495 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:122,102:165,145:1151 +1 18562259 rs12041943 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:472:111,88:139,139:1177 +1 18562608 rs60118521 TTGGC T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:537:98,132:47,41:1277 +1 18562985 rs6663092 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:549:0,264:58,292:434 +1 18563039 rs6660120 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:565:0,261:54,306:252 +1 18563224 rs71575878 G GGA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:463:0,200:67,67:345 +1 18563258 rs12037812 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:527:98,117:65,41:1065 +1 18563449 rs11260963 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:121,128:122,151:570 +1 18563469 rs16861728 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:520:118,119:147,140:955 +1 18563683 rs10907298 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:637:0,279:96,348:520 +1 18563889 rs4920310 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:550:0,237:93,319:422 +1 18563991 rs4920311 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:547:1,225:103,324:492 +1 18564509 rs5772797 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:579:0,252:70,70:410 +1 18565119 rs35114666 GA G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,245:53,53:390 +1 18565167 rs10907299 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,262:85,85:509 +1 18565256 rs11260964 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:556:0,248:72,311:415 +1 18565568 rs34947214 GCTA G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:501:0,236:46,46:411 +1 18565749 rs1341307 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:507:0,219:87,301:344 +1 18565897 rs4920466 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:538:0,249:67,299:422 +1 18566532 rs2203417 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:619:0,282:62,337:262 +1 18566851 rs2883821 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:718:1,303:122,416:518 +1 18566990 rs997007 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:673:156,142:185,186:1122 +1 18568624 rs55957114 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:562:139,105:175,146:1197 +1 18569189 rs61760775 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:145,143:179,151:854 +1 18569510 rs12566407 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:124,102:157,143:977 +1 18570206 rs872730 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:546:0,255:69,302:433 +1 18570690 rs908201 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:602:0,267:73,331:418 +1 18571361 rs1810283 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:693:0,319:70,387:336 +1 18571600 rs1739109 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:736:1,348:64,401:332 +1 18571771 rs223173 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:750:0,354:62,413:370 +1 18572901 rs109490 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:616:0,284:75,333:493 +1 18573022 rs109489 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:666:0,296:105,381:538 +1 18576713 rs223198 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:360:90,71:118,84:679 +1 18577110 rs223199 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:546:112,116:161,162:1291 +1 18578075 rs1003741 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:673:144,152:188,184:1189 +1 18579038 rs223177 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:567:128,129:153,154:987 +1 18579331 rs223178 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:572:1,250:98,322:531 +1 18579724 rs56225639 C CCTT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:131,148:35,39:941 +1 18580851 rs146760306 AAACCCT A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:351:98,83:0,0:256 +1 18581074 rs223179 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:539:128,111:150,148:1066 +1 18581352 rs72010934 TCATC T 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:378:97,99:0,0:358 +1 18590211 rs72655163 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:148,138:186,151:557 +1 18593342 rs1341310 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:125,159:147,183:906 +1 18598838 rs170341 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:485:0,217:54,264:364 +1 18599956 . CTCTT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:261:0,66,80:0,0,0:238 +1 18599956 . CTCTTTCTTTCTTTCTTTCTT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:261:0,66,80:0,0,0:238 +1 18605788 rs447900 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:18605788_A_C:595:0,285:69,325:473 +1 18605791 rs450956 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:18605788_A_C:591:0,282:68,321:462 +1 18605816 rs192002 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:18605788_A_C:624:0,282:101,351:571 +1 18605838 rs223190 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:18605788_A_C:609:0,272:88,337:477 +1 18609129 . T TACAC 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:217:54,47:0,0:160 +1 18609246 rs4920470 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:420:93,94:114,116:673 +1 18610172 rs12732186 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:437:84,90:128,129:1092 +1 18610402 rs223191 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:676:146,131:142,129:1544 +1 18611016 rs223192 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:733:162,161:211,202:1253 +1 18611486 rs223193 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:649:144,136:185,175:1169 +1 18612669 rs6670195 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:512:119,117:129,147:769 +1 18612759 rs10907301 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:125,131:158,150:863 +1 18613008 rs223194 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:629:150,134:175,160:1060 +1 18613131 rs223195 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:139,126:155,146:544 +1 18614102 rs10752434 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:530:133,105:162,124:645 +1 18614322 rs10796445 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:130,98:169,132:1057 +1 18614465 rs1739111 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:651:134,138:177,196:1252 +1 18615392 rs6603893 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:126,98:156,133:926 +1 18618092 rs12126228 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:513:92,119:140,155:906 +1 18621986 rs223201 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:137,150:164,190:1037 +1 18622405 rs223159 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,240:91,323:463 +1 18623324 rs223160 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:102,122:148,157:1083 +1 18624309 rs147313609 TA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:704:164,135:47,51:947 +1 18625020 rs223161 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:510:104,122:138,146:787 +1 18625719 rs223162 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:641:143,142:178,178:982 +1 18626917 rs1832787 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:649:132,149:158,212:983 +1 18627814 rs149456293 TTTTG T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:415:101,107:0,0:246 +1 18628488 rs223155 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:473:0,211:77,274:639 +1 18628495 rs10907303 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:485:104,104:143,128:792 +1 18628554 rs223156 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:436:0,198:48,241:300 +1 18628620 rs223157 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:421:0,191:52,52:408 +1 18628659 rs439857 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:18628659_A_G:433:0,181:89,89:655 +1 18628660 rs412548 A T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:18628659_A_G:431:0,179:89,89:655 +1 18628674 rs5772801 CA C 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:408:85,85:39,36:882 +1 18630106 rs1533345 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:676:139,153:131,144:1160 +1 18630150 rs1555219 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:755:160,155:151,146:1675 +1 18630765 rs9651255 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:123,121:174,154:899 +1 18631142 rs10907304 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18631142_A_G:468:94,100:133,134:893 +1 18631175 rs12134352 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18631142_A_G:450:130,138:0,0:1034 +1 18631224 rs112519577 T TACAC 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:314:86,68:0,0:344 +1 18631558 rs12135180 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:515:114,134:115,155:646 +1 18631671 rs4920471 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:489:142,135:0,0:788 +1 18631675 rs113504172 G GGGAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:340:82,85:0,0:246 +1 18632007 rs11260974 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:342:71,70:0,0:244 +1 18632065 rs368200242 GATGGATT G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18632065_GATGGATT_G:351:88,59:0,0:259 +1 18632098 rs11260976 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18632065_GATGGATT_G:409:108,65:0,0:259 +1 18632368 rs11260977 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:161,116:180,151:1175 +1 18632801 rs11260978 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:121,111:167,156:1386 +1 18633357 rs12127986 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:122,118:170,156:1011 +1 18633683 rs761584 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:175,149:131,102:999 +1 18633936 rs55905837 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18633936_C_G:604:142,134:165,171:1271 +1 18633940 rs761585 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18633936_C_G:607:139,136:160,179:1284 +1 18634648 rs4920472 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:551:125,109:169,143:758 +1 18636049 rs68096873 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:98,118:138,159:1000 +1 18636605 rs56018129 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:595:148,140:164,152:651 +1 18637260 rs708083 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:496:0,224:58,273:351 +1 18638358 rs223206 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:472:98,89:153,133:1011 +1 18639254 rs34339029 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:130,141:162,176:1107 +1 18639768 rs11260979 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:514:0,232:60,287:387 +1 18640071 rs66814535 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:139,130:171,166:1157 +1 18640174 rs2355876 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,264:99,354:494 +1 18640441 rs223208 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:658:0,294:89,371:449 +1 18642041 . T TGATGGATG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:303:0,71,78:0,0,0:245 +1 18642041 . T TGATGGATGGATGGATG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:303:0,71,78:0,0,0:245 +1 18642315 rs58352887 G GGATGGCTA 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:385:0,198:0,0:258 +1 18642514 rs72655188 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18642514_C_T:545:112,112:170,151:1175 +1 18642515 rs72655190 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18642514_C_T:545:112,112:170,151:1175 +1 18642916 rs17277484 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:119,124:146,158:914 +1 18643007 rs11260981 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:137,140:163,151:901 +1 18643247 rs4920474 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:151,152:167,187:1175 +1 18643335 rs4920475 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:625:0,282:96,352:537 +1 18643349 rs4920476 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:636:0,286:98,356:550 +1 18643411 rs17277497 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:645:160,115:199,169:1274 +1 18643577 rs6663855 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:129,130:165,179:1166 +1 18643594 rs6681344 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:127,141:158,182:1097 +1 18643632 rs4920477 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:652:0,292:90,374:464 +1 18643742 rs11313726 GA G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:137,132:42,39:845 +1 18644727 rs11260982 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,231:86,312:373 +1 18644956 rs72655191 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:466:116,136:0,0:516 +1 18644959 rs145622160 C CGT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:352:93,79:0,0:246 +1 18645011 rs10796446 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:516:97,105:50,63:1105 +1 18645472 rs223211 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:626:0,289:71,341:449 +1 18646231 rs1040623 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:619:0,294:52,330:380 +1 18646832 rs34977403 ACAGT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:127,116:40,28:893 +1 18647053 rs2078344 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:133,129:158,156:719 +1 18647242 rs223214 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:685:164,150:192,182:1198 +1 18647461 rs72655193 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:146,121:177,151:984 +1 18648299 rs223218 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:504:118,107:158,129:806 +1 18648868 rs223220 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:475:133,87:124,84:469 +1 18648936 rs149175857 G GAGAGGC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:423:104,86:19,24:535 +1 18650705 rs223225 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:640:0,269:116,380:505 +1 18650794 rs223226 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:681:0,308:91,380:489 +1 18651820 rs223166 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:603:0,277:69,330:398 +1 18653919 rs484128 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:136,135:161,173:1011 +1 18654055 rs223169 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,258:100,338:512 +1 18654307 rs223170 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:128,144:171,171:691 +1 18654584 rs6683529 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:525:107,138:132,147:530 +1 18655002 rs223172 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:601:0,278:85,330:518 +1 18655339 rs4920478 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:140,118:165,152:1123 +1 18655390 rs4920312 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:146,132:170,142:762 +1 18656223 rs4920479 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:124,116:168,155:1028 +1 18656738 rs573262 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:110,129:128,171:867 +1 18657450 rs851444 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:574:136,130:161,146:1123 +1 18659185 rs61760793 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:565:109,122:157,167:952 +1 18659299 rs55921255 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:550:119,110:154,168:1135 +1 18659641 rs552749 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:485:2,218:54,266:328 +1 18659688 rs553553 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,252:83,300:528 +1 18659978 rs55834522 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:129,148:163,178:931 +1 18660295 rs558986 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:583:2,258:78,323:412 +1 18661583 rs536540 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:120,123:149,149:778 +1 18663350 rs10796448 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:651:0,289:93,371:477 +1 18664136 rs11296454 AC A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:516:108,116:38,34:924 +1 18664626 rs517004 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:550:0,232:112,329:522 +1 18665076 rs4920480 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:134,112:165,148:1055 +1 18665888 rs549933 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:576:0,252:93,330:490 +1 18666219 rs6603894 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:126,148:170,182:794 +1 18667156 rs581426 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:412:0,191:49,223:385 +1 18667321 rs6668265 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:449:88,112:107,137:1021 +1 18668178 rs12027435 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:496:99,121:120,147:1012 +1 18668501 rs11260984 A C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:170,177:0,0:1055 +1 18668870 rs851447 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18668870_G_A:657:121,172:163,199:884 +1 18668879 rs851448 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18668870_G_A:675:124,174:168,213:1188 +1 18668885 rs851449 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18668870_G_A:695:124,177:173,224:1238 +1 18669450 rs648097 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:674:150,171:171,188:512 +1 18669899 rs72657404 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:718:168,155:206,195:1243 +1 18671500 rs12026295 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:512:99,117:133,157:947 +1 18671964 rs708084 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:118,131:139,163:565 +1 18672157 rs657661 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:626:0,282:84,355:695 +1 18672168 rs657983 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:665:146,146:184,182:1096 +1 18672774 rs542634 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:545:115,108:25,38:645 +1 18673205 rs546969 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:466:0,216:43,252:328 +1 18674624 rs591910 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:730:156,163:202,218:1333 +1 18675868 rs7538866 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:431:97,93:122,119:854 +1 18676035 rs608546 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:485:115,87:154,127:1202 +1 18676276 rs7534870 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18676276_C_T:542:121,117:144,157:879 +1 18676285 rs528342 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|0:18676276_C_T:539:123,117:151,144:983 +1 18676399 . C AA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:188:0,0:0,0:160 +1 18676799 rs638770 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:121,104:154,148:1005 +1 18676961 rs555115 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:132,141:161,170:1099 +1 18677161 rs556886 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:509:111,93:0,0:578 +1 18677839 rs2281400 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:463:108,90:138,127:759 +1 18678758 rs708087 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:699:1,317:104,390:551 +1 18679366 rs4920481 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:433:89,74:121,114:783 +1 18680330 rs539132 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:653:0,282:109,372:518 +1 18680729 rs563863 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:433:0,196:63,243:386 +1 18681213 rs1763902 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:516:0,240:55,283:377 +1 18681546 rs4920482 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:18681486_A_G:615:149,119:194,151:867 +1 18681920 rs519312 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:668:155,156:146,151:614 +1 18681932 rs4920483 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:692:171,156:162,148:456 +1 18682106 rs5772806 TA T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:461:116,132:93,109:488 +1 18682189 rs521994 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:149,125:182,156:1103 +1 18682416 rs191118637 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:449:79,77:106,110:605 +1 18682517 rs643432 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:521:1,216:95,307:452 +1 18682695 rs547633 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:128,144:167,190:1208 +1 18683049 rs614462 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,232:113,335:501 +1 18683541 rs576285 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:493:120,106:138,125:1075 +1 18683756 rs55743113 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:393:86,83:111,109:916 +1 18684185 rs1739103 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:499:0,212:90,90:469 +1 18684442 rs61684697 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:134,133:176,154:1143 +1 18684540 rs641511 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:492:139,107:0,0:346 +1 18684587 rs12027339 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:576:125,129:0,0:1065 +1 18685014 rs1401513 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:150,155:168,164:773 +1 18685434 rs525448 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:621:142,151:165,168:808 +1 18685713 rs851739 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,243:41,282:298 +1 18685733 rs851740 G C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18685733_G_C:523:101,128:20,26:667 +1 18685758 rs851741 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18685733_G_C:515:94,116:34,44:898 +1 18685956 . GGGAA G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/0:.:131:0,0,0:0,0,0:160 +1 18685990 . GAAGGAAGGAAGG A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:131:0,0,0:0,0,0:160 +1 18687609 rs11260988 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:593:125,134:168,165:844 +1 18687883 rs2003724 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:711:165,143:209,196:1349 +1 18687912 rs1763903 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:672:1,299:108,390:420 +1 18688947 rs871288 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:484:105,119:123,135:731 +1 18689252 rs4920485 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:120,123:173,173:1363 +1 18689505 rs4920486 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:525:103,112:163,149:1031 +1 18689873 rs4920316 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:453:96,93:121,134:626 +1 18690807 rs4920487 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:471:88,104:136,140:992 +1 18690998 rs4920488 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:485:100,116:124,141:1100 +1 18693245 rs7543948 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:145,116:170,137:901 +1 18694036 rs12123650 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:444:90,79:33,33:915 +1 18694376 rs12744749 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:518:110,113:152,135:577 +1 18694771 rs6682810 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:416:98,89:109,104:490 +1 18695053 rs35969748 C CTT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:459:102,64:0,0:1115 +1 18696215 rs882916 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:110,119:148,157:1119 +1 18697023 rs7514110 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:712:143,181:164,225:808 +1 18697149 rs12035573 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:777:231,207:182,159:1252 +1 18697680 rs10907305 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:779:191,156:234,192:1099 +1 18699243 rs61763863 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:489:122,91:0,0:764 +1 18699444 rs12038532 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:656:146,145:188,170:909 +1 18699951 rs10907306 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:129,127:141,146:676 +1 18700256 rs884129 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:681:157,153:180,187:926 +1 18702265 rs11260994 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:135,120:187,158:1395 +1 18702563 rs10157096 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:667:167,130:50,46:1161 +1 18702988 rs10796450 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:594:0,269:83,328:455 +1 18703208 rs10796451 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:625:138,148:162,174:858 +1 18704862 rs1043459 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:814:0,262:94,344:533 +1 18705500 rs945499 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:625:2,277:94,351:461 +1 18707467 rs4920489 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:547:0,247:78,306:465 +1 18709013 rs1889864 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:605:0,288:76,330:482 +1 18709067 rs4920490 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:624:0,262:114,365:515 +1 18709132 rs4920491 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:657:0,302:79,358:478 +1 18709741 rs7538502 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,249:72,309:428 +1 18710698 rs1414641 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:447:0,204:49,247:341 +1 18712328 rs6684536 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,258:87,322:491 +1 18713457 rs112693583 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:489:0,215:59,274:343 +1 18715558 rs945502 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:615:1,286:72,342:418 +1 18716582 rs11260997 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:538:0,243:68,303:401 +1 18716962 rs4920317 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,285:48,327:304 +1 18717704 rs55747621 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:519:0,229:75,295:433 +1 18718016 rs11380124 A AG 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,273:0,0:513 +1 18718076 rs72652230 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:642:141,142:132,132:1113 +1 18719281 rs113819953 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:134,123:170,148:711 +1 18719844 rs4920492 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:119,131:161,165:1097 +1 18720923 rs4920493 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:516:0,224:75,285:435 +1 18721878 rs2152552 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:145,124:192,139:732 +1 18721998 rs72652231 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:119,129:156,158:966 +1 18722386 rs72652233 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:730:190,234:132,176:1209 +1 18722491 rs1336129 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:576:2,250:84,326:443 +1 18722737 rs1336131 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:759:172,162:65,53:1476 +1 18722801 rs1533623 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:737:0,341:86,402:493 +1 18722846 rs1533622 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:739:183,162:211,187:1189 +1 18724261 rs56355415 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:110,120:151,154:1058 +1 18725023 rs4920494 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:124,134:166,176:1112 +1 18726802 rs72652235 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:129,100:166,145:1075 +1 18727384 rs4920319 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,248:64,294:403 +1 18728291 rs3928114 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:600:0,258:102,354:482 +1 18730023 rs72652236 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:119,124:146,158:1002 +1 18730124 rs72652237 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:130,116:166,160:974 +1 18730305 rs7523920 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:120,107:156,136:1017 +1 18730596 rs10907308 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:543:110,112:156,161:1287 +1 18731241 rs4920320 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:132,128:161,161:1178 +1 18731481 rs72652242 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:121,134:140,161:944 +1 18731662 rs7522460 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,259:100,337:519 +1 18731729 rs72652243 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:126,158:162,184:1171 +1 18732273 rs11261001 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:516:117,107:154,134:926 +1 18732765 rs7513256 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:503:1,207:64,64:373 +1 18732860 rs2355879 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,241:101,339:457 +1 18732980 rs867538 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:647:161,124:196,164:1443 +1 18733117 rs1878975 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:597:0,277:81,334:484 +1 18733611 rs6656115 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:488:102,98:149,134:864 +1 18733717 rs6695244 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:486:1,214:62,270:350 +1 18734181 rs6664638 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,244:71,306:430 +1 18734604 rs6664427 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:509:1,210:100,297:480 +1 18734931 rs1009039 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:567:0,253:54,303:357 +1 18735010 rs1009040 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:592:112,135:161,182:1103 +1 18735266 rs1568342 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:473:0,207:78,271:386 +1 18735570 rs11577196 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:137,124:171,146:619 +1 18736202 rs1547552 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:633:0,284:98,362:514 +1 18736474 rs2176655 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:705:0,313:104,397:484 +1 18736664 rs9660186 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:120,121:152,150:611 +1 18736991 rs7512838 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:135,141:174,188:949 +1 18737233 rs12119827 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:128,127:166,154:727 +1 18737669 rs12120679 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:678:143,151:179,206:1051 +1 18738169 rs3007721 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:652:1,302:75,354:432 +1 18738567 rs2946531 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:739:0,330:92,422:448 +1 18739526 rs2355880 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:512:109,109:152,146:993 +1 18739546 rs1568341 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:537:117,118:155,149:1000 +1 18739603 rs7530993 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:513:0,235:66,288:408 +1 18739670 rs7522180 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:510:114,120:131,145:950 +1 18740528 rs11577969 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18740528_G_C:442:111,89:129,107:595 +1 18740533 rs11577970 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18740528_G_C:432:108,90:126,104:507 +1 18741257 rs5772807 G GC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:411:86,86:37,29:635 +1 18741534 rs56139821 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:125,128:165,156:926 +1 18742198 rs6692079 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,274:81,346:449 +1 18742827 rs7531123 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:719:0,325:92,409:442 +1 18743016 rs7515049 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:620:0,276:66,342:367 +1 18743551 rs2946530 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:728:0,341:78,397:470 +1 18744658 rs1914898 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:623:1,284:65,340:370 +1 18745243 rs12755028 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:113,115:154,162:902 +1 18746371 rs28574760 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:650:125,147:170,205:1204 +1 18747095 rs11261002 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:658:159,146:183,165:878 +1 18749020 rs56324903 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:152,136:179,174:941 +1 18749601 rs6700748 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:131,126:164,160:1062 +1 18749949 rs10752435 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:575:0,241:101,332:443 +1 18750431 rs12128025 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:761:156,178:217,214:1106 +1 18750539 rs60198910 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:673:162,146:194,172:1022 +1 18750770 rs1360917 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:630:0,292:63,344:397 +1 18750982 rs12076563 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:700:158,144:220,176:1140 +1 18751012 rs11261003 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:696:159,136:219,180:1519 +1 18751090 rs11488494 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:678:158,151:194,174:867 +1 18751483 rs6603895 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:717:193,199:159,151:870 +1 18751504 rs6603896 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:701:153,151:201,201:1158 +1 18751864 rs869080 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:636:163,107:45,42:1178 +1 18752441 rs34733022 TA T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:655:0,291:86,86:534 +1 18753139 rs945500 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:841:0,397:69,460:366 +1 18753159 rs945501 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:859:207,194:243,223:1019 +1 18753647 rs6696364 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:764:0,365:0,355:279 +1 18754450 rs2883907 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:770:184,167:228,190:757 +1 18754492 rs2946529 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:839:1,390:74,457:381 +1 18755136 rs6692466 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:814:193,185:220,209:1107 +1 18755426 rs12742347 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:790:179,178:210,215:1195 +1 18756164 rs199891920 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:676:151,159:15,38:441 +1 18756525 rs1414643 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:728:177,151:199,191:983 +1 18756961 rs6699137 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:690:162,142:56,44:1106 +1 18757535 rs2356239 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:667:146,158:163,188:512 +1 18757626 rs6658359 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:129,121:168,158:898 +1 18758186 rs4920496 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:148,174:155,198:785 +1 18758343 rs1878976 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,285:59,319:391 +1 18758632 rs1878977 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:112,114:154,149:910 +1 18759219 rs10443385 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:154,134:188,166:1103 +1 18759377 rs2222257 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:135,135:160,172:1115 +1 18759574 rs1356662 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:543:128,123:152,138:902 +1 18759858 rs1818672 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:396:0,148:67,67:352 +1 18759952 rs10907310 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:408:0,131:77,208:392 +1 18760117 rs11261006 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:450:107,96:119,110:556 +1 18761124 rs1336122 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:756:173,155:159,140:1352 +1 18761198 rs1336121 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:695:1,313:92,387:482 +1 18761292 rs5010838 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:134,131:164,160:756 +1 18761411 rs10796454 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:738:159,169:206,210:801 +1 18761500 rs10796455 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:740:174,160:210,194:1079 +1 18761893 rs1850750 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:639:162,133:191,154:875 +1 18763415 rs945503 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:445:92,93:132,128:857 +1 18763839 rs28733401 G T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:533:104,97:0,0:870 +1 18763851 . G C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:500:0,104,106:0,0,0:973 +1 18763851 . GTTTGTTTGTTTT G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:500:0,104,106:0,0,0:973 +1 18764102 rs11261008 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:561:0,266:45,45:335 +1 18764143 rs11261009 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:550:111,125:47,31:692 +1 18764191 rs10907311 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:484:0,220:64,64:411 +1 18764275 rs12080164 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:604:133,149:152,162:978 +1 18764548 rs11261010 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:577:135,113:33,32:811 +1 18764718 rs2139271 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:125,130:166,165:803 +1 18765244 rs57954114 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:166,124:196,156:1070 +1 18765308 rs1336128 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:718:112,428:0,0:614 +1 18765314 rs56996198 TTGAA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:502:146,111:0,0:249 +1 18765636 rs34703798 A AGT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18765636_A_AGT:472:102,111:17,25:346 +1 18765656 rs2139272 A C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18765636_A_AGT:583:134,132:40,26:801 +1 18766063 rs6668305 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:492:0,220:60,274:360 +1 18766761 rs1568339 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:577:123,147:32,45:1000 +1 18766813 rs11261011 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:144,120:172,155:1300 +1 18766850 rs1568340 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:627:0,285:89,349:410 +1 18767081 rs12136062 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:662:0,301:92,373:492 +1 18767791 rs2946523 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:500:121,105:142,125:939 +1 18772971 rs2946532 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:142,115:165,144:1052 +1 18773804 . CTGTG C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:478:122,117:0,0:256 +1 18774151 rs34602532 T TACAC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:131,130:42,39:1003 +1 18774693 rs2946535 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:631:154,127:185,166:1051 +1 18774783 rs2946534 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:665:145,132:134,128:1362 +1 18775928 rs2992747 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:708:0,331:74,381:437 +1 18776939 rs2992746 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:146,128:164,152:853 +1 18781186 rs12143792 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:116,129:146,169:899 +1 18781486 rs4920497 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:522:111,109:154,149:1265 +1 18781501 rs4920498 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:542:111,110:168,155:1217 +1 18781908 rs12141837 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:704:145,165:191,200:1288 +1 18782160 rs1533620 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:671:158,147:192,173:652 +1 18783321 rs2992744 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:578:0,267:60,319:378 +1 18783410 rs146047183 CT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:444:110,113:88,105:167 +1 18783560 rs2992743 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:571:0,253:84,319:462 +1 18783600 rs2992742 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:524:1,216:89,301:453 +1 18783742 rs2992741 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:547:0,230:97,327:436 +1 18784481 rs3007724 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,281:74,320:506 +1 18785466 rs10907312 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:617:139,128:179,172:1215 +1 18786779 rs7535812 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:700:164,157:194,184:1190 +1 18787197 rs111267148 GAATGAAT G 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:550:147,146:0,0:358 +1 18787874 rs3007725 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:684:0,319:79,364:500 +1 18789512 rs6603900 G T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:18789512_G_T:473:106,133:0,0:249 +1 18789522 . T TATAATA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/0:.:168:0,0,0:0,0,0:144 +1 18789537 . A AATAATAATG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:168:0,0,0:0,0,0:144 +1 18790027 rs7552628 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:466:111,93:134,119:730 +1 18790425 rs139184405 GT G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:551:120,135:35,40:990 +1 18791440 rs12140712 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:451:99,94:128,132:1055 +1 18794898 rs72655635 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:125,133:152,153:774 +1 18795162 rs2992739 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:662:145,149:174,194:1405 +1 18795255 rs3007729 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:627:130,141:175,184:1434 +1 18795442 rs12143755 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:137,116:168,149:1134 +1 18796034 rs11261015 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:142,131:172,180:977 +1 18796301 rs57323626 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:106,117:145,147:975 +1 18797100 rs3007730 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:532:0,233:79,304:433 +1 18797277 rs2992738 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:509:0,244:48,276:374 +1 18797473 rs2992737 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,260:60,304:412 +1 18797703 rs2992736 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:614:143,142:168,158:1039 +1 18800247 rs6665151 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:129,145:157,172:1086 +1 18800387 rs2992735 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:514:111,117:138,143:915 +1 18800547 rs2992734 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:508:119,114:138,132:925 +1 18800911 rs3007733 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:499:106,96:146,124:1118 +1 18801004 . C CTCTCTG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:194:0,0:0,0:160 +1 18801008 . G C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:202:0,0:0,0:151 +1 18801089 rs71018084 T TGTGTGGGTGTGC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:411:88,96:22,30:600 +1 18801606 rs3049905 TAAA T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:154,138:119,113:624 +1 18801697 rs1360916 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:640:137,146:170,180:1006 +1 18801804 rs1360915 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:554:100,111:0,0:1500 +1 18801847 rs34136920 CT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:425:83,83:0,0:578 +1 18802135 rs72655639 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:148,120:191,174:1002 +1 18802387 rs1316327 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:406:74,88:25,32:756 +1 18802522 rs2356240 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:423:91,97:118,118:803 +1 18802825 rs2992732 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:489:108,114:127,141:788 +1 18803022 rs3007734 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:458:104,88:142,121:1136 +1 18804144 rs2992764 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:158,141:166,159:717 +1 18804386 rs2992763 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:117,138:148,162:978 +1 18804547 rs12117247 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:467:111,105:111,105:322 +1 18804609 rs2992762 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18804609_A_G:471:97,111:118,141:731 +1 18804620 rs12119630 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18804609_A_G:473:98,106:128,140:823 +1 18804674 rs2992761 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:418:87,103:13,19:413 +1 18804821 rs2992760 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:290:59,41:18,29:575 +1 18804922 rs71512941 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:435:98,102:110,123:366 +1 18805328 rs11261017 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:399:89,94:104,109:706 +1 18805535 rs11261018 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:18805535_C_T:484:100,118:28,41:958 +1 18805536 rs11261019 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:18805535_C_T:488:102,120:28,41:958 +1 18805564 rs11261020 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:18805564_T_C:500:108,121:34,25:642 +1 18805572 rs35056789 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:18805564_T_C:507:117,121:25,21:644 +1 18805678 rs12061898 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:486:113,107:137,127:759 +1 18805718 rs7521842 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:504:113,105:158,129:877 +1 18805844 rs1360919 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:131,138:168,161:710 +1 18805880 rs7517421 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:130,120:170,139:470 +1 18805988 rs1360918 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:140,132:162,150:846 +1 18806084 rs4920322 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:130,148:167,183:1304 +1 18806137 rs4920323 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:686:139,161:191,197:1263 +1 18806242 rs2992759 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:18806242_C_T:605:149,124:37,40:1109 +1 18806245 rs4920501 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1|0:18806242_C_T:592:123,146:38,29:956 +1 18806585 rs10796456 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:127,138:160,182:1065 +1 18806859 rs67957569 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:515:113,115:150,140:536 +1 18806933 rs11261021 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:492:113,104:146,133:629 +1 18807058 rs7528188 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:644:146,131:56,55:1395 +1 18807117 rs7528206 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:137,126:176,155:927 +1 18807137 rs2992757 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:595:138,130:182,150:709 +1 18807536 rs7512414 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:593:134,114:173,153:833 +1 18807620 rs34109355 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:518:139,89:30,20:556 +1 18807755 rs34976233 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:97,104:118,119:543 +1 18807781 rs35013594 C T 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:115,116:133,149:696 +1 18807897 rs2992755 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:707:136,112:164,135:631 +1 18808056 rs7515150 G C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:115,110:149,129:737 +1 18808069 rs7528572 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:111,105:143,126:803 +1 18808292 rs2992753 C A 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:813:125,129:157,184:781 +1 18808465 rs3007718 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:649:123,131:141,157:552 +1 18808526 rs2992752 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:102,130:125,154:593 +1 18809896 rs2992745 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:125,110:169,153:1117 +1 18810344 rs2992740 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:18810344_G_T:467:98,105:129,140:841 +1 18810349 rs6667069 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:18810344_G_T:476:99,108:131,140:760 +1 18811121 rs35259167 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:603:134,108:124,98:1408 +1 18811668 rs3007719 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:498:114,98:153,128:1150 +1 18812316 rs708088 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:628:139,137:180,178:1033 +1 18813026 rs3007720 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:118,145:161,185:1290 +1 18814565 rs10907313 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:638:141,140:182,179:1369 +1 18815334 rs4920502 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:593:1,259:91,341:451 +1 18815461 rs4244375 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:619:0,275:85,354:408 +1 18816284 rs11342391 CA C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:449:120,105:0,0:247 +1 18816879 rs4501813 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,238:90,325:400 +1 18817181 rs10907314 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:120,141:144,183:1028 +1 18818701 rs6679160 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:667:137,150:177,199:1335 +1 18819478 rs11802428 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:467:109,104:122,122:909 +1 18820528 rs4540621 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:628:127,149:166,173:819 +1 18821416 rs6686713 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:151,149:175,174:1122 +1 18824180 rs4244376 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,243:63,289:413 +1 18825441 rs6682329 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:664:0,289:113,386:414 +1 18826208 rs2143319 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:500:101,112:43,36:1011 +1 18826247 rs2179505 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:524:111,122:34,28:802 +1 18826465 rs6695257 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:139,116:172,154:1092 +1 18826829 rs6697982 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:115,131:159,175:1328 +1 18827050 rs10907315 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:656:139,153:176,193:1236 +1 18827843 rs6660771 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:602:137,120:42,38:755 +1 18827893 rs2015465 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:539:114,114:40,33:788 +1 18827938 rs2143318 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:544:111,110:49,42:1039 +1 18828003 rs2143317 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:497:96,120:121,149:589 +1 18828046 rs2143316 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:557:105,119:154,157:773 +1 18829013 rs59480987 TA T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:399:95,96:65,87:266 +1 18829030 rs12132942 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:489:125,127:68,102:668 +1 18829282 rs72943658 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:18829282_G_A:317:55,57:26,14:502 +1 18829298 rs78943536 C A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:18829282_G_A:278:48,46:20,18:647 +1 18829304 rs79821741 C G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:18829282_G_A:264:45,41:23,17:631 +1 18829313 rs78987110 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:18829282_G_A:245:43,37:19,11:459 +1 18829672 rs4920327 G A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:599:140,151:149,153:539 +1 18829741 rs4920505 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:613:157,131:171,137:544 +1 18829866 rs4920328 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:618:154,136:181,142:563 +1 18829962 rs11584404 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:652:142,141:196,171:1140 +1 18830017 rs11585128 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:119,130:162,155:706 +1 18830099 rs11585138 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:110,120:144,146:711 +1 18830189 rs11582933 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:149,102:171,131:598 +1 18830762 rs11261026 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:643:195,187:126,131:1205 +1 18830909 rs12080893 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:746:174,176:194,208:652 +1 18830939 rs11583417 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:758:182,172:208,206:881 +1 18831012 rs12083039 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:834:194,196:228,216:981 +1 18831120 rs55786092 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:711:163,163:188,199:1165 +1 18831563 rs1120232 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:565:0,257:67,319:398 +1 18832255 rs4920332 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:138,155:160,175:756 +1 18832314 rs926526 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:141,156:164,179:790 +1 18832620 rs926525 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:662:170,220:105,145:1346 +1 18832820 rs2356242 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:130,150:174,170:1206 +1 18835504 rs2745304 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:739:182,159:213,177:912 +1 18836065 rs72646436 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:595:122,154:140,171:838 +1 18836137 rs2244796 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:120,149:143,160:587 +1 18837047 rs56150119 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:543:144,167:96,129:750 +1 18838322 rs17351871 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:502:118,101:151,128:1163 +1 18838412 rs72646439 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:142,103:175,141:1130 +1 18839126 rs2745302 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:684:163,154:186,187:936 +1 18839394 rs2294656 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:683:153,149:191,187:1176 +1 18842289 rs2745301 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:729:153,180:188,218:730 +1 18842330 rs2745300 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:748:0,339:90,422:459 +1 18842476 rs2816020 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:710:176,156:200,177:807 +1 18842760 rs2223585 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18842760_A_G:681:151,144:194,189:1253 +1 18842766 rs9439705 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:18842760_A_G:658:139,143:190,188:1169 +1 18843834 rs9439664 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18843834_G_A:849:205,209:224,227:850 +1 18843836 rs9439706 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18843834_G_A:842:200,207:220,225:850 +1 18844339 rs1118006 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:638:168,173:142,149:354 +1 18844478 rs72648715 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:623:167,126:187,142:718 +1 18844848 rs2179504 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:657:153,155:181,172:691 +1 18846003 rs72648716 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:810:182,181:227,219:1098 +1 18846418 rs72648717 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:770:167,181:214,208:815 +1 18846952 rs56192491 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:698:158,151:202,190:988 +1 18847003 rs56370094 T A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:18847003_T_A:678:183,158:183,158:99 +1 18847004 rs56278806 T A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:18847003_T_A:679:184,158:184,158:198 +1 18847742 rs72648718 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:741:204,142:49,47:1365 +1 18847919 rs56052999 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:721:163,160:193,202:1380 +1 18848180 rs56354177 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:537:116,105:167,146:1046 +1 18848414 rs55905945 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:664:149,153:192,179:893 +1 18848557 rs80208233 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18848557_C_T:680:161,166:179,190:941 +1 18848561 rs112509198 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18848557_C_T:686:168,159:191,183:942 +1 18848567 rs2816023 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:712:0,332:69,390:642 +1 18848633 rs72648720 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:682:156,156:183,183:882 +1 18848842 rs72648721 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:816:205,176:235,194:744 +1 18849015 rs111851449 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:670:136,174:164,194:495 +1 18849234 rs112202039 C CTCTG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:671:180,137:20,19:576 +1 18849268 rs71575886 GAAAA G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:745:177,161:52,40:1086 +1 18849558 rs72648725 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:719:151,168:197,204:984 +1 18849748 rs72648726 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:800:182,191:221,213:949 +1 18849800 rs72648727 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:853:204,191:232,233:1261 +1 18849987 rs72648728 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:629:147,136:174,174:1195 +1 18850076 rs72648729 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:605:154,181:0,0:1051 +1 18850097 rs368611911 TTCCCTCCCTCCC T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:446:88,132:0,0:244 +1 18850157 rs72648730 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:594:132,154:0,0:404 +1 18850334 rs72648731 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:706:169,158:195,175:1127 +1 18852735 rs72648733 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:128,141:164,169:994 +1 18853369 rs34638870 T TC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:138,139:23,29:811 +1 18854369 rs72648734 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:484:98,124:116,148:858 +1 18854752 rs72648735 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:451:86,115:14,34:453 +1 18863808 rs72648738 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:550:114,121:147,167:892 +1 18872413 rs2745329 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,266:75,322:456 +1 18873121 rs72942578 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:366:0,146:49,195:336 +1 18873615 rs2816036 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:546:0,246:66,303:411 +1 18873981 rs11261031 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:446:0,210:0,210:237 +1 18874253 rs4375229 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:117,116:130,136:805 +1 18874707 rs11261032 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:384:1,154:73,213:398 +1 18875199 rs2745328 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:454:0,195:78,263:399 +1 18876408 rs2745327 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:507:0,218:109,307:569 +1 18877029 rs12121334 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:585:0,261:82,329:451 +1 18877325 rs56406666 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:662:0,280:126,391:581 +1 18877477 rs16862061 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:522:0,232:71,295:406 +1 18878678 rs2745326 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:537:1,234:79,299:420 +1 18880575 rs957463 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,272:80,339:431 +1 18880908 rs2745324 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:537:0,247:70,304:417 +1 18882231 rs725387 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:499:0,218:73,282:399 +1 18882489 rs10907320 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:530:0,233:84,300:380 +1 18883047 rs10907321 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,248:60,295:410 +1 18883515 rs6667918 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:475:0,214:49,257:335 +1 18885499 rs7520109 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:582:2,269:72,317:428 +1 18885736 rs2745322 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:711:0,325:96,389:546 +1 18885847 rs11800887 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:681:0,299:96,392:459 +1 18886074 rs55998142 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:106,124:144,154:766 +1 18887058 rs6603904 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:650:0,283:84,364:420 +1 18888055 . A AATAT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:450:0,222:0,0:160 +1 18888419 rs72648746 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:480:112,111:128,128:415 +1 18888609 rs7540936 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:568:0,256:76,328:392 +1 18888627 rs7532048 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:557:1,251:66,311:386 +1 18891233 rs11261034 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,262:72,331:379 +1 18891352 rs2816042 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,234:68,298:296 +1 18892063 rs2816043 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,222:95,301:490 +1 18894409 rs76644082 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:145,134:174,168:1075 +1 18894647 rs72648753 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:645:144,141:178,182:1243 +1 18894930 rs72648754 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:660:0,282:125,386:606 +1 18896482 rs72648756 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:523:99,128:137,160:903 +1 18897505 rs12131648 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:751:153,188:193,211:1072 +1 18902856 rs12077732 A T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:448:151,118:103,77:668 +1 18903563 rs2816060 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,248:96,331:462 +1 18903800 rs55998024 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:125,140:162,180:1129 +1 18905298 rs6658147 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18905298_C_G:545:112,115:151,160:1017 +1 18905304 rs6658149 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:18905298_C_G:535:108,111:142,163:836 +1 18905422 rs138833943 CA C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:488:95,112:32,29:703 +1 18905451 rs6603905 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:111,137:25,25:600 +1 18906195 rs4920515 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:716:0,342:0,329:362 +1 18907484 rs733813 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:130,111:157,140:627 +1 18908246 . C CTATTATTAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:332:0,94,84:0,0,0:259 +1 18908246 . CTATTATTATTATTATTAT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:332:0,94,84:0,0,0:259 +1 18908865 rs12566790 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:128,145:151,174:727 +1 18910590 rs72648767 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:495:110,108:145,133:899 +1 18911226 rs714043 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:498:98,113:135,152:1124 +1 18911347 rs2745309 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:99,128:142,164:1038 +1 18911504 rs56184646 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:721:171,155:208,187:1153 +1 18911673 rs2745308 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:567:0,252:62,314:344 +1 18911817 rs116511899 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:123,133:152,172:781 +1 18912603 rs6674559 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:130,107:173,147:970 +1 18912809 rs10650516 C CAAA 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:407:103,85:87,67:234 +1 18913558 rs4920334 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:158,108:180,133:871 +1 18913618 rs4920516 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:154,103:184,126:801 +1 18913834 rs4920335 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:128,128:161,162:1273 +1 18914104 rs2816064 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:132,124:162,157:1238 +1 18914423 rs2816065 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:132,137:152,174:1007 +1 18915217 rs140696310 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:726:145,182:174,214:686 +1 18915257 rs2982489 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:676:0,323:45,368:306 +1 18915934 rs2982488 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:642:0,295:0,276:485 +1 18917997 rs145928863 A AT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:449:112,107:0,0:259 +1 18918788 rs74917365 TA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:550:124,126:24,29:493 +1 18918868 rs2255754 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:588:143,151:18,8:451 +1 18921589 rs1964817 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:412:0,133:54,54:389 +1 18921867 rs12141225 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:539:123,129:144,146:570 +1 18922978 rs10605438 GAA G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:492:99,122:90,110:176 +1 18923048 rs6673822 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:752:2,320:93,93:475 +1 18923332 rs2816066 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:553:0,248:70,316:341 +1 18924046 rs2816067 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,245:70,310:374 +1 18924813 rs2745307 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:548:0,241:78,302:442 +1 18934398 rs55758406 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:132,116:132,133:429 +1 18946959 rs12125532 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:530:128,113:154,135:763 +1 18957180 rs72648787 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:442:81,81:47,58:977 +1 19004575 rs11349871 GA G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:305:0,138:0,138:99 +1 19004709 rs570242 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:643:0,289:64,351:367 +1 19006152 rs618941 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:588:0,259:86,329:460 +1 19007593 rs57928464 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:391:65,74:85,103:548 +1 19008873 rs683734 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:601:0,277:57,324:386 +1 19010767 rs72650313 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:128,103:156,127:891 +1 19011242 rs72650314 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19011242_G_A:580:123,116:174,173:1569 +1 19011245 rs72650315 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19011242_G_A:574:123,117:169,171:1466 +1 19011605 rs866448 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:547:0,234:98,322:475 +1 19011722 rs860370 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:636:0,293:75,347:352 +1 19012462 rs556630 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:469:0,193:85,275:421 +1 19012764 rs2860130 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:488:116,117:126,130:910 +1 19012781 rs553934 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:491:1,229:72,268:530 +1 19013645 rs524568 A C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:491:0,219:53,53:387 +1 19014865 rs7527312 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:682:166,148:194,176:918 +1 19015387 rs577106 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:669:135,145:187,205:1066 +1 19015592 rs575290 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:528:0,238:67,298:312 +1 19015628 rs574590 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:561:126,122:160,144:844 +1 19015728 rs671887 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19015728_C_T:629:0,286:0,262:1028 +1 19015729 rs573655 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:19015728_C_T:627:148,136:132,128:1154 +1 19015989 rs571626 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:544:0,240:72,305:376 +1 19016522 rs545793 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:134,124:153,129:573 +1 19016932 rs72650320 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:124,113:160,149:875 +1 19017200 rs55914178 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:115,153:152,201:834 +1 19017582 rs480856 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:124,106:158,129:614 +1 19017855 rs2743208 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:651:0,282:104,369:513 +1 19018131 rs2076021 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,259:86,328:397 +1 19019351 rs12741080 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:403:88,83:113,106:649 +1 19020268 rs76421221 G GGC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:123,120:36,37:838 +1 19020761 rs598193 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:509:104,130:124,151:520 +1 19020819 rs12750926 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:493:122,115:122,115:380 +1 19020955 . AAAAT A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:305:1,80,97:0,0,0:259 +1 19020955 . AAAATAAATAAATAAAT A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:305:1,80,97:0,0,0:259 +1 19021373 rs585075 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:140,144:47,21:728 +1 19021420 rs35562971 G GC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:130,113:21,18:599 +1 19021544 rs12760805 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:572:139,122:169,147:1044 +1 19021702 rs34926391 T TAA 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:521:143,127:124,102:265 +1 19024384 rs67190982 TG T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:431:95,99:32,20:655 +1 19024766 rs139356885 T TACACAC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:357:93,74:0,0:244 +1 19026488 rs35966408 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:111,111:152,150:1110 +1 19026571 rs71910241 CGTGT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:231:46,65:0,0:259 +1 19027239 rs2743201 A G 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_10XGATKhaplo_filt,CS_IonExomeTVC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:464:87,92:121,129:772 +1 19028316 rs2789322 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19028316_G_C:558:120,118:167,159:1492 +1 19028317 rs2841097 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19028316_G_C:558:119,119:166,160:1492 +1 19028408 rs526265 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:601:0,278:65,332:383 +1 19029027 rs35203407 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:133,128:157,151:881 +1 19029486 rs1416465 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:542:114,128:139,165:826 +1 19029546 rs1416464 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:115,127:153,159:1068 +1 19030036 rs57757434 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:648:139,154:47,38:1027 +1 19031555 rs12035204 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19031555_G_A:547:129,113:159,141:764 +1 19031561 rs12040229 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19031555_G_A:565:132,119:165,149:918 +1 19031894 rs515739 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:519:113,93:162,152:1285 +1 19031966 rs58305507 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:514:115,104:147,147:1023 +1 19032272 rs2236824 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:114,122:151,176:717 +1 19033143 rs35641796 AT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,217:98,98:544 +1 19033575 rs589463 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:566:0,279:40,300:350 +1 19033593 rs568991 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:542:0,275:27,279:344 +1 19034199 rs586698 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:442:0,178:67,245:374 +1 19035393 rs501080 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:518:0,229:69,292:377 +1 19035732 rs9439681 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:500:0,220:56,272:356 +1 19036753 rs2236823 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:110,127:155,154:774 +1 19037550 rs9439726 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:575:0,256:89,332:481 +1 19038628 rs148615260 C CTGATGGTCAGTGTGAAT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:378:0,173:52,52:342 +1 19039502 rs3819344 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,243:76,305:425 +1 19040619 rs10907327 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:513:0,234:41,275:311 +1 19041262 rs2743197 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:552:0,252:56,295:383 +1 19041598 rs6670751 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:426:0,196:46,232:334 +1 19043138 rs9439729 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:497:0,227:65,266:444 +1 19043478 rs202160613 C CG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:405:0,197:0,0:285 +1 19044877 rs624761 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:519:0,232:59,288:337 +1 19045819 rs609959 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:461:0,212:45,253:296 +1 19046188 rs851124 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:520:117,124:136,141:752 +1 19046299 rs3216187 T TG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,240:55,55:378 +1 19046485 rs851123 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:132,118:154,138:717 +1 19047314 rs518459 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:472:0,194:93,278:464 +1 19047403 rs582451 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:436:0,193:62,243:360 +1 19047690 rs12141930 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:496:0,218:70,284:378 +1 19047725 rs688710 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:501:0,222:75,288:406 +1 19047932 rs523997 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,226:86,301:356 +1 19048356 rs12044947 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:126,99:161,122:945 +1 19049384 rs742078 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:144,128:174,169:1457 +1 19049615 rs2236817 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:128,111:151,130:774 +1 19049754 rs2236816 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:124,113:161,169:1252 +1 19049946 rs2236815 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:603:0,270:90,336:485 +1 19050030 rs2236814 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:123,120:147,146:1007 +1 19050734 rs5772823 G GC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:115,116:27,31:648 +1 19050896 rs643644 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:536:0,247:51,295:309 +1 19050907 rs643310 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,236:59,293:356 +1 19051594 rs1997656 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:631:0,272:118,375:469 +1 19052639 . A AGT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:217:52,38:0,0:147 +1 19053547 rs72650351 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:540:116,123:154,144:557 +1 19053577 rs72650352 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:592:145,125:161,159:965 +1 19053747 rs199698133 AAC A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:496:101,119:0,0:639 +1 19053780 . T CA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:185:0,0:0,0:152 +1 19054657 rs12143689 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:454:94,99:137,125:795 +1 19054731 rs2236809 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:469:90,120:121,142:866 +1 19054978 rs2236808 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:111,137:146,159:926 +1 19055083 rs61760728 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:108,119:130,141:503 +1 19055120 rs2236807 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:480:104,92:131,118:602 +1 19055247 rs202129158 T TACTCAGG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:443:79,94:28,33:634 +1 19055531 rs9439685 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:518:119,117:145,137:829 +1 19056260 rs6683313 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:147,120:179,142:945 +1 19056382 rs2743189 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:137,110:181,148:1167 +1 19056581 rs2789342 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,273:81,321:394 +1 19057127 rs2236806 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:473:0,223:30,244:302 +1 19057422 rs742076 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:389:75,92:12,14:350 +1 19057480 rs84353 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:456:0,198:54,248:362 +1 19057553 rs17352351 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:522:0,239:56,279:374 +1 19057730 rs2236805 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:474:0,222:46,257:351 +1 19058929 rs2236800 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:593:0,284:56,314:404 +1 19059317 rs2236799 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:567:0,255:77,315:454 +1 19059471 rs9439731 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19059471_T_C:618:0,267:0,260:462 +1 19059473 rs9439732 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19059471_T_C:618:0,267:0,260:462 +1 19059654 rs3216185 CT C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:517:0,227:72,72:463 +1 19066232 rs603090 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:532:0,230:91,306:478 +1 19067368 rs685300 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:562:1,255:82,313:458 +1 19067733 rs9439686 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:513:112,119:143,141:618 +1 19068713 rs113718862 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:357:77,45:34,27:682 +1 19069342 rs9439687 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:126,110:156,136:1018 +1 19069844 rs551027 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:591:1,259:86,337:435 +1 19072926 rs485874 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:668:138,146:179,202:939 +1 19074803 rs6672534 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:486:116,88:157,122:1077 +1 19075225 rs851114 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:523:0,222:102,302:543 +1 19075898 rs12119666 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:588:150,121:178,141:797 +1 19077291 rs578988 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:632:0,294:64,336:441 +1 19077825 rs626600 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:623:127,151:160,189:1202 +1 19079175 rs9439738 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:708:172,136:217,177:1364 +1 19079280 rs374780004 TAC T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:651:149,148:44,30:760 +1 19079950 rs851113 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:132,125:167,161:1283 +1 19080055 rs479064 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:619:147,129:178,158:1140 +1 19080506 rs1160680 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:698:0,324:84,379:501 +1 19083540 rs9439740 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:571:157,170:0,0:1069 +1 19083634 rs60251235 TCTG T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:733:177,160:29,28:890 +1 19085941 rs9439742 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:495:125,113:136,118:432 +1 19086494 rs495759 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:459:0,200:58,258:326 +1 19086869 rs591009 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:463:0,213:51,252:379 +1 19087618 rs685107 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:141,115:178,159:1205 +1 19087765 rs851121 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:645:0,282:94,366:480 +1 19087828 rs573966 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:629:0,289:74,341:434 +1 19088899 rs669138 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:1,236:106,328:492 +1 19090080 rs510843 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:746:0,336:122,418:649 +1 19090175 rs509990 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:708:0,327:79,392:420 +1 19091182 rs638256 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,257:71,328:382 +1 19094738 rs7414734 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:132,149:181,184:1039 +1 19094896 rs7416370 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:116,160:155,181:1154 +1 19097350 rs2153194 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:530:116,118:147,149:996 +1 19097977 rs4920532 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:478:105,99:143,124:858 +1 19099783 rs149816575 G GAAAGCCCTGTCTGTTAC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:655:137,139:44,61:928 +1 19100057 rs6603908 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:698:158,155:194,196:1366 +1 19102065 rs72650382 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:495:105,115:133,142:864 +1 19102509 rs2841087 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:470:107,106:131,124:763 +1 19102998 . A AACACAC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:250:60,54:60,54:198 +1 19104110 rs2789323 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:501:110,106:28,27:549 +1 19104381 rs4920344 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:652:123,157:156,210:1053 +1 19105580 rs6697715 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:450:108,99:129,116:739 +1 19106672 rs7521983 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:656:130,138:127,134:1529 +1 19106791 rs4920533 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:128,138:178,153:815 +1 19107360 rs6667878 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:118,118:158,155:1254 +1 19107476 rs6667983 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:109,121:148,149:715 +1 19108530 rs6656911 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:119,129:157,159:836 +1 19111072 rs11267925 GTGGCCGTGGCCA G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:504:136,110:23,10:386 +1 19111725 rs4920347 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:529:114,130:128,160:616 +1 19111764 rs9439697 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:110,129:150,153:643 +1 19111794 rs4920348 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:525:105,133:137,154:719 +1 19111925 rs4920538 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:626:143,140:190,151:652 +1 19112850 rs7413291 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:578:135,123:158,158:915 +1 19113058 rs6603910 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:727:177,145:221,173:1002 +1 19113512 rs4920539 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:757:170,169:207,210:1220 +1 19115116 rs199781432 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:142,123:19,21:474 +1 19115689 rs7529317 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19115689_C_T:782:170,183:209,218:1559 +1 19115706 rs7529319 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19115689_C_T:738:168,168:208,198:1159 +1 19116962 rs72650393 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:631:141,152:160,183:870 +1 19117479 rs3935180 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:516:145,158:91,100:1327 +1 19117792 rs9439699 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:104,122:143,141:979 +1 19118681 rs12240016 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:519:132,111:145,129:761 +1 19119401 rs55920713 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:652:146,145:182,175:1240 +1 19119567 rs12568737 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:473:108,91:147,128:944 +1 19119606 rs7549129 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:482:116,85:155,131:906 +1 19119674 rs12567384 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:442:101,85:31,33:721 +1 19119910 rs11261070 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:112,125:163,157:1033 +1 19120145 rs34914165 CA C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:522:117,94:42,50:1107 +1 19120744 rs76440749 CAAATA C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:139,126:54,40:1138 +1 19121756 rs7539659 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:571:129,123:153,161:603 +1 19122151 rs7418584 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:503:118,109:137,141:741 +1 19122284 rs7418624 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:510:120,93:151,126:909 +1 19122672 rs11588793 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:122,107:153,158:1092 +1 19123261 rs34829081 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:134,105:179,143:911 +1 19123567 rs9439750 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:121,126:150,162:804 +1 19124091 rs11586712 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:672:197,192:137,130:1403 +1 19124603 rs139783307 C CCCCG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:570:125,105:38,40:836 +1 19125784 rs12042960 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:566:134,113:170,148:1127 +1 19126088 rs12043029 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:473:123,142:97,104:476 +1 19126199 rs11261074 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:122,136:177,185:1391 +1 19126626 rs4920352 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:117,132:172,166:1218 +1 19128013 rs57362334 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:610:174,158:140,125:580 +1 19128884 rs55962532 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:850:180,273:200,198:1082 +1 19130827 rs4074733 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:138,113:164,153:999 +1 19131001 rs4074734 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:498:111,91:155,138:1155 +1 19131775 rs4075770 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:405:80,91:109,116:585 +1 19134143 rs7411042 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:484:88,110:43,36:1064 +1 19134351 rs5772828 AC A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:498:100,124:29,26:755 +1 19134834 rs7411577 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:114,135:143,152:690 +1 19136105 rs6603913 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:739:162,183:187,213:1298 +1 19137760 rs12064747 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:123,127:162,158:1062 +1 19138047 rs12057332 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:612:115,128:103,124:1223 +1 19138115 rs7525495 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:540:103,123:61,50:1105 +1 19138295 rs7521204 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:479:106,100:151,124:928 +1 19138953 rs11261076 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:141,146:158,162:1051 +1 19139517 rs12063142 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:533:119,113:142,159:1097 +1 19139831 rs112446770 A AAAAC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:124,115:40,39:1104 +1 19140544 rs7415679 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:125,124:152,158:1093 +1 19141192 rs4920543 A C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:339:54,70:39,33:908 +1 19142259 rs72651813 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:481:111,116:126,120:527 +1 19142952 rs4920545 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:483:109,110:137,120:601 +1 19143482 rs6704438 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:19143482_G_A:654:157,152:39,42:1309 +1 19143494 rs6673195 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:19143482_G_A:646:157,147:44,34:1041 +1 19144271 rs11261080 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:470:106,114:124,127:610 +1 19145041 rs12023286 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:473:113,99:137,123:626 +1 19145099 rs12026106 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:507:112,104:150,137:1009 +1 19145137 rs12028479 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:522:117,108:151,138:1070 +1 19145283 rs61765796 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:117,144:146,164:862 +1 19145610 rs6603915 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:115,120:154,153:884 +1 19145633 rs6603916 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:568:128,117:162,150:902 +1 19145676 rs6603917 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:133,128:175,160:926 +1 19147283 rs72651814 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:575:121,125:170,157:742 +1 19147674 rs72651815 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19147674_G_A:683:161,148:189,184:976 +1 19147682 rs67017285 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19147674_G_A:676:155,147:185,185:1080 +1 19147761 rs12125880 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19147761_A_G:668:154,134:203,172:1300 +1 19147771 rs12126802 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19147761_A_G:646:142,132:191,179:1367 +1 19147777 rs12126803 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19147761_A_G:619:141,124:182,167:1226 +1 19147846 rs6686865 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:141,123:185,158:901 +1 19148234 rs4920546 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19148234_T_C:559:119,126:160,159:965 +1 19148241 rs4920547 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19148234_T_C:548:118,119:160,156:1069 +1 19148259 rs4920548 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:113,130:150,168:1150 +1 19149220 rs72651818 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:441:95,105:110,115:423 +1 19149527 rs11261081 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:133,141:149,153:778 +1 19150076 rs6679611 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:126,132:149,145:909 +1 19150473 rs72651821 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:19150473_C_T:575:125,119:169,161:1295 +1 19150480 rs61765797 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:19150473_C_T:592:128,119:181,168:1404 +1 19150875 rs72651824 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:480:103,111:133,126:779 +1 19151248 rs67020981 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:595:137,115:179,159:1285 +1 19152760 rs72651826 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:459:109,104:125,117:657 +1 19152981 rs61765799 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:455:114,94:135,110:718 +1 19153429 rs72651827 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:474:97,104:136,139:1042 +1 19153651 rs72651828 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:131,137:178,182:1007 +1 19153969 rs6684577 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:628:138,154:157,185:928 +1 19154065 rs6674964 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:635:151,138:178,166:833 +1 19154229 rs6675108 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:120,118:164,153:856 +1 19155469 rs6688553 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:137,126:165,145:893 +1 19155638 rs6698838 T C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:437:88,105:116,130:449 +1 19155667 rs6695865 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:469:97,113:119,139:898 +1 19155969 rs6691420 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:138,137:169,171:1147 +1 19156042 rs75682182 CT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:116,125:25,24:552 +1 19156236 rs12564570 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:143,122:163,149:1036 +1 19156323 rs12565195 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:669:147,147:54,53:1476 +1 19156546 rs72651831 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19156546_A_G:672:159,147:174,172:745 +1 19156561 rs12565403 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19156546_A_G:665:151,145:179,175:1016 +1 19156602 rs72651832 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:662:137,141:179,191:1123 +1 19156866 rs6685177 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:716:177,159:195,179:784 +1 19156935 rs6685199 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:679:149,157:177,201:969 +1 19157480 rs6703174 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:128,131:167,155:711 +1 19157877 rs72651835 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19157877_C_A:575:127,107:192,149:1144 +1 19157884 rs116517100 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19157877_C_A:557:124,102:178,148:1212 +1 19157894 rs6702947 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19157877_C_A:554:122,104:168,156:1220 +1 19157909 rs6657320 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19157877_C_A:518:115,101:156,144:1135 +1 19157933 rs6603918 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19157877_C_A:578:116,126:159,175:1154 +1 19158092 rs72651837 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:646:142,126:200,188:1417 +1 19158194 rs72651838 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:175,142:193,165:753 +1 19158941 rs11261083 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:507:101,105:147,148:1097 +1 19159141 rs111287752 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:514:121,102:148,142:1015 +1 19159250 rs11584153 A T 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:364:0,186:0,175:230 +1 19159657 rs11261084 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:496:91,111:140,152:944 +1 19160160 rs4920549 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:122,155:154,197:1177 +1 19160523 rs12038239 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:145,116:182,153:1516 +1 19161362 rs78916734 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:135,136:171,180:1227 +1 19163058 rs72651841 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:670:157,146:195,171:1207 +1 19163435 rs66828855 CAT C 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:456:106,94:31,20:481 +1 19164018 rs68160056 G C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:486:85,94:59,59:1588 +1 19164023 rs111621010 T TAAG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:454:81,88:56,52:696 +1 19165630 rs4920554 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:518:110,113:147,145:960 +1 19168533 rs12082240 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:568:131,92:176,142:1341 +1 19169588 rs12137730 A C 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:19169588_A_C:680:180,178:162,165:297 +1 19169595 rs12133364 G A 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:19169588_A_C:663:175,175:157,161:297 +1 19169613 rs6662718 G A 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:19169588_A_C:585:144,169:128,151:297 +1 19170401 rs72651845 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:802:161,193:205,248:1598 +1 19170492 rs61761365 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:813:195,178:225,218:984 +1 19170894 rs12409115 T A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:687:143,185:178,184:683 +1 19170946 rs12408808 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:706:137,178:169,227:1167 +1 19171253 rs74258915 AAAG A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:397:97,94:10,8:358 +1 19172486 rs28451477 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:111,110:150,148:813 +1 19172872 rs28697013 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:514:114,95:152,151:1169 +1 19173614 rs7513755 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:658:143,140:185,197:1615 +1 19173895 rs35786194 G T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19173895_G_T:456:86,116:42,23:814 +1 19173896 rs36105111 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19173895_G_T:458:86,118:42,23:814 +1 19175276 rs4920556 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:646:143,146:175,187:819 +1 19175846 rs28374389 T C 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:94,110:129,145:952 +1 19176254 rs6675384 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:534:122,116:149,149:727 +1 19176531 rs6666162 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19176531_G_A:458:103,87:155,118:1066 +1 19176532 rs6675619 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19176531_G_A:457:103,86:155,117:1066 +1 19176908 rs4076838 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:573:126,127:123,123:880 +1 19176941 rs4076839 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:551:119,141:113,133:459 +1 19177540 rs72948201 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:582:128,130:166,164:1089 +1 19177830 rs4920562 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:567:107,112:167,161:1292 +1 19179104 rs4920564 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:568:133,128:153,148:875 +1 19179138 rs4920565 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:562:121,125:159,158:689 +1 19179824 rs4920566 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:729:181,140:238,169:689 +1 19180044 rs72651847 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:611:151,132:170,161:1202 +1 19180369 rs35408971 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19180369_C_T:621:151,120:190,165:1568 +1 19180379 rs36034229 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19180369_C_T:642:157,116:203,168:1730 +1 19181015 rs34447754 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:625:131,123:151,147:679 +1 19181082 rs28470550 A C 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:118,122:142,148:701 +1 19181393 rs35874116 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:681:126,132:159,155:701 +1 19181740 rs35536592 GC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:128,120:45,33:854 +1 19181947 rs35454886 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:138,143:162,165:1073 +1 19182995 rs34465168 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:648:135,144:174,199:1376 +1 19184077 rs68081213 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:702:133,119:40,39:989 +1 19184804 rs142543099 TCAC T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:578:143,109:50,45:1172 +1 19185351 rs66461609 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:628:143,128:192,170:1629 +1 19186129 rs9701796 G C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:114,120:156,150:1240 +1 19186260 rs9700646 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:537:109,120:136,168:843 +1 19186320 rs9701803 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:112,119:151,159:1072 +1 19186735 rs72651851 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:116,135:142,167:790 +1 19186975 rs55677512 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:518:103,113:139,151:745 +1 19187131 rs11486195 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:133,133:184,177:964 +1 19187203 rs11486194 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:511:110,106:153,137:737 +1 19187380 rs9701226 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:540:0,243:55,295:328 +1 19187434 rs9701557 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19187434_A_T:557:118,116:156,159:993 +1 19187452 rs9700837 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19187434_A_T:562:124,119:162,149:733 +1 19187649 rs11488726 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:615:132,136:161,178:764 +1 19187765 rs9330306 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19187765_A_G:466:0,221:52,266:502 +1 19187768 rs9699542 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:19187765_A_G:449:103,100:135,121:536 +1 19187941 rs28405907 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,236:67,285:406 +1 19188015 rs72651854 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:142,113:171,134:782 +1 19188171 rs72651855 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:118,114:159,154:1243 +1 19188226 rs72651856 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:432:94,91:126,113:582 +1 19188456 rs28410948 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:373:0,163:57,208:397 +1 19189433 rs28517356 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,269:61,314:397 +1 19189756 rs12736699 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:19189756_G_C:623:136,124:118,116:1872 +1 19189759 rs28695655 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|0:19189756_G_C:620:124,133:116,119:1923 +1 19189859 rs9330307 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:19189859_G_C:546:0,243:61,304:501 +1 19189870 rs11488727 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19189859_G_C:557:119,122:149,161:695 +1 19189986 rs9793673 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:117,137:161,168:736 +1 19190773 rs28588822 A G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:506:108,84:35,30:736 +1 19191326 rs9662598 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:108,108:57,41:1216 +1 19191332 rs34929678 CTT C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:507:96,107:68,45:1216 +1 19192040 rs9730442 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:562:0,233:115,341:925 +1 19192053 rs59377854 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:115,113:172,172:1317 +1 19192760 rs9330308 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:647:0,283:98,372:393 +1 19193116 . CTTTTTTT C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:381:21,108,74:1,86,74:465 +1 19193116 . CTTTTTTTT C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:381:21,108,74:1,86,74:465 +1 19193232 rs35930993 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,247:58,58:408 +1 19193480 rs12741454 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:135,130:170,148:711 +1 19193881 rs72651862 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:516:110,117:133,152:832 +1 19193918 rs12745794 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19193918_T_C:618:137,129:179,170:1358 +1 19193925 rs12729853 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19193918_T_C:625:142,136:179,168:1260 +1 19193952 rs72651864 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:687:143,144:197,193:1408 +1 19194056 rs72651865 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:682:207,180:155,131:1204 +1 19194086 rs12734221 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:624:0,277:71,346:290 +1 19194338 rs28510279 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:132,118:159,144:479 +1 19194585 rs56328014 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:107,125:147,150:852 +1 19194939 rs72651868 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:693:144,165:184,203:1211 +1 19195280 rs9793028 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:602:135,133:166,166:1000 +1 19196814 rs9659393 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,289:57,325:416 +1 19197245 rs201681468 ATT A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:358:0,160:0,160:99 +1 19197635 rs56206852 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:640:0,256:98,332:496 +1 19198576 rs1138267 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:514:0,213:98,304:487 +1 19198637 rs3202002 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:525:0,222:84,84:493 +1 19198681 rs11311839 GC G 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:487:0,217:35,35:245 +1 19199221 rs11740 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:689:0,256:106,327:634 +1 19199473 rs28700162 T A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:738:0,258:114,362:573 +1 19199723 rs28482942 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:628:0,275:88,352:464 +1 19200180 rs7555171 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,254:96,344:450 +1 19200356 rs28656793 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:685:0,300:117,389:605 +1 19200908 rs28529092 G C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:794:0,261:59,307:501 +1 19201184 rs6665917 G C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:541:0,234:90,90:518 +1 19201211 rs35163726 T TG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:484:0,211:64,64:408 +1 19201623 rs28663527 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:483:0,210:70,280:377 +1 19201665 rs28481840 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:461:0,210:45,255:307 +1 19201956 rs2230708 A G 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:538:0,209:69,270:433 +1 19202507 rs6426802 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:575:0,270:67,320:405 +1 19202770 rs7550822 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,263:66,319:403 +1 19202896 rs2230707 G A 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:615:110,108:110,108:610 +1 19202917 rs7550938 T C 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19202917_T_C:594:0,213:0,210:365 +1 19202926 rs2230706 T C 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19202917_T_C:584:0,210:0,207:328 +1 19203333 rs28493067 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:123,133:143,169:847 +1 19203997 rs2230705 C G 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:100,115:119,139:654 +1 19204154 rs6426813 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:453:0,208:0,205:252 +1 19204173 rs6426814 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:459:102,105:101,103:564 +1 19204309 rs41302007 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:488:108,120:122,146:558 +1 19204645 rs7366122 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:566:141,125:22,18:601 +1 19205124 rs28657562 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:550:125,107:172,149:1018 +1 19205144 rs72651875 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:129,113:169,151:1136 +1 19205510 rs7364434 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:126,138:172,173:1285 +1 19206020 rs7365978 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:140,126:186,158:1005 +1 19206254 rs7364713 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:564:112,146:133,172:534 +1 19206744 rs11320823 CG C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:471:0,229:19,19:331 +1 19208145 rs112548638 G GGGTTGCCT 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:415:0,178:76,76:233 +1 19208944 rs28566028 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,238:63,301:306 +1 19209543 rs6426611 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_IonExomeTVC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:553:1,245:53,293:339 +1 19210816 rs7365362 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:525:1,238:1,232:279 +1 19213920 . T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:19213920_T_C:540:111,97:111,97:1759 +1 19213921 rs34527859 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:19213920_T_C:541:112,97:112,97:1759 +1 19214050 rs9426642 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:550:110,121:146,157:788 +1 19214561 rs72651879 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:473:119,81:44,34:925 +1 19214633 rs72651880 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:511:124,93:159,129:1018 +1 19215061 rs28523548 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:620:157,133:178,154:712 +1 19215418 rs4912075 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:130,117:176,147:754 +1 19215440 rs4911985 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:141,127:188,152:712 +1 19215834 rs941495 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:548:0,249:68,307:392 +1 19216428 rs4592275 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:117,111:146,136:616 +1 19220442 rs28709274 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:707:0,328:65,383:395 +1 19220748 rs16862341 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:640:1,286:77,351:433 +1 19221431 rs28715641 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:429:99,71:110,97:708 +1 19223927 rs61759272 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:100,141:123,164:614 +1 19226520 rs28528764 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:769:177,169:215,217:1019 +1 19229497 rs16862353 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:473:101,109:129,135:701 +1 19230263 rs4912044 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:720:0,333:107,402:590 +1 19231477 rs2295228 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:495:100,116:130,149:909 +1 19232182 rs71676508 AGT A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:271:67,68:0,0:160 +1 19235517 rs6673711 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:118,123:156,162:1169 +1 19235606 rs6688134 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:122,104:155,158:1149 +1 19235658 rs16862355 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:520:127,103:164,129:943 +1 19236681 rs60534604 CTGGA C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:425:125,93:0,0:246 +1 19238803 rs56042056 AT A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,309:0,0:249 +1 19238942 rs16862363 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:683:1,321:76,375:397 +1 19239090 rs28685155 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:708:1,298:100,381:415 +1 19240195 rs28671457 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:515:118,116:147,127:508 +1 19240317 rs10708996 GT G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:435:113,102:0,0:248 +1 19240526 rs6426788 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:524:2,219:79,296:415 +1 19240679 rs6678879 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:19240679_A_T:559:112,128:167,151:826 +1 19240684 rs6678885 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:19240679_A_T:550:111,123:164,151:818 +1 19241167 rs28502798 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:482:94,102:134,145:892 +1 19241234 rs7530141 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:473:92,92:137,126:875 +1 19241904 rs16862370 T G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19241880_C_CA:649:128,138:63,57:1397 +1 19242346 rs28678615 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:110,114:157,154:979 +1 19242434 rs56204821 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:531:131,110:152,142:563 +1 19242486 rs7546676 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:119,134:158,185:890 +1 19243589 rs3748586 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:98,102:129,137:1138 +1 19244678 rs4912056 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:448:95,89:135,124:1158 +1 19246320 rs41273181 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:468:109,102:135,129:886 +1 19247509 rs35477144 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:792:147,128:172,159:1198 +1 19248349 rs6674201 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:132,132:185,157:888 +1 19248824 rs2180120 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:542:0,233:84,314:381 +1 19248901 rs58957999 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:544:120,111:160,153:806 +1 19249068 rs9426819 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:127,118:164,154:1025 +1 19249116 rs4603153 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:485:0,223:49,272:275 +1 19249145 rs9426696 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:488:120,97:147,129:577 +1 19249295 rs9426697 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19249295_G_C:571:132,118:174,151:1192 +1 19249320 rs6426799 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:19249295_G_C:555:0,230:110,330:399 +1 19249543 rs9426698 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:563:140,116:165,140:852 +1 19249593 rs28689517 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:581:137,127:165,149:569 +1 19250286 rs9426699 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:490:98,115:124,155:678 +1 19253600 rs60196040 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:139,105:157,139:432 +1 19255460 rs59395386 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:465:96,117:111,139:418 +1 19255671 rs6698642 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:596:124,150:152,177:914 +1 19255754 rs6674337 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:543:123,126:150,145:831 +1 19257032 rs6426803 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,254:89,324:369 +1 19257309 rs6426804 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:122,127:168,178:1308 +1 19257998 rs4333871 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:625:0,281:93,358:494 +1 19258539 rs28687442 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:456:1,200:65,261:375 +1 19258723 rs16862387 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:611:1,278:73,339:426 +1 19258801 rs7513627 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,262:104,350:519 +1 19259430 rs4912076 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:19259430_G_A:495:0,217:60,277:340 +1 19259436 rs4912077 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:19259430_G_A:494:0,216:58,274:340 +1 19259650 rs4912078 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:554:0,266:38,297:305 +1 19259729 rs4912079 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:556:0,260:39,295:300 +1 19260397 rs2103843 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,267:55,293:432 +1 19260741 rs142181786 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:410:79,95:23,30:613 +1 19260793 rs9426702 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:481:0,219:41,255:306 +1 19261241 rs992660 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:690:1,314:94,389:507 +1 19261408 rs992661 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:722:0,327:92,396:525 +1 19261533 rs28520270 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:650:0,286:93,376:458 +1 19261621 rs28550043 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:654:0,291:91,367:504 +1 19261896 rs72645642 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:511:112,97:167,127:632 +1 19263783 rs4912087 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,272:82,330:418 +1 19264586 rs34264221 CCT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:122,124:40,39:1002 +1 19264784 rs6665361 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:123,119:176,165:1194 +1 19265077 rs58636332 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:532:129,112:129,112:382 +1 19265276 rs11294307 GC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:516:0,245:26,26:324 +1 19267056 rs142740984 CGGATGGAT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:278:75,74:0,0:147 +1 19269281 rs2983108 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,276:59,326:388 +1 19269359 rs6683405 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:529:103,105:103,105:883 +1 19270746 rs6687144 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:134,136:159,167:1228 +1 19274525 rs2024727 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:117,127:154,165:1245 +1 19274679 rs2024728 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:714:145,153:206,204:1341 +1 19274771 rs4912006 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:136,147:152,170:983 +1 19274834 rs28403085 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:155,133:166,153:1003 +1 19274853 rs28657693 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:151,131:181,146:830 +1 19274897 rs28740871 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19274897_C_G:571:127,137:148,160:788 +1 19274905 rs28572023 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19274897_C_G:593:131,137:158,163:959 +1 19275059 rs28725464 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:128,148:157,184:998 +1 19275122 rs28499478 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:124,141:162,170:819 +1 19275213 rs16862396 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:531:107,128:143,148:730 +1 19275307 rs28481874 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:503:125,110:146,124:722 +1 19275528 rs28452151 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:506:113,115:31,29:767 +1 19275793 rs28648498 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:126,111:163,146:750 +1 19276045 rs4912111 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:683:128,162:184,204:1404 +1 19276340 rs28367561 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:116,131:153,168:941 +1 19276379 rs4912113 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:121,144:155,177:940 +1 19276935 rs4912117 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:133,133:160,180:1150 +1 19277058 rs4912120 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:681:158,151:196,173:872 +1 19277326 rs28413803 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:119,144:152,182:817 +1 19277429 rs28616688 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:129,107:189,169:1285 +1 19279048 rs28422004 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:752:174,157:223,197:1202 +1 19279118 rs7538579 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:741:159,176:192,219:1183 +1 19280383 rs6694507 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:126,131:170,184:1089 +1 19281311 rs4912129 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:572:117,134:139,175:1101 +1 19282944 rs4912132 G A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:565:144,139:0,0:198 +1 19282981 rs1886768 A C 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:546:8,282:0,0:216 +1 19284564 rs4912013 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:638:154,138:179,167:961 +1 19284793 rs7525508 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:605:133,138:175,160:1263 +1 19284964 rs7550348 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:693:152,150:190,189:1207 +1 19285106 rs7517799 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:120,128:170,160:774 +1 19285249 rs28634497 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:135,127:172,177:829 +1 19285397 rs28551122 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:722:163,155:198,199:1258 +1 19285652 rs28550716 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:616:145,129:188,148:937 +1 19285944 rs1886767 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:578:0,276:59,310:397 +1 19286336 rs28593253 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,289:97,366:528 +1 19286519 rs28452800 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:584:134,127:168,163:1032 +1 19286639 rs28510633 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:134,128:186,179:1187 +1 19287299 rs28540851 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:652:150,157:167,180:1063 +1 19287726 rs7553003 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:656:173,132:199,158:1149 +1 19288004 rs141183136 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:131,132:158,158:704 +1 19288088 rs7555697 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:114,139:183,188:1075 +1 19288351 rs4912137 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:521:148,119:115,92:736 +1 19288887 . G GA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:297:4,53,66:4,53,66:198 +1 19288887 . GA G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:297:4,53,66:4,53,66:198 +1 19289127 rs28441270 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:638:0,294:63,348:390 +1 19289225 rs17388213 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:696:148,157:194,197:1169 +1 19289284 rs28687908 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:636:0,285:77,355:410 +1 19289368 rs4525069 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:665:147,149:180,183:832 +1 19289581 rs12744077 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:150,119:176,154:773 +1 19289794 rs2313163 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:609:137,134:163,176:965 +1 19289829 rs954418 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:1,267:103,359:335 +1 19290225 rs61763692 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:508:127,108:143,134:962 +1 19290285 rs28434037 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19290285_T_C:533:133,124:141,135:765 +1 19290291 rs28736811 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19290285_T_C:539:133,123:143,141:897 +1 19290397 rs6670473 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:125,114:155,141:1024 +1 19290594 rs6656419 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19290594_T_C:626:0,294:44,296:936 +1 19290595 rs6670680 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:19290594_T_C:626:141,153:154,184:1016 +1 19290967 rs6700277 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:504:105,122:126,141:836 +1 19291615 rs17384116 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:546:113,121:158,149:812 +1 19291757 rs17388255 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:19291757_A_G:535:100,132:141,162:726 +1 19291781 rs28394022 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:19291757_A_G:538:105,126:153,156:747 +1 19291820 rs28428758 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:624:144,148:38,44:1105 +1 19291858 rs16862402 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:576:137,132:42,21:642 +1 19292236 rs7556101 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:119,126:140,148:580 +1 19292355 rs4912148 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:647:0,289:84,360:387 +1 19293249 rs6680748 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:682:159,147:195,180:860 +1 19293290 rs16862410 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:726:169,168:196,196:848 +1 19293556 rs6681104 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:640:148,147:172,176:1125 +1 19294661 rs28550159 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:421:72,68:0,0:839 +1 19295006 rs28756258 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:597:140,134:161,159:865 +1 19295057 rs28429158 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:484:106,114:135,125:532 +1 19295991 rs6682349 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:671:140,162:172,201:1076 +1 19296410 rs56940360 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:584:120,129:161,160:736 +1 19296524 rs2207602 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:511:0,201:64,64:375 +1 19297205 rs17384241 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:658:0,274:100,360:497 +1 19297283 rs28635841 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:730:156,164:198,201:1072 +1 19298330 rs6658156 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:634:140,144:129,133:1029 +1 19298365 rs6703919 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:518:117,127:117,127:399 +1 19298385 rs6699045 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:519:117,125:117,125:480 +1 19298672 rs6658552 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:138,135:179,172:949 +1 19299240 rs7545729 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:533:0,243:64,295:406 +1 19299600 rs28667188 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:504:1,233:47,269:343 +1 19299915 rs17388388 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:500:0,232:74,278:474 +1 19300198 rs28635437 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:482:0,210:88,278:488 +1 19300345 rs28592704 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,261:74,323:705 +1 19300355 rs72645660 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:621:121,151:162,192:1163 +1 19300414 rs28513388 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,270:55,316:358 +1 19300427 rs28665376 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:585:0,281:47,315:324 +1 19300852 rs4912150 A C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1/1:.:471:0,234:0,234:198 +1 19301020 rs28722173 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:587:155,187:108,135:557 +1 19301116 rs4912151 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:603:0,268:67,326:390 +1 19301172 rs28531852 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:417:0,186:42,221:316 +1 19301419 rs28380130 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:575:0,283:0,278:277 +1 19301782 rs4912020 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,261:59,308:377 +1 19301793 rs4912152 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:534:0,245:53,293:348 +1 19301837 rs4912021 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:534:0,236:69,305:357 +1 19302972 rs7529375 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:499:0,223:67,284:361 +1 19303000 rs2180119 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:495:0,230:53,277:330 +1 19303125 rs2144348 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:638:107,385:1,265:460 +1 19303154 rs2180118 A T 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,282:0,264:252 +1 19303762 rs2313162 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:569:0,278:50,298:411 +1 19303982 rs34955749 C CA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:577:0,262:65,65:439 +1 19303997 rs1925708 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:577:0,267:63,63:430 +1 19304332 rs1925707 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:144,146:183,179:1144 +1 19304375 rs4912154 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:627:0,276:98,355:486 +1 19304391 rs4912155 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:134,130:176,157:712 +1 19304466 rs4912156 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:19304466_C_T:653:0,308:66,66:463 +1 19304478 rs34510747 G GA 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:19304466_C_T:641:0,302:59,59:448 +1 19304585 rs4912157 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:623:0,301:61,333:442 +1 19304605 rs4912158 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:646:0,306:78,349:526 +1 19304640 rs4912159 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,270:97,338:519 +1 19304756 rs4912160 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:495:0,248:34,258:361 +1 19304953 rs4912161 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:496:0,225:58,274:361 +1 19305312 rs4912022 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:522:0,247:53,289:335 +1 19305507 rs6665113 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:526:125,116:156,131:586 +1 19305638 rs6665211 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:529:0,232:90,302:483 +1 19305716 rs2313161 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:492:0,237:51,259:416 +1 19306344 rs72645669 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:526:120,119:153,137:1098 +1 19307009 rs4912023 C G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:487:0,190:0,0:453 +1 19307163 rs4912024 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:633:0,280:85,350:471 +1 19307404 rs34643338 AG A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:667:0,305:75,75:400 +1 19308155 rs28776192 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,252:51,286:376 +1 19308482 rs9700772 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:534:133,158:0,0:306 +1 19308493 rs58781379 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:515:60,274:0,0:523 +1 19308527 rs56815476 AAG A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:394:102,93:0,0:259 +1 19309223 rs6660338 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:632:0,300:71,342:422 +1 19310610 rs28885182 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:740:0,331:101,421:488 +1 19310886 rs4912025 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:659:1,299:73,371:397 +1 19311288 . TTTATTATTA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:384:0,103,112:0,0,0:259 +1 19311288 . TTTATTATTATTA T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:384:0,103,112:0,0,0:259 +1 19312748 rs28754724 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:731:141,172:202,222:1135 +1 19312907 rs942847 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:648:0,288:75,363:363 +1 19313343 rs28609762 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:19313343_G_A:542:0,246:57,303:328 +1 19313344 rs28522397 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:19313343_G_A:541:0,245:57,302:328 +1 19314888 rs4912027 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:453:0,195:61,256:358 +1 19315129 rs58016220 A AAGAGAG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:207:0,58:0,0:142 +1 19318275 rs6426609 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,268:52,311:358 +1 19318551 rs6683132 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,261:86,325:483 +1 19319245 rs6426610 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:610:0,271:86,339:486 +1 19320779 rs6683004 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:111,149:137,151:1048 +1 19321108 rs1925706 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:129,118:155,165:650 +1 19321251 rs1925705 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:548:1,238:74,311:408 +1 19321462 rs17384449 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:660:0,298:86,370:487 +1 19321936 rs2182198 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:598:139,125:169,160:949 +1 19321980 rs2013107 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:578:148,121:168,148:802 +1 19321981 rs2013108 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,265:30,283:777 +1 19322851 rs1925704 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:132,124:185,161:803 +1 19322989 rs1925703 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:617:0,272:98,358:387 +1 19323015 rs1925702 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:637:132,139:186,182:1269 +1 19324461 rs72648063 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:595:140,130:165,151:781 +1 19325638 rs6666432 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:562:105,335:0,226:511 +1 19326612 rs140884655 A AGAGATGGAG 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:254:0,89:48,48:278 +1 19327220 rs61763707 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:153,135:189,153:898 +1 19327310 rs2147949 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,258:99,338:494 +1 19327635 rs28851182 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,232:57,289:339 +1 19329042 rs4912028 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,274:52,315:378 +1 19329287 rs28393138 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:765:174,162:226,203:1036 +1 19329814 rs28444920 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:719:182,150:215,175:1208 +1 19329929 rs28525466 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:775:178,196:151,171:890 +1 19331465 rs4912029 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:749:172,182:184,208:964 +1 19331493 rs1078894 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:705:0,338:61,365:379 +1 19331835 rs10716907 AT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:653:170,122:35,25:600 +1 19333088 rs28663127 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:516:0,230:82,292:480 +1 19333493 rs7513610 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:567:0,268:68,318:430 +1 19333583 rs7529889 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:568:0,241:97,333:476 +1 19333904 rs28479607 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,254:71,312:403 +1 19334057 rs28561505 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:552:0,241:92,313:481 +1 19334238 rs9426627 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,273:70,323:427 +1 19334273 rs9426628 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:596:0,253:110,349:545 +1 19334299 rs9426629 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:537:0,223:101,322:478 +1 19334421 rs9426708 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:514:0,237:50,278:364 +1 19334739 rs17384645 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:561:0,271:41,298:354 +1 19335223 rs4912030 C T 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:19335223_C_T:445:0,168:0,0:231 +1 19335246 rs4912031 A G 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1|1:19335223_C_T:415:0,169:0,0:205 +1 19335389 rs4912032 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:464:0,210:48,258:324 +1 19335685 rs11408586 C CT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:439:1,184:39,39:350 +1 19335752 rs4243996 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:444:1,200:48,232:377 +1 19335792 rs7531434 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:491:0,221:64,265:421 +1 19335817 rs7522575 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:517:0,226:78,289:434 +1 19336266 rs28658160 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:528:0,244:57,298:348 +1 19336541 rs2038879 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:584:0,257:82,332:437 +1 19336726 rs2038878 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:574:1,260:72,306:459 +1 19336810 rs2038877 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:622:0,256:123,364:557 +1 19337691 rs28611345 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:638:141,149:170,175:746 +1 19337894 rs17384710 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:688:0,326:55,373:375 +1 19338181 rs35658735 TACAC T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1/1:.:571:0,299:0,0:259 +1 19338362 rs28399295 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:649:139,155:174,180:921 +1 19339622 rs6426631 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:752:183,175:200,182:847 +1 19340036 rs6426632 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,251:60,311:368 +1 19340079 rs113047860 CA C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:567:148,149:130,127:511 +1 19340317 rs16862453 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:648:155,138:189,172:1204 +1 19340400 rs61763711 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:124,141:165,184:1326 +1 19340862 rs67537073 TA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:516:92,111:62,47:1026 +1 19341279 rs6684649 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:152,138:199,182:1295 +1 19341313 rs6676777 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:664:159,131:202,169:1031 +1 19341459 rs6677005 C T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19341459_C_T:552:138,113:30,35:886 +1 19341462 rs6677010 C A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19341459_C_T:546:138,118:20,34:737 +1 19341470 rs10700229 A AGGT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:130,107:36,34:997 +1 19341488 rs28507626 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:128,115:38,33:1015 +1 19341553 rs6681972 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:140,126:190,173:1372 +1 19342884 rs6673573 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19342884_G_A:582:0,265:78,334:423 +1 19342885 rs4912033 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19342884_G_A:583:0,266:78,335:423 +1 19342895 rs6683337 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19342884_G_A:589:0,262:78,334:411 +1 19343038 rs11320129 TC T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:578:1,259:63,63:425 +1 19343105 rs2313065 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:19343105_C_T:653:1,287:81,367:398 +1 19343106 rs2313064 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:19343105_C_T:655:1,289:81,369:398 +1 19343233 . G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:714:1,159,154:52,198,154:907 +1 19343233 . G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:714:1,159,154:52,198,154:907 +1 19343296 rs2313062 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:738:1,347:82,401:483 +1 19343845 rs11431282 A AT 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:585:0,272:37,37:336 +1 19343879 rs6691481 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:657:0,311:48,48:392 +1 19344501 rs7531834 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:477:0,210:61,271:358 +1 19344573 rs7545209 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:527:0,250:39,276:326 +1 19344586 rs7545211 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:561:0,258:54,302:350 +1 19344860 rs6690089 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:716:167,154:201,180:938 +1 19344952 rs7547804 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:626:1,281:67,347:357 +1 19344971 rs7534596 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:633:0,273:90,363:322 +1 19345297 rs28683522 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:822:0,392:63,448:396 +1 19345652 rs28700071 A T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:684:2,346:2,346:198 +1 19346672 rs7551578 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:719:0,328:76,387:450 +1 19346775 rs7537191 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:729:0,348:54,388:353 +1 19347277 rs12565162 T C 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,276:0,272:210 +1 19347626 rs111614116 AT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,263:35,35:311 +1 19347700 rs9426632 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:619:0,292:47,339:306 +1 19347825 rs9426712 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:832:0,385:90,456:494 +1 19347951 rs9426713 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:622:0,285:76,353:319 +1 19348073 rs6690248 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:694:0,315:66,377:364 +1 19348605 rs6687825 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:624:0,296:52,342:367 +1 19349246 rs72108166 CAA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:409:1,189:1,189:99 +1 19349591 rs28437983 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:131,112:153,145:539 +1 19349697 rs57870020 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:680:0,308:56,364:346 +1 19350136 rs28710799 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:747:1,326:113,426:516 +1 19350618 rs7534278 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19350618_G_T:849:1,392:105,479:505 +1 19350623 rs6426637 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19350618_G_T:848:0,401:88,470:477 +1 19351421 rs61763714 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:139,122:182,169:1018 +1 19352552 rs4243997 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,258:73,331:386 +1 19353126 rs28590244 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:511:107,108:128,137:675 +1 19353439 rs148730959 T TAAAG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:762:0,352:82,82:418 +1 19353919 rs59222582 GA G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1/1:.:596:0,301:0,0:255 +1 19355177 rs9426715 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:19355177_G_A:525:0,227:79,295:444 +1 19355183 rs9426716 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:19355177_G_A:515:0,230:76,295:422 +1 19355259 rs9426633 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:506:0,214:90,292:450 +1 19355645 rs9426717 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,271:75,338:424 +1 19355665 rs9426634 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,266:64,317:336 +1 19355809 rs28584651 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,274:0,272:264 +1 19356135 rs2147948 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:503:0,219:0,219:238 +1 19356388 rs55724125 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:516:0,235:60,291:343 +1 19356623 rs72648089 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:19356623_G_T:413:0,194:44,225:336 +1 19356651 rs72648090 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1|1:19356623_G_T:387:0,185:38,207:350 +1 19356754 rs34026878 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:335:0,150:0,131:343 +1 19356804 rs34784288 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:338:0,160:0,141:317 +1 19357136 rs6699942 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:288:0,114:45,45:310 +1 19357502 . A AAG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:160:0,0:0,0:154 +1 19357531 . A AAG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/0:.:170:0,0,0:0,0,0:160 +1 19357537 . G GAGAGAA 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:170:0,0,0:0,0,0:160 +1 19357664 rs61763716 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:698:0,334:51,372:385 +1 19358015 rs912845 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:637:0,301:60,345:400 +1 19358220 rs912844 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:634:1,292:76,351:438 +1 19358512 rs9426637 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:518:0,218:93,311:444 +1 19358720 rs66842375 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:595:0,259:91,336:430 +1 19358768 rs28627606 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,254:70,313:397 +1 19358813 rs28606074 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,246:72,308:393 +1 19359013 rs66473373 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:111,123:144,149:930 +1 19359081 rs61763736 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:511:0,220:83,292:458 +1 19359345 rs28489517 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:493:0,216:67,276:394 +1 19359756 rs912843 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:457:0,186:94,269:414 +1 19359796 rs912842 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:393:0,166:64,225:367 +1 19359841 rs912841 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:384:0,157:77,225:429 +1 19359886 rs912840 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:398:75,93:103,118:744 +1 19360146 rs72648097 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:111,132:149,165:1046 +1 19360282 rs4912034 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:538:99,119:144,174:1398 +1 19360295 rs6696055 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:534:114,102:166,148:1316 +1 19360616 rs1077977 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:513:124,151:100,123:546 +1 19361029 rs7522910 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:425:0,195:34,229:294 +1 19361223 rs28605077 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:564:115,125:149,172:1008 +1 19361319 rs6426640 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:581:1,252:86,334:301 +1 19362712 rs28538817 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:474:115,96:144,117:765 +1 19364415 rs4912035 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:654:142,135:200,170:987 +1 19365346 rs1570857 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:652:0,279:120,388:507 +1 19365698 rs6679593 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:694:0,317:83,377:490 +1 19366188 rs61763737 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,295:58,343:391 +1 19366229 rs61763738 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:670:136,157:180,195:859 +1 19367149 rs1570859 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:631:0,266:112,374:527 +1 19367914 . A ATG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:472:5,129,99:0,0,0:160 +1 19367914 . A ATGTG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:472:5,129,99:0,0,0:160 +1 19368426 rs2312885 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:597:0,274:53,321:337 +1 19368571 rs6671432 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:525:1,223:78,296:427 +1 19369527 rs2182197 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:518:0,235:63,288:403 +1 19369933 rs2147947 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:505:0,220:54,271:352 +1 19370867 rs28716459 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:554:116,126:152,164:952 +1 19370907 rs7530518 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,257:67,315:399 +1 19370988 rs17389189 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:605:0,263:105,356:503 +1 19371082 rs61763739 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:19371082_G_T:547:124,123:38,28:804 +1 19371099 rs61763740 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:19371082_G_T:536:119,120:28,31:664 +1 19371327 rs67178903 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:123,105:176,141:853 +1 19372268 rs9426644 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:417:75,97:113,129:789 +1 19372361 rs72648101 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:478:108,97:137,135:965 +1 19372604 rs5005690 C G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:19372604_C_G:355:56,59:0,0:1071 +1 19372605 rs3060746 T TGC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:19372604_C_G:355:57,58:0,0:1071 +1 19374794 rs7550224 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:436:0,173:60,233:367 +1 19374881 . A AAAGGAAGG 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:315:0,76,94:0,0,0:142 +1 19374881 . AAAGGAAGGAAGGAAGG A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:315:0,76,94:0,0,0:142 +1 19375679 rs72649505 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:701:153,161:196,188:764 +1 19375841 rs6683868 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:643:134,146:176,187:1172 +1 19376017 rs4912036 A G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:741:0,331:97,422:329 +1 19378818 rs113575670 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:504:105,115:145,137:484 +1 19379476 rs61763745 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:362:68,69:101,85:549 +1 19379632 rs12759039 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:407:0,148:66,214:366 +1 19380992 rs7549904 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:506:0,222:58,280:342 +1 19381583 rs55804150 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:486:99,96:41,56:1099 +1 19382396 rs11293191 CA C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:463:94,107:38,33:854 +1 19382691 rs10799662 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:644:0,262:0,252:546 +1 19383403 rs12757627 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:127,115:163,141:688 +1 19383676 rs12121145 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:509:138,127:0,0:538 +1 19383877 rs4911972 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:138,137:162,169:1210 +1 19383955 rs4912037 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:475:95,112:132,133:762 +1 19384838 rs6696450 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19384838_G_C:402:0,186:0,184:271 +1 19384846 rs35237031 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19384838_G_C:390:0,182:0,182:241 +1 19385621 rs34692151 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:511:0,228:64,292:323 +1 19385727 rs61763749 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:513:119,117:141,133:935 +1 19385992 rs57990456 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:439:102,99:113,120:602 +1 19386358 rs942186 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:437:98,110:112,118:504 +1 19386436 rs942185 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:521:0,250:54,278:410 +1 19389307 rs12120853 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:134,141:171,160:655 +1 19389629 rs12116583 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:537:121,121:152,146:748 +1 19390099 rs4912040 T C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:538:114,120:140,141:582 +1 19390425 rs34232829 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:125,122:149,163:564 +1 19390632 rs10799663 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:519:0,236:54,287:345 +1 19391132 rs12118553 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:608:137,125:55,47:1174 +1 19391177 rs10916867 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:603:131,137:43,39:956 +1 19391564 rs4339892 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,223:60,281:386 +1 19391843 rs12061502 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:567:126,127:158,153:621 +1 19392606 rs12754851 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:536:2,241:51,284:310 +1 19392706 rs4912041 T G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:498:0,221:64,279:242 +1 19393033 rs10753508 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:602:0,256:102,352:458 +1 19393150 rs7529294 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:129,150:143,168:597 +1 19393202 rs12120602 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:625:154,118:189,160:1191 +1 19393387 rs10799666 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:491:0,214:76,282:433 +1 19393531 rs34114464 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:115,134:158,161:642 +1 19393638 rs67963944 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:114,106:146,146:719 +1 19394724 rs12727433 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:577:135,111:179,159:1062 +1 19394737 rs12727435 C G 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidPE50x50bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidPE50x50GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:524:0,232:64,294:372 +1 19394852 rs34503993 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:466:121,70:32,33:725 +1 19395246 rs12125736 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:126,129:149,143:377 +1 19395445 rs35589756 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:512:122,116:142,126:564 +1 19395849 rs112694794 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:122,135:146,162:642 +1 19396736 rs12738339 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:628:136,138:172,181:1021 +1 19397229 rs72649592 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:650:144,149:173,180:881 +1 19397576 rs4912042 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:537:0,235:94,314:488 +1 19398516 rs35123213 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:490:107,103:145,139:891 +1 19398552 rs4912043 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:550:0,255:68,312:337 +1 19398951 rs3813983 T C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:375:1,180:1,180:99 +1 19399161 rs942184 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:663:0,289:102,382:481 +1 19399398 rs745987 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:526:1,253:34,278:290 +1 19399623 rs942183 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,284:51,306:409 +1 19399891 rs10916899 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:123,137:148,162:773 +1 19400691 rs3748761 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:578:145,118:176,142:914 +1 19401405 rs2281748 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Ion;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:90,120:126,156:826 +1 19401728 rs1886026 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:604:1,287:52,323:380 +1 19401814 rs1886025 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:534:0,243:60,303:333 +1 19402390 rs10158468 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:668:0,284:114,386:424 +1 19403867 rs2181598 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:493:0,207:95,294:361 +1 19404071 rs2146867 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:613:134,375:0,237:512 +1 19404176 rs2181597 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:553:110,121:143,173:837 +1 19405237 rs2146866 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,297:90,358:511 +1 19405284 rs2146865 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:637:0,301:71,343:451 +1 19406176 rs72649602 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:601:132,134:168,169:1080 +1 19408294 rs67232976 G GC 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:109,118:45,42:1058 +1 19408380 rs12164540 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:118,110:156,160:1288 +1 19410754 rs12126114 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:131,128:148,150:864 +1 19411129 rs1043905 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:599:0,221:85,300:483 +1 19411410 rs2313506 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:603:137,143:156,162:827 +1 19411444 rs2313507 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:610:1,278:71,333:335 +1 19411500 rs2313508 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:658:134,153:174,193:1174 +1 19412464 rs2274009 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:490:0,219:62,273:381 +1 19413261 rs12584 T A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:767:0,246:82,316:558 +1 19413420 rs2274008 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:624:0,281:82,352:432 +1 19413698 rs61766779 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:665:158,154:180,176:735 +1 19413926 rs12075030 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:694:1,317:85,387:458 +1 19414814 rs732725 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:573:0,267:56,314:381 +1 19415304 rs1043899 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,231:77,304:443 +1 19417370 rs61766781 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:122,137:151,177:798 +1 19417590 rs34082937 CA C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:528:37,270:2,235:142 +1 19420392 rs1106839 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:677:0,315:78,371:465 +1 19421846 rs2274007 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:19421846_G_T:495:130,104:143,125:625 +1 19421856 rs2274006 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19421846_G_T:484:0,228:41,264:386 +1 19423407 rs72651014 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:646:143,138:182,172:930 +1 19423486 rs36041876 CT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:479:35,246:1,212:165 +1 19423565 rs2296105 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:622:0,269:96,350:502 +1 19424477 rs6702423 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:772:0,343:116,436:572 +1 19424960 rs6695771 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:735:0,336:83,408:438 +1 19425463 rs6426673 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:641:126,157:155,204:1351 +1 19425559 rs942181 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,273:90,350:464 +1 19426199 rs2236377 G A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:739:0,310:114,400:586 +1 19428929 rs4912046 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:646:0,282:99,374:463 +1 19430008 rs7515874 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:568:0,254:58,312:342 +1 19431861 rs942180 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:621:0,281:76,343:457 +1 19432622 rs4912047 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:684:175,142:200,167:1084 +1 19433449 rs6426677 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:643:1,224:38,248:403 +1 19433612 rs6674453 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:620:142,125:206,150:1104 +1 19433749 rs17390041 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:560:132,121:164,142:962 +1 19435241 rs7534950 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:738:150,173:199,214:1444 +1 19435432 rs4912048 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:613:0,291:76,341:483 +1 19435918 rs17390090 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:741:182,157:218,188:1213 +1 19437185 rs10916957 G T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:719:136,153:173,186:1204 +1 19440107 rs9661719 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:471:0,226:0,217:276 +1 19440914 rs61766783 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:138,132:154,152:812 +1 19441212 rs2274003 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:632:0,291:76,356:410 +1 19441594 rs56030256 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:537:117,103:165,151:1494 +1 19441689 rs139502260 ACATG A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:425:112,93:0,0:259 +1 19441693 . G GCA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:420:104,96:0,0:259 +1 19442508 rs4911974 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:781:0,369:84,428:504 +1 19444552 rs17392444 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:727:186,160:204,175:928 +1 19446388 rs2296104 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:677:0,298:105,379:491 +1 19446587 rs6693149 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:665:141,158:172,191:1140 +1 19447498 rs6426678 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:772:0,357:82,428:431 +1 19447819 rs35802543 T C 50 PASS platforms=4;platformnames=CG,Illumina,Ion,10X;datasets=4;datasetnames=CGnormal,HiSeqPE300x,IonExome,10XChromium;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:19447819_T_C:492:82,62:42,31:729 +1 19447843 rs1044010 C G 50 PASS platforms=4;platformnames=Illumina,CG,Ion,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=10,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19447819_T_C:538:0,179:74,248:255 +1 19448326 rs6681662 C T 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:648:0,256:62,310:415 +1 19448608 rs7535738 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:490:0,224:62,274:405 +1 19448814 rs942179 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:697:0,303:108,399:529 +1 19450334 rs6696220 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:726:168,168:200,191:1159 +1 19450605 rs6688770 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:684:155,152:186,189:1084 +1 19450938 rs6681943 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:137,132:157,149:935 +1 19456406 rs6660578 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:716:0,327:96,402:502 +1 19456427 rs6668423 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:687:0,301:109,401:535 +1 19457257 rs7547104 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:613:1,279:77,337:405 +1 19457666 rs7538687 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:431:1,178:34,207:278 +1 19458541 rs4319363 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:833:191,177:250,215:910 +1 19458669 rs12120532 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:721:166,135:166,135:675 +1 19459831 rs7518294 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:824:197,177:241,207:1141 +1 19460635 rs4066013 A T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,206:97,97:511 +1 19461601 rs6426714 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:621:0,284:77,353:440 +1 19462146 rs7525201 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:778:0,369:64,426:358 +1 19463470 rs58933407 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:116,121:34,28:613 +1 19463611 rs6426715 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:585:0,251:90,337:455 +1 19463720 rs12120450 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:595:124,129:159,163:889 +1 19464773 rs2274001 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:771:0,361:98,423:574 +1 19466708 rs11291469 AT A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:590:1,287:1,287:99 +1 19470662 rs4912050 T C 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:882:167,161:210,209:1424 +1 19470749 rs2296109 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:705:0,337:67,375:424 +1 19471997 rs67987332 ACT A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:600:166,188:0,0:1143 +1 19472002 . G GAC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:411:5,79,154:0,0,0:247 +1 19472002 . GACACACACACACACACACAC G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:411:5,79,154:0,0,0:247 +1 19474216 rs60506187 GCTCAATATCC G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:136,118:65,35:1030 +1 19474975 rs2296108 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:656:134,150:175,199:896 +1 19475792 rs12565575 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:725:165,162:212,192:1231 +1 19476581 rs942182 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:653:145,172:152,187:828 +1 19479204 rs10917035 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:794:186,184:205,219:955 +1 19480829 rs6691238 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:711:156,164:191,204:1293 +1 19480939 rs2282331 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:637:133,143:173,187:1243 +1 19481184 rs12131098 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:652:149,141:182,177:1025 +1 19482448 rs10799709 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:745:172,170:46,37:1018 +1 19483209 rs10799710 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:790:184,175:216,215:1244 +1 19483593 rs10753518 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:844:226,181:198,174:529 +1 19486136 rs6699068 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:516:131,148:92,97:770 +1 19486839 rs946419 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:657:0,258:0,236:486 +1 19487656 rs3748759 T C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:821:145,140:175,163:1010 +1 19488493 rs3748758 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:614:124,122:49,36:1017 +1 19488839 rs1999967 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:690:0,300:117,406:446 +1 19489275 rs10799715 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:749:173,167:203,201:1213 +1 19491514 rs12133185 G C 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:734:116,110:157,148:1294 +1 19491857 rs3748757 T C 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:683:0,254:89,317:570 +1 19492707 rs6663221 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:670:157,158:177,180:1023 +1 19492876 rs4325153 C A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:688:0,332:0,0:376 +1 19492913 rs11299380 TA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:645:152,141:0,0:446 +1 19493394 rs11379504 T TA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:466:128,82:16,27:466 +1 19495253 rs60337059 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:539:111,115:155,147:836 +1 19495396 rs142490518 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19495396_C_T:562:123,108:159,130:624 +1 19495397 rs35462475 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19495396_C_T:562:123,108:159,130:624 +1 19498092 rs10917059 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:549:1,249:53,301:317 +1 19498296 rs10799717 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:646:142,141:170,181:604 +1 19498987 rs61766803 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:664:146,138:186,183:970 +1 19499120 rs10917061 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:740:0,334:95,411:491 +1 19499560 rs16862578 T C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:742:140,161:169,204:1054 +1 19499835 rs951908 G C 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:865:0,299:125,393:560 +1 19499873 rs952789 G T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:835:149,154:195,195:1425 +1 19499954 rs952790 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:893:141,152:177,195:1309 +1 19500328 rs870482 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:704:158,146:209,194:1158 +1 19500729 rs6694521 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:813:0,363:119,465:563 +1 19504306 rs12138892 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:764:176,165:226,199:1353 +1 19504936 rs56220854 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:718:158,171:183,205:1074 +1 19505119 rs12136947 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:733:172,166:202,193:845 +1 19506031 rs12093186 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:808:175,188:217,231:1158 +1 19506690 . A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:463:99,110:17,21:523 +1 19506738 rs1970369 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:565:128,116:30,41:765 +1 19506744 rs1970370 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:560:0,245:71,316:580 +1 19507751 rs66921123 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:139,110:183,139:999 +1 19507999 rs7519084 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,276:88,321:492 +1 19509523 rs7522916 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:826:1,392:78,440:487 +1 19510394 rs3762396 A G 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:833:0,324:95,388:585 +1 19511064 rs7536137 T C 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=5;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:707:92,427:0,299:581 +1 19513570 rs72158799 TTA T 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:486:0,252:0,252:99 +1 19515061 rs4912051 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:747:175,153:211,207:960 +1 19518659 rs11588032 G A 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:870:150,168:192,209:1428 +1 19519546 rs4911978 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:617:0,278:68,334:415 +1 19519782 rs10799734 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:732:151,174:180,215:1128 +1 19521274 rs55761028 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:150,133:196,168:1178 +1 19521434 rs12743639 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:700:201,174:168,152:553 +1 19521760 rs138701610 A AAATAAT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:444:0,227:0,0:242 +1 19521793 rs12116877 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:691:187,187:0,0:651 +1 19523168 rs61766806 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:760:168,188:190,218:1108 +1 19523961 rs4912054 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:108,146:167,191:899 +1 19525585 rs841374 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:824:0,366:117,467:565 +1 19526363 rs12122656 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:750:159,177:198,216:1377 +1 19526975 rs12143407 G A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:151,124:151,124:198 +1 19528847 rs12121004 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:672:150,154:190,180:954 +1 19529088 rs61766807 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:108,129:132,157:629 +1 19529204 rs12062540 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:130,122:177,158:1060 +1 19529749 rs9426798 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:687:159,153:174,185:411 +1 19530741 rs7518238 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:638:0,296:0,296:263 +1 19531021 rs142907721 T TA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:150,134:0,0:259 +1 19531534 rs12758524 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:131,141:161,176:1192 +1 19533303 rs9426682 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:735:165,173:194,207:1268 +1 19534054 rs12723349 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:711:151,153:201,198:1138 +1 19534315 rs12723737 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:684:165,150:165,150:592 +1 19534942 rs71736683 CAG C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:500:176,109:0,0:1699 +1 19535134 rs10917189 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:19535134_C_T:743:0,333:96,417:501 +1 19535144 rs10917190 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1|1:19535134_C_T:723:0,324:92,402:477 +1 19537447 rs10158374 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:162,149:193,174:953 +1 19537755 rs10158092 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:749:160,155:153,145:1545 +1 19540663 rs4911979 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:752:175,162:54,42:1297 +1 19540673 rs148670822 T TA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:705:139,159:44,45:1014 +1 19541394 rs864559 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:494:81,109:108,129:612 +1 19542181 rs55741953 T TTTTA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:522:121,109:34,28:609 +1 19545053 rs12130051 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:782:191,176:215,207:1184 +1 19545140 rs67823069 CAA C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:134,123:48,52:1322 +1 19546377 rs140097250 G GC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:625:126,142:42,44:927 +1 19548418 rs1738020 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:126,153:153,184:646 +1 19549759 rs710870 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:117,129:142,154:914 +1 19550459 rs710874 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:552:103,338:0,219:499 +1 19551655 rs710875 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:678:0,307:100,100:518 +1 19551929 rs6698512 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:518:116,115:116,115:364 +1 19553042 rs72651417 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:719:179,210:155,175:394 +1 19554099 rs7515397 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:499:0,230:47,277:321 +1 19556408 rs3762395 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:673:144,141:193,196:1555 +1 19557281 rs12128595 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:567:119,116:171,158:1224 +1 19557713 rs2275403 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:503:0,231:59,282:360 +1 19558018 rs55748756 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:645:145,138:184,174:961 +1 19558096 rs60543370 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:640:130,145:181,187:945 +1 19558241 rs57273965 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:136,129:161,152:589 +1 19558584 rs59953698 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:132,136:167,152:424 +1 19558628 rs7511790 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:119,137:169,180:948 +1 19559729 rs16862625 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:621:135,125:184,168:1149 +1 19559842 rs16862629 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:631:124,145:71,44:1115 +1 19559963 rs10917240 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:588:126,136:163,168:1134 +1 19560067 rs10917241 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:129,135:177,168:1188 +1 19560427 rs947533 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:661:132,151:180,194:1193 +1 19562024 rs11809076 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:504:102,101:146,142:897 +1 19562149 rs2027306 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:127,121:149,144:581 +1 19563047 rs12134880 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:514:110,120:123,143:444 +1 19563900 rs16862632 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:130,142:158,166:949 +1 19564037 rs710879 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:535:127,112:157,142:1160 +1 19564202 rs710882 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:680:164,146:185,184:916 +1 19564846 rs10489533 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:690:158,146:192,194:1363 +1 19565175 rs709681 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:594:135,111:114,101:1587 +1 19565338 rs709682 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:19565338_C_T:780:151,153:54,48:1663 +1 19565344 rs709683 C G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0|1:19565338_C_T:766:144,154:44,47:1534 +1 19565998 rs16862639 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:118,104:139,146:789 +1 19566627 rs710869 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:620:137,139:177,165:637 +1 19566881 rs12084825 C T 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:783:138,139:169,176:1156 +1 19568722 rs710866 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:670:131,155:180,201:1054 +1 19568972 rs710865 A G 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:725:147,117:191,147:1017 +1 19569620 rs12141064 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:591:124,135:159,170:791 +1 19569783 rs12139436 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:766:157,157:157,157:1564 +1 19570426 rs2294944 C G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:137,122:160,148:853 +1 19570939 rs10917269 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:169,145:148,129:431 +1 19571146 rs10917270 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:609:137,130:174,158:873 +1 19571849 rs12095284 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:561:130,113:159,138:667 +1 19571876 rs12094043 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:594:147,128:162,143:429 +1 19572232 rs61764877 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:449:105,90:105,90:331 +1 19572813 rs55689911 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:664:162,143:191,163:547 +1 19573055 rs55717136 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:147,120:180,144:601 +1 19573223 rs12095615 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:651:157,145:180,160:413 +1 19574853 rs61764880 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:646:147,145:176,171:737 +1 19574989 rs61764881 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:749:172,169:193,205:601 +1 19575164 rs61764882 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:559:130,103:14,18:466 +1 19575253 rs61764883 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:681:157,152:188,175:641 +1 19576035 rs10917275 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:856:219,181:244,210:1061 +1 19578576 rs17551584 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:492:99,104:42,42:1003 +1 19578872 rs55852916 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:461:110,105:130,116:388 +1 19579312 rs60915273 GT G 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:533:125,107:44,23:285 +1 19579969 rs10917277 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19579969_A_G:526:115,107:159,145:1254 +1 19579994 rs61764885 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19579969_A_G:548:118,111:176,151:1319 +1 19580826 rs947530 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:543:106,132:133,163:905 +1 19580857 rs947531 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:526:97,125:143,156:670 +1 19581226 rs735026 G A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=6;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=7;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:767:133,151:156,174:1096 +1 19581442 rs3068118 G GAA 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:499:122,138:107,118:406 +1 19581467 rs1774081 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:123,124:162,172:1171 +1 19581688 rs761307 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,230:107,333:361 +1 19581715 rs761306 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:574:121,125:164,167:984 +1 19581897 rs148293422 TAA T 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:477:107,131:76,110:351 +1 19581934 rs947532 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:630:87,142:87,142:1433 +1 19582563 rs1557133 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:115,126:148,160:1014 +1 19582750 rs61764888 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:113,126:147,168:1001 +1 19583400 rs1774075 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:550:0,239:85,320:392 +1 19583684 rs1774074 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:514:126,98:26,29:726 +1 19583725 rs1738017 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:482:120,88:26,23:541 +1 19584004 rs1042380 G A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidPE50x50bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable;filt=CS_IonExomeTVC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:718:133,138:162,169:872 +1 19584578 rs12121472 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:720:147,180:183,218:851 +1 19585207 rs2294939 G A 50 PASS platforms=4;platformnames=Illumina,CG,Ion,10X;datasets=4;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:779:123,138:172,166:767 +1 19585545 rs761305 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:123,106:157,129:644 +1 19585758 rs112771552 CA C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:439:110,115:89,87:452 +1 19585903 rs9426684 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:650:136,152:173,185:1039 +1 19586015 rs9426686 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:127,133:152,166:618 +1 19586294 rs1063984 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:704:171,163:158,156:533 +1 19586967 rs4912058 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:515:103,126:133,149:952 +1 19587164 rs4912059 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:440:101,96:129,114:454 +1 19587230 rs11589816 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:363:64,70:92,109:734 +1 19588061 rs2103718 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:512:101,102:101,102:560 +1 19588503 rs61764913 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:141,130:186,165:1187 +1 19588562 rs761304 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:573:126,128:164,158:765 +1 19588997 rs61764914 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:610:132,141:160,170:871 +1 19589204 rs1546909 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:442:89,92:116,116:636 +1 19590043 rs2179660 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:705:165,154:196,188:971 +1 19601875 rs58772762 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:711:160,154:194,192:726 +1 19602979 rs4912064 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:735:172,167:197,187:795 +1 19616268 rs61253640 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:697:141,177:173,210:1412 +1 19617607 rs142519756 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:498:128,111:0,0:527 +1 19617855 rs12031823 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:674:1,322:61,361:427 +1 19618601 rs9729157 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:118,135:138,163:968 +1 19619369 rs72651443 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:691:153,157:195,193:897 +1 19622015 rs61764922 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:122,120:164,162:1025 +1 19622270 rs12133034 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:626:131,146:181,171:975 +1 19622375 rs4912066 A T 50 PASS platforms=3;platformnames=Illumina,10X,Solid;datasets=3;datasetnames=HiSeqPE300x,10XChromium,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:464:0,245:0,229:246 +1 19623091 rs55764681 AG A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:97,120:55,39:979 +1 19623954 rs57454698 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:574:141,116:171,136:597 +1 19626028 rs4912067 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:756:181,186:192,195:734 +1 19626376 rs1738021 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,253:55,308:346 +1 19627297 rs56070474 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:704:169,165:187,184:857 +1 19627438 rs1621294 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:821:0,379:84,444:483 +1 19627876 rs12407355 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:762:165,174:207,215:1143 +1 19628386 rs2143587 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,268:82,346:418 +1 19628430 rs12129480 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:641:135,151:167,186:866 +1 19630293 rs72651448 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:642:139,161:163,185:901 +1 19631540 rs7549207 G T 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:603:169,157:129,124:775 +1 19632094 rs3790778 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:510:116,94:156,141:944 +1 19632332 rs3828102 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:680:153,167:180,186:1126 +1 19632757 rs2231204 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:573:121,127:145,171:565 +1 19633106 rs3835240 A AT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:380:3,183:0,0:160 +1 19636169 rs3762394 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:143,138:177,168:1006 +1 19636991 rs2002846 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:499:99,120:99,120:715 +1 19637058 rs2002847 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:579:103,131:103,131:1162 +1 19637127 rs2016790 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:647:130,154:166,189:871 +1 19647134 rs187347986 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:570:107,123:153,155:871 +1 19647144 rs371545601 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:19647144_T_C:545:123,102:157,139:979 +1 19647147 . G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:19647144_T_C:534:122,103:154,131:927 +1 19647207 rs214311 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:116,93:147,140:699 +1 19647366 rs214312 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:19647366_T_C:589:127,126:37,45:970 +1 19647379 rs55720850 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:19647366_T_C:595:134,133:34,29:860 +1 19648143 rs477812 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19648143_A_C:586:133,125:171,160:1006 +1 19648147 rs599029 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19648143_A_C:590:133,130:175,160:876 +1 19648390 rs214313 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:639:134,143:177,183:1425 +1 19652132 rs214315 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:368:3,134:3,134:266 +1 19657159 rs56239997 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:424:92,77:126,114:944 +1 19671766 rs72651465 T A 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:725:142,121:199,180:1549 +1 19672539 rs67559618 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:120,119:155,157:1022 +1 19674320 rs16862684 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:621:132,141:164,188:1252 +1 19675253 rs34640043 AG A 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:438:108,91:15,12:286 +1 19677642 rs214334 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:145,122:168,155:695 +1 19678473 rs214336 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:567:105,147:140,183:877 +1 19679873 rs214338 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:468:0,206:59,265:331 +1 19679927 rs3831849 A ACGC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:19679927_A_ACGC:447:103,84:27,31:834 +1 19679934 rs2254648 G T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0|1:19679927_A_ACGC:471:106,90:30,37:852 +1 19680145 rs127037 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:507:124,107:148,129:866 +1 19680558 rs214341 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:696:148,134:137,129:1568 +1 19681458 rs214343 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:543:128,102:173,137:1245 +1 19681647 rs214344 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:617:141,119:195,157:1066 +1 19682169 rs6683394 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:669:156,143:48,40:1138 +1 19685458 rs214300 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,282:77,341:338 +1 19689856 rs41423949 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:644:132,125:182,170:986 +1 19691009 rs79621838 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:596:140,127:176,161:926 +1 19692779 . TATATATAT A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:205:0,0:0,0:160 +1 19693435 rs72651477 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:152,114:176,133:663 +1 19697378 rs937608 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,275:83,339:487 +1 19697915 rs10753558 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:140,117:167,151:650 +1 19698026 rs10753559 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:555:114,116:165,157:1235 +1 19698546 rs3790767 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:125,114:164,149:811 +1 19698824 rs3790766 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,260:78,321:417 +1 19698957 rs4911986 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:544:0,246:72,305:406 +1 19699786 rs867355 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:536:122,120:160,129:691 +1 19700458 rs6426795 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:635:1,280:89,357:460 +1 19701015 rs3748753 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,265:54,308:362 +1 19701656 rs7519565 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:724:140,161:199,223:1475 +1 19702007 rs7519264 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:501:127,94:157,121:783 +1 19702078 rs3790762 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:570:120,136:151,165:729 +1 19702183 rs72651486 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:653:152,127:197,179:1495 +1 19703838 rs6426796 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:740:0,332:105,420:526 +1 19707951 rs10799805 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:422:86,107:106,123:446 +1 19708070 rs4264021 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:471:98,105:120,133:634 +1 19708363 rs12088915 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:550:120,120:156,148:1014 +1 19708577 rs10753560 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:502:0,239:46,257:390 +1 19708618 rs10917436 T A 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:515:112,108:151,132:674 +1 19709918 rs12730973 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:400:90,100:0,0:820 +1 19710373 rs10917437 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:487:118,107:133,124:803 +1 19710491 rs1039396 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:596:0,288:78,317:561 +1 19711437 rs6426797 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:552:0,240:87,315:479 +1 19713004 rs1472566 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:685:153,155:195,183:956 +1 19713378 rs1472567 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:587:136,127:167,159:976 +1 19713575 rs144183690 G GTAGGCCCTTTACA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:128,142:37,52:1076 +1 19713876 rs12049019 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:515:106,114:147,148:743 +1 19713910 rs6672756 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:568:127,117:163,161:1333 +1 19715311 rs884630 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:617:147,139:167,165:1019 +1 19715410 rs884629 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:668:146,149:184,191:1144 +1 19715602 rs10917440 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:139,126:177,158:1328 +1 19715919 rs10737476 G A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:672:133,136:0,0:1505 +1 19715923 rs74921283 GT G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:629:126,128:0,0:630 +1 19715959 rs10917441 T C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:635:143,134:0,0:790 +1 19716070 rs10733035 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:545:120,104:173,148:1021 +1 19717215 rs4912083 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:179,174:121,125:1058 +1 19717565 rs11388908 C CT 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:614:153,174:126,139:465 +1 19717793 rs55977497 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:630:144,139:170,180:943 +1 19718673 rs58836867 TCTCAAGGTAAAAAAAAAAAA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:399:63,79:0,0:1089 +1 19718824 rs7667 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:528:109,116:144,156:1013 +1 19719697 rs12094018 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:123,136:151,184:767 +1 19720092 rs7529705 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:618:151,136:171,161:757 +1 19720151 rs4595382 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:650:151,135:193,178:944 +1 19720619 rs4488059 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:636:147,141:170,175:549 +1 19721041 rs10799806 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:142,132:172,152:550 +1 19721167 rs10799807 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:135,126:168,143:468 +1 19721503 rs4911987 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:680:163,155:32,29:898 +1 19721508 rs55886853 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:675:158,154:30,35:898 +1 19721548 rs4912084 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:617:140,140:42,38:1003 +1 19722510 rs10799808 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:505:95,106:140,148:988 +1 19724100 rs17394376 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:656:135,152:167,201:1147 +1 19724323 rs34032610 A AG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:566:137,108:41,29:668 +1 19724874 rs72651496 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:516:113,120:134,147:600 +1 19724921 rs7516423 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,250:99,329:522 +1 19724940 rs7554287 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:583:2,252:117,343:568 +1 19724972 rs7516504 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:566:135,108:163,154:1326 +1 19725033 rs7513800 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:569:136,113:36,38:1012 +1 19725615 rs58441212 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:135,121:157,153:632 +1 19726082 rs1566533 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:551:0,247:78,310:435 +1 19726245 rs56224045 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:721:152,151:136,146:1571 +1 19726907 rs12022399 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:638:140,138:192,173:1012 +1 19727062 rs10799809 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:721:151,160:203,208:1633 +1 19727145 rs6698682 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:162,132:199,167:1094 +1 19727801 rs1566532 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:717:162,136:219,197:1325 +1 19727896 rs1566531 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:667:158,129:207,168:957 +1 19729087 rs4912085 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:124,118:165,145:980 +1 19730346 rs7515937 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:510:112,117:112,117:405 +1 19730865 rs12726451 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:525:93,113:52,52:1218 +1 19731281 rs12561981 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:556:122,130:150,155:913 +1 19732915 rs72653903 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:587:143,116:36,45:965 +1 19733076 rs72653905 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:119,129:155,169:1118 +1 19738518 rs12026907 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:121,154:150,181:948 +1 19739156 rs6426800 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:671:192,209:129,139:1357 +1 19740069 rs6676572 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:629:136,149:167,180:778 +1 19740174 rs12030205 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:720:144,155:138,153:1521 +1 19740823 rs6662273 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:728:158,164:186,210:1254 +1 19742140 rs17398869 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:712:174,154:213,177:904 +1 19743877 rs11804413 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:614:139,136:165,169:790 +1 19745800 rs4912088 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:583:130,136:157,167:857 +1 19746332 rs41264091 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:640:121,140:180,203:1373 +1 19746527 rs3790760 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:504:105,123:135,142:876 +1 19746599 rs3790759 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:578:123,131:163,166:1236 +1 19747375 rs1566534 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:614:0,271:95,347:508 +1 19747496 rs3829833 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:572:129,130:158,158:1021 +1 19747735 rs3813984 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:732:155,179:191,214:1231 +1 19748860 rs4911991 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:620:0,284:77,343:405 +1 19749103 rs4912089 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:513:111,83:52,48:1050 +1 19749223 rs142380506 A AAACAACAAC 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:358:111,66:0,0:259 +1 19749676 rs6686979 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19749676_A_G:602:122,150:155,180:1075 +1 19749679 rs6689918 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19749676_A_G:607:123,152:157,182:1192 +1 19749850 rs17398986 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:604:138,131:166,167:1200 +1 19749894 rs12033437 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:686:150,159:176,194:949 +1 19750580 rs10158705 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:632:170,118:202,135:485 +1 19750871 rs12034426 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:574:125,114:182,152:1191 +1 19750909 rs12031691 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:550:136,124:151,138:780 +1 19751333 rs12036866 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:560:130,120:161,150:643 +1 19751583 rs4912091 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:727:162,165:203,205:1192 +1 19753127 rs12566399 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:125,122:168,161:932 +1 19754134 rs11385098 T TA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:621:125,136:39,56:988 +1 19754466 rs4912092 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:762:186,163:220,191:960 +1 19754727 rs2133971 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:582:110,105:162,152:1122 +1 19755030 rs1472565 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:768:230,206:173,153:1006 +1 19755204 rs6661421 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:578:122,113:180,164:1312 +1 19755256 rs6692727 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:137,112:146,140:852 +1 19755388 rs6702374 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:569:110,114:166,182:1418 +1 19757172 rs1500969 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:536:0,226:95,311:497 +1 19757506 rs12405176 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:549:108,130:147,164:1178 +1 19757737 rs2088829 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:127,123:158,143:1107 +1 19758400 rs7538548 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:496:128,88:31,24:684 +1 19759413 rs6426801 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:699:1,321:85,382:485 +1 19760671 rs4244003 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,254:79,312:468 +1 19761044 rs11483583 C CT 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:509:132,133:118,109:218 +1 19761446 . AAT G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:203:0,0:0,0:160 +1 19761554 rs72653926 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:664:143,134:138,130:496 +1 19761593 rs4911994 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:716:157,154:146,149:386 +1 19762906 rs72653929 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19762906_G_A:669:155,150:193,187:1137 +1 19762910 rs72653930 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0|1:19762906_G_A:656:153,143:188,179:1100 +1 19763085 rs72653931 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:833:190,191:227,229:1274 +1 19764040 rs12042004 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:641:140,154:165,184:996 +1 19764518 rs10158489 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:558:0,245:90,317:479 +1 19764832 rs1472569 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:582:0,266:89,325:535 +1 19765518 rs12045440 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:716:158,165:199,191:1061 +1 19766248 rs12041311 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:125,121:165,157:1029 +1 19766432 rs1472568 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:606:135,139:148,176:477 +1 19767402 rs10458385 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,235:83,318:328 +1 19767814 rs12407089 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:585:128,136:160,161:837 +1 19767848 rs1967190 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:144,127:180,151:937 +1 19768172 rs370513735 GA G 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:384:94,92:79,86:131 +1 19768426 rs150708563 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:483:81,101:111,138:765 +1 19768571 rs12042240 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:481:88,93:123,123:890 +1 19768637 rs67133294 CTGT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:563:0,256:54,54:393 +1 19768839 rs72653935 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:556:139,128:124,120:446 +1 19768845 rs7519931 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:540:1,259:1,236:431 +1 19768905 rs7524565 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:584:1,275:58,316:386 +1 19769100 rs141357551 ACACT A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:577:147,112:44,26:503 +1 19769243 rs10458381 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:601:126,140:52,42:1097 +1 19769331 rs72653940 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:552:106,140:133,177:854 +1 19769675 rs10799811 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:570:0,247:0,247:359 +1 19769943 rs17399520 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:723:156,162:206,203:1039 +1 19770102 rs10640752 A ATTG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:503:123,124:0,0:277 +1 19770161 rs10737477 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:646:138,143:179,179:989 +1 19770223 rs7514590 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:557:112,126:150,165:988 +1 19771038 rs7526496 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:647:147,143:181,171:1108 +1 19771438 rs12089835 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:99,96:148,143:1112 +1 19771821 rs72653942 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:656:139,131:195,183:1206 +1 19771925 rs12091047 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:661:139,139:184,184:1098 +1 19772134 rs904965 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:695:0,304:120,399:606 +1 19772363 rs72653943 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:661:132,150:172,208:1054 +1 19772598 rs72653944 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:542:106,126:137,172:912 +1 19772847 rs10492998 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:814:171,182:161,171:1438 +1 19773119 rs5772845 C CA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:629:0,291:53,53:300 +1 19773433 rs1546263 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:729:158,168:194,207:1308 +1 19774133 rs2088823 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:532:118,117:154,145:917 +1 19774373 rs7527542 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:668:0,296:111,385:545 +1 19775566 rs1546264 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:542:121,103:42,49:961 +1 19775811 rs10753562 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:117,125:148,153:823 +1 19777150 rs34640740 AC A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:703:165,151:38,34:958 +1 19779053 rs11589517 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:484:123,92:135,121:610 +1 19779860 rs10917453 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:533:130,108:163,129:606 +1 19780411 rs71008170 T TGAA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:130,127:40,48:1142 +1 19780509 rs3913439 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19780509_C_T:606:119,142:156,196:1077 +1 19780510 rs3850532 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:19780509_C_T:609:147,120:197,153:1176 +1 19780968 rs2314345 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:146,157:181,180:1064 +1 19781088 rs3861822 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:129,142:156,180:828 +1 19781545 rs1875325 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:97,118:138,153:973 +1 19781949 rs12049394 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:531:126,109:145,151:698 +1 19782569 rs11591195 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:119,104:174,166:1339 +1 19783646 rs1340422 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:572:0,250:101,331:521 +1 19783781 rs12755152 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:144,135:176,175:1188 +1 19783939 rs12119730 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:696:142,166:184,207:1293 +1 19784190 rs55967673 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:695:158,154:187,201:942 +1 19784989 rs35547176 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:598:129,133:169,161:710 +1 19785259 rs72653956 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:744:176,166:208,193:1035 +1 19785334 rs2088824 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:743:188,151:222,181:953 +1 19785869 rs10799813 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:694:1,309:0,301:473 +1 19785911 rs10799814 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:706:147,155:131,149:1583 +1 19785944 rs11576592 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:691:132,152:124,147:1338 +1 19786528 rs139962732 TAAGTG T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:624:145,153:32,21:892 +1 19787122 rs113196252 G T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:355:55,61:31,38:827 +1 19787354 rs1060468 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:510:119,111:147,130:698 +1 19788790 rs34989207 CA C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:163,144:135,123:404 +1 19789558 rs17395720 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:671:151,169:168,182:646 +1 19790434 rs4244004 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:495:0,214:41,255:294 +1 19790706 rs67705352 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:529:103,110:150,146:1143 +1 19791086 rs4481878 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:594:0,261:78,334:406 +1 19791956 rs2314147 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:714:0,325:113,401:610 +1 19792495 rs12755348 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:581:0,281:56,306:401 +1 19792562 rs12755497 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:617:142,137:173,176:1246 +1 19792905 rs1548158 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:646:0,269:119,386:503 +1 19793552 rs71008173 T TTTTA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:409:97,99:0,0:321 +1 19793984 rs999974 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:557:0,279:55,296:468 +1 19794047 rs1543945 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:604:0,291:66,330:448 +1 19794187 rs1542875 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:693:0,332:57,370:401 +1 19795675 rs10799815 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:389:92,87:108,101:681 +1 19795831 rs72653963 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:522:108,118:46,41:1166 +1 19795851 rs10917454 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:537:104,115:49,49:1212 +1 19795951 rs10799816 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:466:88,94:130,154:1185 +1 19796105 rs6672955 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:390:93,77:109,104:812 +1 19796169 rs6681041 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:350:0,138:74,212:302 +1 19796666 rs12070072 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:451:111,91:130,117:649 +1 19797248 rs1002365 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:693:167,151:196,184:1115 +1 19797740 rs4912099 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:690:209,188:143,144:936 +1 19798007 rs4912100 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:711:159,159:204,182:1154 +1 19798061 rs58925098 C CGAGAAATGCT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:139,114:26,35:839 +1 19798925 rs12144487 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:124,144:151,163:467 +1 19799010 rs4912103 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:606:0,272:80,341:457 +1 19799432 rs4912003 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:564:0,234:89,323:407 +1 19799629 rs4912104 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:653:0,303:86,355:508 +1 19800026 rs7543701 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,264:93,334:490 +1 19800954 rs4912105 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:577:0,265:68,314:397 +1 19801353 rs10917455 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:574:0,246:94,334:397 +1 19801887 rs2050828 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19801887_A_C:475:0,198:99,285:498 +1 19801898 rs2050827 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19801887_A_C:443:0,191:77,258:419 +1 19801928 rs2050826 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:438:0,187:80,260:439 +1 19802182 rs1500968 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:587:0,260:91,333:486 +1 19802662 . GTAGA G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/0:.:131:0,0,0:0,0,0:139 +1 19802662 . GTAGATAGA G 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:131:0,0,0:0,0,0:139 +1 19802721 rs61765093 G A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xfreebayes;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:255:0,0:0,0:150 +1 19803043 rs10917457 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:568:0,269:47,300:366 +1 19803460 rs12123568 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:609:0,287:56,335:377 +1 19803585 rs7517488 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:591:1,266:77,333:432 +1 19804857 rs9287048 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:739:0,338:101,409:563 +1 19805997 rs10799817 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:127,120:166,150:922 +1 19806031 rs11580551 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:106,121:142,154:830 +1 19806259 rs924519 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:489:101,117:136,141:889 +1 19806692 rs10917459 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:580:0,249:104,342:459 +1 19806850 rs6662017 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:546:0,243:100,314:542 +1 19806867 rs6662021 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:575:0,258:100,327:560 +1 19807021 rs10917460 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:134,148:161,184:851 +1 19808828 rs4912106 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:695:0,305:115,402:565 +1 19809002 rs6669110 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:626:137,136:180,179:1512 +1 19809066 rs6703356 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:140,155:171,198:1168 +1 19809171 rs6664461 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:694:159,135:212,186:1330 +1 19809385 rs6669496 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:600:0,264:99,333:550 +1 19811496 rs75695431 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:111,126:120,147:307 +1 19812455 rs6426805 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:485:0,217:45,262:301 +1 19812988 rs11400167 C CG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:555:0,245:51,51:375 +1 19813191 rs5772849 ATC A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,262:0,0:307 +1 19813758 rs111328303 G GTC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:559:0,240:83,83:358 +1 19814343 rs7540010 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,257:62,297:358 +1 19814717 rs34912410 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:515:3,220:61,61:302 +1 19815711 rs7530223 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:589:0,270:0,270:267 +1 19816163 rs12739730 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:596:1,291:1,288:267 +1 19816415 rs12724468 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:696:0,345:0,345:247 +1 19816756 rs4912107 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:535:0,256:47,291:352 +1 19816884 rs72653988 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:614:158,140:163,152:887 +1 19817257 rs138116726 CAAATAAAT C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:312:0,183:0,0:259 +1 19817461 rs10799818 G C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:506:0,213:53,53:421 +1 19818413 rs7536032 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:470:0,202:82,269:471 +1 19819249 rs1995309 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:140,129:176,165:900 +1 19819745 rs60993504 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:482:142,122:91,81:1047 +1 19819784 . C CT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:.:132:4,26,21:4,26,21:99 +1 19819784 . CT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1|0:.:132:4,26,21:4,26,21:99 +1 19819988 rs113919159 CCAGGCTGCT C 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19819988_CCAGGCTGCT_C:532:102,117:59,47:1493 +1 19820019 rs1995310 G A 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19819988_CCAGGCTGCT_C:540:106,125:43,29:787 +1 19820119 rs1995311 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:681:141,143:200,189:1314 +1 19820854 rs67775937 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:607:143,126:164,166:598 +1 19821369 rs16822407 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:671:154,162:180,172:780 +1 19821795 rs57452248 T A 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:441:79,97:79,97:99 +1 19821840 rs2088825 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:499:142,117:98,72:964 +1 19823576 rs2088826 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:528:112,132:112,132:363 +1 19823746 rs2088827 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:130,105:143,117:448 +1 19824008 rs2314146 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:541:146,134:78,98:838 +1 19824015 rs140019329 CT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xGATK;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:110:3,104:3,104:99 +1 19824124 rs9988429 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:488:89,120:114,133:433 +1 19825026 rs7512774 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:579:142,125:166,139:471 +1 19825657 rs12077728 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:617:134,135:175,173:1260 +1 19825700 rs12077734 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:646:136,142:178,187:1055 +1 19826203 rs58390705 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:707:150,178:174,209:990 +1 19826540 rs12742507 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:636:126,126:126,126:1192 +1 19827659 rs138037325 TG T 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:117,115:40,27:812 +1 19827780 rs6683419 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:137,142:168,195:1121 +1 19828510 rs7550916 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:416:114,95:88,80:429 +1 19828867 rs7556377 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1|1:19828867_T_C:549:0,245:0,241:341 +1 19828869 rs10917464 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0|1:19828867_T_C:544:134,106:134,106:329 +1 19829221 rs10799819 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:517:101,128:137,159:723 +1 19829686 rs67032849 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:508:103,121:127,155:626 +1 19830179 rs56740307 C CA 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:525:124,135:115,123:275 +1 19830373 rs12083293 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:614:141,148:141,148:486 +1 19830555 rs12735636 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:560:121,106:163,140:823 +1 19831227 rs66613305 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:662:158,140:183,177:1015 +1 19831352 rs57033568 CAA C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=2;callsetnames=HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:146:42,99:42,99:198 +1 19831367 rs12407925 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:254:81,173:50,120:633 +1 19832175 rs55770736 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:608:130,135:164,184:989 +1 19832567 rs12084204 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:633:132,154:160,187:916 +1 19834036 rs7524695 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:520:0,235:71,289:443 +1 19834267 rs10917466 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:124,118:151,152:912 +1 19834963 rs113272498 C T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:521:73,135:41,37:942 +1 19835415 rs6426808 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:628:162,126:197,147:813 +1 19835716 rs35206814 C CAG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:608:0,285:54,54:410 +1 19835812 rs10917467 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:583:115,130:165,172:989 +1 19836259 rs11380132 T TG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:531:0,233:69,69:427 +1 19836542 rs368751412 A AG 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:652:143,148:40,26:751 +1 19837272 rs7549219 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:559:114,132:140,159:724 +1 19837558 rs4362008 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:662:154,146:178,180:1193 +1 19837932 rs12087005 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:659:156,141:186,176:1114 +1 19837969 rs10799821 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:621:145,127:190,159:821 +1 19838685 rs60066365 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:633:145,140:189,163:952 +1 19839029 rs4130335 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:682:173,141:195,169:665 +1 19839139 rs4130336 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:685:160,140:203,178:1115 +1 19839475 rs4912108 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,275:56,316:392 +1 19839821 rs10799822 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:478:107,101:134,125:844 +1 19839995 rs12566679 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:562:115,129:149,173:829 +1 19840853 rs12567678 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:121,157:150,190:740 +1 19840912 rs10799823 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:119,146:155,169:693 +1 19842550 rs75138072 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:489:156,122:100,76:1114 +1 19842681 rs28805688 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:475:113,110:128,120:515 +1 19842810 rs4912005 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:504:0,229:49,270:355 +1 19843032 rs28630511 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:642:133,158:170,182:926 +1 19843354 rs10917468 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:581:131,122:177,154:1010 +1 19843401 rs12088373 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:657:149,127:207,173:1333 +1 19844320 rs12093766 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:534:111,122:144,158:961 +1 19845206 rs10917470 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:586:118,136:153,174:928 +1 19847612 rs10917471 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:682:146,155:193,188:777 +1 19848723 rs11590110 T C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:631:138,134:0,0:953 +1 19849656 rs9783019 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:781:167,199:195,214:1005 +1 19850303 rs113367738 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:482:99,105:129,127:551 +1 19850712 rs10917472 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:651:185,185:139,134:354 +1 19850789 rs10917473 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:621:0,283:50,333:341 +1 19851031 rs12726742 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:734:154,176:199,211:1202 +1 19851557 rs9782890 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:541:66,308:1,243:283 +1 19851578 rs61765106 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:570:122,126:154,159:1000 +1 19851816 rs35384990 C CT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:383:5,161:0,0:259 +1 19851960 rs9783061 G A 50 PASS platforms=4;platformnames=Illumina,10X,CG,Solid;datasets=4;datasetnames=HiSeqPE300x,10XChromium,CGnormal,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:573:59,317:0,254:358 +1 19852127 rs10917474 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:629:1,268:95,356:452 +1 19852277 rs4279874 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:639:0,285:90,356:404 +1 19853400 rs55831826 G GAGACAAACT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:598:0,298:21,21:279 +1 19853625 rs28460407 G T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:19853625_G_T:781:0,398:0,0:259 +1 19853629 rs71008181 T TA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|1:19853625_G_T:769:0,397:0,0:259 +1 19853670 rs6699496 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:743:0,377:0,0:259 +1 19855265 rs4912109 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:645:0,297:75,363:360 +1 19855855 rs12064336 A C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:611:137,128:170,170:725 +1 19856084 rs4328096 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:528:0,243:64,291:420 +1 19856751 rs4244005 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:622:0,278:88,354:461 +1 19856944 rs71008184 A ATGATCTTGGACTTTC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,260:111,111:441 +1 19857167 rs28391543 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:821:205,191:205,220:1179 +1 19857230 rs141434246 GTTA G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:561:135,141:5,8:309 +1 19858213 rs7553353 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:706:172,171:173,190:423 +1 19858271 rs6426809 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:710:1,332:66,379:405 +1 19858460 rs7418674 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:494:0,218:53,271:341 +1 19858647 rs5772851 CT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:370:1,170:1,170:99 +1 19858684 rs12059827 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:540:107,117:138,163:1246 +1 19858807 rs4350219 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:650:0,288:92,365:436 +1 19859123 rs6687048 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:638:0,289:87,356:486 +1 19860697 rs10917475 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:461:94,97:129,137:847 +1 19860840 rs10917476 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:591:104,148:166,178:1145 +1 19861106 rs10917477 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:609:128,105:0,0:1524 +1 19862035 rs34334474 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:558:117,119:157,158:1333 +1 19863352 rs10917480 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:601:162,119:162,119:306 +1 19864842 rs67714993 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:678:179,195:140,161:816 +1 19865249 rs10158370 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19865249_C_T:438:93,76:126,90:476 +1 19865254 rs10158617 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:19865249_C_T:436:92,78:121,93:499 +1 19865314 rs10157867 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:500:108,104:31,29:729 +1 19866364 rs10917482 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:613:145,135:168,155:555 +1 19866724 rs4912112 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:753:1,361:54,392:396 +1 19867202 rs35728216 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:649:159,137:191,154:483 +1 19867275 rs12756623 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:793:176,192:27,18:499 +1 19867280 rs12120568 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:794:0,381:39,39:456 +1 19867442 rs10917483 A G 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:491:0,233:0,233:198 +1 19867602 rs35282841 C T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:384:92,73:92,73:198 +1 19868360 rs6665872 A G 50 PASS platforms=3;platformnames=10X,Illumina,CG;datasets=3;datasetnames=10XChromium,HiSeqPE300x,CGnormal;callsets=4;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,.,.;callable=CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:587:174,154:0,0:808 +1 19868407 rs10917485 T C 50 PASS platforms=4;platformnames=10X,Illumina,CG,Solid;datasets=4;datasetnames=10XChromium,HiSeqPE300x,CGnormal,SolidSE75bp;callsets=5;callsetnames=10XGATKhaplo,HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:611:164,180:0,0:941 +1 19874211 rs56412618 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:578:140,124:164,152:833 +1 19874384 rs6681722 C A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:690:1,294:97,97:361 +1 19875017 rs6692481 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:19875017_T_C:593:150,117:22,32:549 +1 19875027 rs61765112 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0|1:19875017_T_C:595:154,116:22,29:562 +1 19875060 rs61765113 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:611:153,130:17,21:529 +1 19875412 rs67690862 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:137,140:178,163:949 +1 19875722 rs1856781 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:590:0,261:74,335:387 +1 19876025 rs4508039 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:762:185,171:212,183:786 +1 19876438 rs4912122 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:639:155,134:193,154:864 +1 19877626 rs2314327 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:600:145,134:166,153:733 +1 19877989 rs2872591 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:578:124,136:27,29:694 +1 19880146 rs67259094 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:594:120,131:159,178:977 +1 19880238 rs7537558 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:565:0,254:56,307:342 +1 19880414 rs35688840 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:125,125:175,144:1017 +1 19881088 rs4912124 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:474:0,207:61,268:367 +1 19881213 rs4912125 A G 50 PASS platforms=3;platformnames=Illumina,10X,CG;datasets=3;datasetnames=HiSeqPE300x,10XChromium,CGnormal;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo,CGnormal;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:424:67,243:0,176:371 +1 19881388 . A C 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=2;callsetnames=CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 1/1:.:301:37,38:37,38:957 +1 19881389 . G A 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=2;callsetnames=CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:301:38,37:38,37:957 +1 19881441 rs4912128 C G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:435:72,66:30,39:978 +1 19881474 rs34976695 C CA 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:388:71,67:29,23:433 +1 19881693 rs10799826 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:641:140,161:140,161:302 +1 19882170 rs10917493 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:772:0,373:48,406:376 +1 19882466 rs10753564 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:495:0,190:48,238:315 +1 19882738 rs36067647 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:618:139,130:184,166:967 +1 19883695 rs10917494 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:578:150,164:119,129:707 +1 19883863 rs7554333 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:488:0,216:63,274:358 +1 19884634 rs4612647 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:451:0,217:0,211:277 +1 19884685 rs4500346 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:547:2,251:1,235:399 +1 19884791 rs72656035 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:670:137,181:150,195:901 +1 19885125 rs10753565 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:650:0,297:56,349:350 +1 19885496 rs60781754 CA C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:392:0,183:0,183:99 +1 19886104 rs10737478 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:592:0,271:81,336:460 +1 19886480 rs10753566 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:673:0,298:91,381:471 +1 19886592 rs10753567 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:668:0,322:70,356:476 +1 19886937 rs35720790 TA T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:448:116,113:96,98:369 +1 19887126 rs10737479 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:586:0,273:60,315:410 +1 19887254 rs10753568 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:617:153,135:179,154:467 +1 19887483 rs12032223 G T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:457:60,88:0,0:827 +1 19887535 rs10799827 T G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:473:0,189:34,223:289 +1 19887681 rs10917495 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:482:0,200:48,248:334 +1 19887955 rs10799828 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:619:1,296:50,329:364 +1 19888271 rs7546144 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:641:59,353:0,294:331 +1 19888431 rs7553469 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:669:0,317:54,354:357 +1 19888654 rs10753569 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:568:1,234:65,288:394 +1 19888836 rs12132482 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:116,108:134,144:498 +1 19889168 rs12566505 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:713:147,178:196,191:1199 +1 19889226 rs12741634 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:680:159,138:202,183:1074 +1 19889272 rs12736909 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:727:176,150:215,188:1153 +1 19889374 rs72656037 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:637:139,154:166,180:1149 +1 19889780 rs4298762 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:545:0,245:69,307:387 +1 19889922 rs1572824 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:626:0,284:68,68:403 +1 19889959 rs1572823 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:591:0,270:68,68:417 +1 19890114 rs34105403 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:613:127,139:166,176:1016 +1 19890331 rs34087508 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:612:135,137:168,174:827 +1 19891086 rs10799829 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:613:1,296:52,337:337 +1 19891166 rs71008194 G GGCATTTATTAAACACCT 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:563:132,131:9,32:355 +1 19891434 rs10429881 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:698:0,311:65,376:360 +1 19891481 rs12740615 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:618:132,143:154,169:567 +1 19892367 rs6426811 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:445:0,197:51,248:342 +1 19892785 rs34980758 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:488:99,118:116,146:692 +1 19892800 rs10917497 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:444:0,202:38,238:347 +1 19893019 rs12085318 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:464:0,199:61,260:366 +1 19893155 rs12133889 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:429:112,115:0,0:1001 +1 19894795 rs12745911 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:523:118,108:155,132:644 +1 19894902 rs3018824 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:518:0,225:64,289:334 +1 19896220 rs3133373 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:721:0,347:66,382:457 +1 19896458 rs35829773 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:776:156,195:196,229:1275 +1 19896849 rs55708467 CT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:439:22,216:2,196:122 +1 19897831 rs2314328 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_10XGATKhaplo_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:640:0,290:81,368:357 +1 19898303 rs1770482 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:625:0,288:75,346:444 +1 19899284 rs2745211 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:573:148,116:174,135:542 +1 19899300 rs2792028 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:556:0,259:60,316:348 +1 19899350 rs2745212 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:555:118,116:178,149:837 +1 19899537 rs2792029 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:596:0,281:47,318:344 +1 19899689 rs2792030 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:525:129,101:155,127:704 +1 19900298 rs2012549 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:548:133,108:159,142:899 +1 19901005 rs16822571 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:677:160,132:206,167:855 +1 19901325 rs143452526 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:155,123:189,157:851 +1 19903331 rs35194017 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:119,126:173,179:1222 +1 19904076 rs72656043 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:765:182,168:213,199:1195 +1 19905646 rs717536 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:557:127,140:134,158:944 +1 19907646 rs72211980 C CTT 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:297:72,58:62,43:292 +1 19907756 rs113023010 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:502:114,103:140,129:592 +1 19908814 rs12085935 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:593:128,131:169,166:1163 +1 19909258 rs56084136 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:586:134,142:27,26:726 +1 19910978 rs2745213 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:502:121,105:143,119:367 +1 19911416 rs997434 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:651:141,149:192,167:755 +1 19911802 rs2792036 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:624:137,143:173,163:551 +1 19912041 rs2792037 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:731:0,320:110,416:465 +1 19912382 rs17363660 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:535:155,98:169,110:789 +1 19914911 rs138400261 C G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:540:105,123:157,157:750 +1 19915213 rs71638680 TGCCACCATGCCAAGCTAA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:405:103,78:0,0:436 +1 19916784 rs1770480 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:725:184,150:201,191:1016 +1 19916847 rs1770479 A C 50 PASS platforms=3;platformnames=Illumina,CG,Solid;datasets=3;datasetnames=HiSeqPE300x,CGnormal,SolidSE75bp;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,SolidSE75GATKHC;datasetsmissingcall=10,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:703:0,314:87,397:340 +1 19917950 rs34868105 CT C 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=1;callsetnames=HiSeqPE300xGATK;datasetsmissingcall=.,.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:148:3,137:3,137:99 +1 19920079 rs35998911 T TC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:751:160,159:51,52:1046 +1 19921478 rs35009406 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:658:135,155:171,184:729 +1 19921747 rs2745217 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:746:172,166:213,190:1356 +1 19923313 rs4912130 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:514:119,108:152,136:849 +1 19923997 rs10917499 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:575:114,146:135,176:807 +1 19924325 rs72656050 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:663:144,163:166,198:1143 +1 19924662 rs2792043 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:745:175,152:223,197:1399 +1 19925934 rs12747334 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:648:165,130:191,153:1021 +1 19926208 rs12057812 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:641:132,144:169,193:1348 +1 19926825 . A C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:562:0,131,116:44,37,0:1064 +1 19926825 . AAGT A 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:562:0,131,116:44,37,0:1064 +1 19928151 rs371173323 CTATT C 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=4;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidSE75bp;callsets=5;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:729:152,165:52,41:788 +1 19930639 rs2745220 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:753:176,152:219,198:1268 +1 19932633 rs2745222 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:634:0,320:49,323:446 +1 19932825 rs34639335 GT G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:631:130,142:44,41:1116 +1 19933261 rs12066678 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:695:142,162:180,203:1062 +1 19935118 rs138778783 T TA 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:565:115,131:27,43:666 +1 19936090 rs1737417 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:768:1,368:69,405:480 +1 19937023 rs12062511 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:500:102,118:126,139:1030 +1 19942931 rs12073300 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:660:161,161:165,171:900 +1 19944395 rs200520510 T TA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:527:133,129:0,0:244 +1 19945189 rs1770489 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:546:127,137:139,144:701 +1 19945888 rs1770491 A T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:808:228,223:175,187:902 +1 19946980 rs1737426 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:724:0,330:75,396:447 +1 19947256 rs10489858 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:659:147,156:185,177:823 +1 19947806 rs10489859 G C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:580:132,132:164,157:1011 +1 19947973 rs1320978 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:510:130,83:48,43:1228 +1 19948507 rs728611 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:729:163,149:57,60:1572 +1 19948868 rs2281238 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:803:201,181:211,213:958 +1 19949414 . CTT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=3;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes;datasetsmissingcall=10,.,.,.;callable=CS_HiSeqPE300xGATK_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:328:58,82:43,72:151 +1 19950062 rs1737428 T C 50 PASS platforms=5;platformnames=Illumina,CG,Ion,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,IonExome,10XChromium,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,IonExomeTVC,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:794:151,149:197,196:1376 +1 19953118 rs1534985 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:685:0,288:123,406:507 +1 19953165 rs2281237 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:642:152,147:173,170:906 +1 19954008 rs880553 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:492:131,92:157,110:903 +1 19954859 rs78876955 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:98,111:142,140:726 +1 19956246 rs3748744 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:699:136,154:134,147:1577 +1 19956374 rs2792059 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:658:0,301:87,363:500 +1 19957088 rs369519392 CCACA C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:282:70,59:70,59:198 +1 19957125 rs35796134 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt,CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:533:148,177:85,105:1147 +1 19957908 rs72656073 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:768:170,172:217,205:797 +1 19958007 rs60433389 CT C 50 PASS platforms=2;platformnames=Illumina,CG;datasets=2;datasetnames=HiSeqPE300x,CGnormal;callsets=2;callsetnames=HiSeqPE300xGATK,CGnormal;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:195:87,105:76,92:255 +1 19958745 . C CGT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1|0:.:280:4,59,68:0,0,0:160 +1 19958745 . C CGTGTGTGT 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0|1:.:280:4,59,68:0,0,0:160 +1 19959100 rs35450173 A AT 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:471:104,98:0,0:285 +1 19959452 rs13375324 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:490:70,129:22,27:682 +1 19959989 rs35499239 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:657:136,155:174,185:954 +1 19960858 rs6426818 T A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:610:1,267:99,338:538 +1 19962138 rs56379291 T TTTATTA 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:470:117,114:0,0:256 +1 19962874 rs7523079 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:666:158,148:183,173:882 +1 19963047 rs7523192 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:792:180,174:222,220:1278 +1 19963564 rs10799830 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:534:106,125:129,141:480 +1 19964699 rs12408388 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:598:126,144:160,171:920 +1 19965158 rs72656076 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:654:154,128:209,160:900 +1 19965770 rs10917503 C G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:599:137,136:167,161:767 +1 19967905 rs72656078 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:620:142,132:177,173:1008 +1 19968543 rs12040294 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:536:120,121:135,149:407 +1 19970853 rs6669757 C A 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:536:127,141:127,141:198 +1 19971135 rs115614639 C A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt,CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:514:123,116:0,0:295 +1 19971238 rs2745238 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,HiSeqPE300xfreebayes,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:562:35,301:0,266:259 +1 19972586 rs11810271 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:525:119,110:145,143:642 +1 19972826 rs3828100 G A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:610:150,126:188,152:874 +1 19973358 rs7522389 G T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:657:153,136:191,180:1447 +1 19973370 rs12736790 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:634:145,138:183,174:1424 +1 19973564 rs7535952 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:627:161,125:187,148:1118 +1 19974214 rs10917507 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:490:100,110:141,138:942 +1 19974358 rs71579813 TGC T 50 PASS platforms=1;platformnames=Illumina;datasets=1;datasetnames=HiSeqPE300x;callsets=2;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=.,10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:339:85,79:0,0:144 +1 19974376 rs190360783 T C 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt;arbitrated=TRUE GT:PS:DP:ADALL:AD:GQ 0/1:.:362:84,95:0,0:253 +1 19974669 rs2314331 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:589:137,122:171,159:1102 +1 19974981 rs2745241 G T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:547:114,122:151,163:824 +1 19975045 rs3790742 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:563:126,122:160,154:869 +1 19975210 rs3790743 A G 50 PASS platforms=4;platformnames=CG,Illumina,10X,Solid;datasets=5;datasetnames=CGnormal,HiSeqPE300x,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,HiSeqPE300xGATK,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xfreebayes_filt,CS_SolidPE50x50GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:412:0,148:92,92:558 +1 19975841 rs36030380 A AATT 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:446:108,116:0,0:259 +1 19975877 rs10917508 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:655:187,170:0,0:714 +1 19976313 rs10753570 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:615:147,130:186,148:415 +1 19976782 rs1115163 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:825:180,176:172,162:1727 +1 19977525 rs1894254 A T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:626:146,141:173,163:947 +1 19977784 rs35730341 G GC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:459:0,203:51,51:388 +1 19978467 rs2254885 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 1/1:.:618:0,271:75,75:323 +1 19978504 rs12046364 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt,CS_HiSeqPE300xfreebayes_filt,CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:549:103,139:31,31:782 +1 19978895 rs753612 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:657:139,148:185,175:766 +1 19978954 rs3838430 C CG 50 PASS platforms=2;platformnames=CG,Illumina;datasets=2;datasetnames=CGnormal,HiSeqPE300x;callsets=3;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK;datasetsmissingcall=10,.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:128,139:31,17:350 +1 19979608 rs11587840 G A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:488:88,98:125,125:694 +1 19981023 rs7546665 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:648:133,166:152,195:700 +1 19981313 rs72656086 T G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:622:140,152:165,168:993 +1 19981451 rs3828101 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:489:109,105:36,44:951 +1 19981791 rs2294630 A G 50 PASS platforms=5;platformnames=Illumina,CG,10X,Ion,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,IonExome,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,IonExomeTVC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable,CS_IonExomeTVC_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:597:96,120:132,158:1110 +1 19982352 rs55976853 C A 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:502:116,99:152,135:1078 +1 19984100 rs11430584 G GC 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 1/1:.:447:0,197:50,50:378 +1 19984461 rs3087566 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:524:123,111:149,141:846 +1 19986009 rs4912136 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,CGnormal,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_HiSeqPE300xGATK_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:340:64,103:0,0:717 +1 19986252 rs4912014 C G 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:474:100,110:27,24:668 +1 19986283 rs10579221 TGA T 50 PASS platforms=3;platformnames=CG,Illumina,10X;datasets=3;datasetnames=CGnormal,HiSeqPE300x,10XChromium;callsets=4;callsetnames=CGnormal,HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:453:95,114:28,13:473 +1 19987294 rs6693503 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:602:147,122:182,151:1097 +1 19987713 rs6689158 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:621:168,185:123,130:992 +1 19987783 rs6691624 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_10XGATKhaplo_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:587:128,129:159,150:524 +1 19987866 rs2092393 C T 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:592:113,121:168,173:1180 +1 19989205 rs2050122 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:576:117,123:150,153:741 +1 19990289 rs6703842 A G 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:346:56,69:75,106:540 +1 19992066 rs10917509 T C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:549:119,143:139,152:414 +1 19993485 rs4912138 A G 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:492:102,107:135,148:1157 +1 19994097 rs6671732 T C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable;filt=CS_SolidSE75GATKHC_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:583:119,124:162,173:1053 +1 19994873 rs2314332 T A 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable,CS_10XGATKhaplo_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:554:114,123:150,160:843 +1 19996193 rs2872594 C T 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=4;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidSE75bp;callsets=5;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidSE75GATKHC;datasetsmissingcall=.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:590:115,134:146,193:1211 +1 19998894 rs200380142 TTCC T 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:19998894_TTCC_T:446:116,108:0,0:246 +1 19998906 . A AGAG 50 PASS platforms=2;platformnames=Illumina,10X;datasets=2;datasetnames=HiSeqPE300x,10XChromium;callsets=3;callsetnames=HiSeqPE300xfreebayes,HiSeqPE300xGATK,10XGATKhaplo;datasetsmissingcall=.,.,.,.;callable=CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0|1:19998894_TTCC_T:450:122,112:0,0:241 +1 19999001 rs6684942 G C 50 PASS platforms=3;platformnames=Illumina,CG,10X;datasets=3;datasetnames=HiSeqPE300x,CGnormal,10XChromium;callsets=4;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo;datasetsmissingcall=.,.,.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable;filt=CS_CGnormal_filt GT:PS:DP:ADALL:AD:GQ 0/1:.:503:120,110:120,110:268 +1 19999645 rs6699866 A C 50 PASS platforms=4;platformnames=Illumina,CG,10X,Solid;datasets=5;datasetnames=HiSeqPE300x,CGnormal,10XChromium,SolidPE50x50bp,SolidSE75bp;callsets=6;callsetnames=HiSeqPE300xGATK,CGnormal,HiSeqPE300xfreebayes,10XGATKhaplo,SolidPE50x50GATKHC,SolidSE75GATKHC;datasetsmissingcall=.;callable=CS_HiSeqPE300xGATK_callable,CS_CGnormal_callable,CS_HiSeqPE300xfreebayes_callable GT:PS:DP:ADALL:AD:GQ 0/1:.:792:176,192:217,210:1029 diff --git a/samples/custom_encoder/pipeline.py b/samples/custom_encoder/pipeline.py new file mode 100644 index 0000000..42c95cf --- /dev/null +++ b/samples/custom_encoder/pipeline.py @@ -0,0 +1,130 @@ +#!/usr/bin/env/python3 + +# +# Copyright 2020 NVIDIA CORPORATION. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +# +"""A sample program showcasing the use of custom encoders based on scalar VCF keys.""" + +import nemo +from nemo import logging +from nemo.core.neural_types import VoidType, LabelsType +from nemo.backends.pytorch.common.losses import CrossEntropyLossNM +from nemo.backends.pytorch.torchvision.helpers import eval_epochs_done_callback, eval_iter_callback +import os + +from variantworks.encoders import ZygosityLabelEncoder +from variantworks.dataloader import VariantDataLoader +from variantworks.io.vcfio import VCFReader + +from custom_encoder import CustomEncoder +from custom_model import MLP + + +def main(): + """Training function.""" + nf = nemo.core.NeuralModuleFactory( + placement=nemo.core.neural_factory.DeviceType.GPU) + + # Scalar features to use from VCF + format_keys = ["AD", "ADALL", "DP"] + + # Create a model. AD and ADALL are "R" header type, so each + # record has 2 values for each - one for reference and once + # for alt allele. + model = MLP(5, 5, 3) + + cwd = os.path.dirname(os.path.realpath(__file__)) + train_vcf = VCFReader(os.path.join(cwd, "data", "train.vcf"), format_keys=["*"]) + eval_vcf = VCFReader(os.path.join("data", "eval.vcf"), format_keys=["*"]) + + encoder = CustomEncoder(vcf_format_keys=format_keys) + + train_dataset = VariantDataLoader(VariantDataLoader.Type.TRAIN, + [train_vcf], + batch_size=32, shuffle=True, + input_encoder=encoder, + encoder_dims=[('B', 'D')], + encoder_neural_types=[VoidType()], + label_encoder=ZygosityLabelEncoder(), + label_dims=[('B')], + label_neural_types=[LabelsType()], + num_workers=32) + + vz_ce_loss = CrossEntropyLossNM(logits_ndim=2) + encoding, labels = train_dataset() + pred = model(encoding=encoding) + vz_loss = vz_ce_loss(logits=pred, labels=labels) + + callbacks = [] + + # Logger callback + loggercallback = nemo.core.SimpleLossLoggerCallback( + tensors=[vz_loss], + step_freq=500, + print_func=lambda x: logging.info(f'Train Loss: {str(x[0].item())}'), + ) + callbacks.append(loggercallback) + + # Checkpointing models through NeMo callback + checkpointcallback = nemo.core.CheckpointCallback( + folder="./temp-model", + load_from_folder=None, + # Checkpointing frequency in steps + step_freq=-1, + # Checkpointing frequency in epochs + epoch_freq=1, + # Number of checkpoints to keep + checkpoints_to_keep=1, + # If True, CheckpointCallback will raise an Error if restoring fails + force_load=False + ) + callbacks.append(checkpointcallback) + + eval_dataset = VariantDataLoader(VariantDataLoader.Type.EVAL, + [eval_vcf], + batch_size=32, shuffle=True, + input_encoder=encoder, + encoder_dims=[('B', 'D')], + encoder_neural_types=[VoidType()], + label_encoder=ZygosityLabelEncoder(), + label_dims=[('B')], + label_neural_types=[LabelsType()], + num_workers=32) + + eval_vz_ce_loss = CrossEntropyLossNM(logits_ndim=2) + eval_encoding, eval_vz_labels = eval_dataset() + eval_vz = model(encoding=eval_encoding) + eval_vz_loss = eval_vz_ce_loss(logits=eval_vz, labels=eval_vz_labels) + + # Add evaluation callback + evaluator_callback = nemo.core.EvaluatorCallback( + eval_tensors=[eval_vz_loss, eval_vz, eval_vz_labels], + user_iter_callback=eval_iter_callback, + user_epochs_done_callback=eval_epochs_done_callback, + eval_step=5000, + eval_epoch=1, + eval_at_start=True, + ) + callbacks.append(evaluator_callback) + + # Invoke the "train" action. + nf.train([vz_loss], + callbacks=callbacks, + optimization_params={"num_epochs": 100, "lr": 0.0001}, + optimizer="adam") + + +if __name__ == "__main__": + main() diff --git a/tests/test_integration.py b/tests/test_integration.py index 18fd3e8..385e933 100644 --- a/tests/test_integration.py +++ b/tests/test_integration.py @@ -23,7 +23,7 @@ from nemo.backends.pytorch.torchvision.helpers import eval_epochs_done_callback, eval_iter_callback import torch -from variantworks.dataloader import ReadPileupDataLoader +from variantworks.dataloader import VariantDataLoader from variantworks.io.vcfio import VCFReader from variantworks.networks import AlexNet from variantworks.encoders import ZygosityLabelDecoder @@ -50,18 +50,18 @@ def test_simple_vc_trainer(): alexnet = AlexNet(num_input_channels=1, num_output_logits=3) # Create train DAG - dataset_train = ReadPileupDataLoader(ReadPileupDataLoader.Type.TRAIN, [vcf_loader], - batch_size=32, shuffle=True) + dataset_train = VariantDataLoader(VariantDataLoader.Type.TRAIN, [vcf_loader], + batch_size=32, shuffle=True) vz_ce_loss = CrossEntropyLossNM(logits_ndim=2) - vz_labels, encoding = dataset_train() + encoding, vz_labels = dataset_train() vz = alexnet(encoding=encoding) vz_loss = vz_ce_loss(logits=vz, labels=vz_labels) # Create evaluation DAG using same dataset as training - dataset_eval = ReadPileupDataLoader(ReadPileupDataLoader.Type.EVAL, [vcf_loader], - batch_size=32, shuffle=False) + dataset_eval = VariantDataLoader(VariantDataLoader.Type.EVAL, [vcf_loader], + batch_size=32, shuffle=False) vz_ce_loss_eval = CrossEntropyLossNM(logits_ndim=2) - vz_labels_eval, encoding_eval = dataset_eval() + encoding_eval, vz_labels_eval = dataset_eval() vz_eval = alexnet(encoding=encoding_eval) vz_loss_eval = vz_ce_loss_eval(logits=vz_eval, labels=vz_labels_eval) @@ -118,8 +118,8 @@ def test_simple_vc_infer(): bam = os.path.join(test_data_dir, "small_bam.bam") labels = os.path.join(test_data_dir, "candidates.vcf.gz") vcf_loader = VCFReader(vcf=labels, bams=[bam], is_fp=False) - test_dataset = ReadPileupDataLoader(ReadPileupDataLoader.Type.TEST, [vcf_loader], batch_size=32, - shuffle=False) + test_dataset = VariantDataLoader(VariantDataLoader.Type.TEST, [vcf_loader], batch_size=32, + shuffle=False) # Neural Network alexnet = AlexNet(num_input_channels=1, num_output_logits=3) diff --git a/variantworks/dataloader.py b/variantworks/dataloader.py index d8f3e7b..7fbb308 100644 --- a/variantworks/dataloader.py +++ b/variantworks/dataloader.py @@ -152,7 +152,7 @@ def dataset(self): return None -class ReadPileupDataLoader(DataLayerNM): +class VariantDataLoader(DataLayerNM): """Data loader class to train zygosity predictions from variant pileup encodings.""" class Type(Enum): @@ -170,50 +170,77 @@ def output_ports(self): Returns: NeMo output port. """ - if self.data_loader_type == ReadPileupDataLoader.Type.TEST: - return { - "encoding": NeuralType(('B', 'C', 'H', 'W'), ReadPileupNeuralType()), - } - else: - return { - "label": NeuralType(tuple('B'), VariantZygosityNeuralType()), - "encoding": NeuralType(('B', 'C', 'H', 'W'), ReadPileupNeuralType()), - } - - def __init__(self, data_loader_type, variant_loaders, batch_size=32, shuffle=True, num_workers=4, - sample_encoder=PileupEncoder(window_size=100, max_reads=100, layers=[PileupEncoder.Layer.READ]), - label_encoder=ZygosityLabelEncoder()): - """Construct a data loader. + port_dict = {} + + # Add outut ports for encoding. + for i, key in enumerate(self.encoder_keys): + port_dict[key] = NeuralType(self.encoder_dims[i], self.encoder_neural_types[i]) + + # Add output ports for label if needed. + if self.data_loader_type != VariantDataLoader.Type.TEST: + for i, key in enumerate(self.label_keys): + port_dict[key] = NeuralType(self.label_dims[i], self.label_neural_types[i]) + + return port_dict + + def __init__(self, + data_loader_type, + variant_loaders, + batch_size=32, + shuffle=True, + num_workers=4, + input_encoder=PileupEncoder(window_size=100, max_reads=100, layers=[PileupEncoder.Layer.READ]), + encoder_keys=["encodings"], + encoder_dims=[('B', 'C', 'H', 'W')], + encoder_neural_types=[ReadPileupNeuralType()], + label_encoder=ZygosityLabelEncoder(), + label_keys=["labels"], + label_dims=[tuple('B')], + label_neural_types=[VariantZygosityNeuralType()]): + """Construct a data loader that generates input and label encodings from Variant entries. Args: - data_loader_type : Type of data loader (ReadPileupDataLoader.Type.TRAIN/EVAL/TEST) + data_loader_type : Type of data loader (VariantDataLoader.Type.TRAIN/EVAL/TEST) variant_loaders : A list of loader classes for variants batch_size : batch size for data loader [32] shuffle : shuffle dataset [True] num_workers : numbers of parallel data loader threads [4] - sample_encoder : Custom pileup encoder for variant [READ pileup encoding, window size 100] + input_encoder : Custom input encoder for variant [READ pileup encoding, window size 100] + encoder_keys : Names for tensors returned by variant encoder. ["encodings"] + encoder_dims : NeuralType dimensions for tensors returned by variant encoder. [('B', 'C', 'H', 'W')] + encoder_neural_types : Neural types for variant encoder tensors. [ReadPileupNeuralType()] label_encoder : Custom label encoder for variant [ZygosityLabelEncoder] (Only applicable when type=TRAIN/EVAL) + label_keys : Names for tensors returned by label encoder. ["labels"] + label_dims : NeuralType dimensions for tensors returned by label encoder. [('B')] + label_neural_types : Neural types for variant label tensors. [VariantZygosityNeuralType()] Returns: Instance of class. """ super().__init__() self.data_loader_type = data_loader_type - self.variant_loaders = variant_loaders - self.sample_encoder = sample_encoder - self.label_encoder = label_encoder + self.encoder_keys = encoder_keys + self.encoder_dims = encoder_dims + self.encoder_neural_types = encoder_neural_types + self.label_keys = label_keys + self.label_dims = label_dims + self.label_neural_types = label_neural_types class DatasetWrapper(TorchDataset): """A wrapper around Torch dataset class to generate individual samples.""" - def __init__(self, data_loader_type, sample_encoder, variant_loaders, label_encoder): + def __init__(self, + data_loader_type, + variant_loaders, + input_encoder, + label_encoder): """Construct a dataset wrapper. Args: data_loader_type : Type of data loader - sample_encoder : Custom pileup encoder for variant variant_loaders : A list of loader classes for variants + input_encoder : Custom pileup encoder for variant label_encoder : Custom label encoder for variant Returns: @@ -222,7 +249,7 @@ def __init__(self, data_loader_type, sample_encoder, variant_loaders, label_enco super().__init__() self.variant_loaders = variant_loaders self.label_encoder = label_encoder - self.sample_encoder = sample_encoder + self.input_encoder = input_encoder self.data_loader_type = data_loader_type self._len = sum([len(loader) for loader in self.variant_loaders]) @@ -243,18 +270,16 @@ def __len__(self): def __getitem__(self, idx): sample = self._map_idx_to_sample(idx) - if self.data_loader_type == ReadPileupDataLoader.Type.TEST: - sample = self.sample_encoder(sample) - - return sample + if self.data_loader_type == VariantDataLoader.Type.TEST: + return self.input_encoder(sample) else: - encoding = self.sample_encoder(sample) + encoding = self.input_encoder(sample) label = self.label_encoder(sample) - return label, encoding + return encoding, label dataset = DatasetWrapper( - data_loader_type, self.sample_encoder, self.variant_loaders, self.label_encoder) + data_loader_type, variant_loaders, input_encoder, label_encoder) sampler = None if self._placement == DeviceType.AllGpu: diff --git a/variantworks/io/vcfio.py b/variantworks/io/vcfio.py index f02d0ff..e40094b 100644 --- a/variantworks/io/vcfio.py +++ b/variantworks/io/vcfio.py @@ -420,8 +420,8 @@ def _create_df(self, vcf, variant_list, num_variants): if header_number == "A": df_dict[df_key].append(val[alt_idx]) elif header_number == "R": - df_dict[df_key + "_REF"].append(val[0]) - df_dict[df_key + "_ALT"].append(val[alt_idx + 1]) + df_dict[df_key + "-0"].append(val[0]) + df_dict[df_key + "-1"].append(val[alt_idx + 1]) elif header_number.isdigit(): header_number = int(header_number) if header_number <= 1: @@ -493,8 +493,8 @@ def fix_gt(gt_alt_id, loop_alt_id): if header_number == "A": df_dict[df_key].append(val[alt_idx]) elif header_number == "R": - df_dict[df_key + "_REF"].append(val[0]) - df_dict[df_key + "_ALT"].append(val[alt_idx + 1]) + df_dict[df_key + "-0"].append(val[0]) + df_dict[df_key + "-1"].append(val[alt_idx + 1]) elif header_number.isdigit(): header_number = int(header_number) if header_number <= 1: