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lines changed Original file line number Diff line number Diff line change @@ -36,14 +36,6 @@ destinations:
3636 scheduling :
3737 require :
3838 - alphafold
39- tpv_pulsar_nasty_java :
40- inherits : tpv_pulsar
41- runner : pulsar_tpv_runner
42- params :
43- singularity_run_extra_arguments : ' --env _JAVA_OPTIONS="-Xmx{int(mem)}g -Djava.io.tmpdir=$SCRATCHDIR"'
44- scheduling :
45- require :
46- - nasty-java
4739tools :
4840 testing_rosettafold2 :
4941 cores : 8
7668 scheduling :
7769 require :
7870 - alphafold
79- toolshed.g2.bx.psu.edu/repos/iuc/goenrichment/goenrichment/2.0.1/.* :
80- scheduling :
81- require :
82- - nasty-java
Original file line number Diff line number Diff line change @@ -85,6 +85,10 @@ tools:
8585 inherits: local_running_tools
8686 .*/data_manager_.*:
8787 inherits: local_sing_running_tools
88+ toolshed.g2.bx.psu.edu/repos/iuc/goenrichment/goenrichment/2.0.1/.*:
89+ scheduling:
90+ require:
91+ - nasty-java
8892roles:
8993 training.*:
9094 max_cores: 4
@@ -171,3 +175,11 @@ destinations:
171175 scheduling:
172176 require:
173177 - training
178+ tpv_pulsar_nasty_java:
179+ inherits: tpv_pulsar
180+ runner: pulsar_tpv_runner
181+ params:
182+ singularity_run_extra_arguments: '--env _JAVA_OPTIONS="-Xmx{int(mem)}g -Djava.io.tmpdir=$SCRATCHDIR"'
183+ scheduling:
184+ require:
185+ - nasty-java
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