Ready for public use? #1
Description
Hello,
I have a bacterial genome.
Custom reference and annotations.
From looking at your repository I'm assuming this is note ready for public use.
For example, I see your slurm outputs for old jobs.
Is this true?
Also, I'm getting this error:
Command used:
python3 4_data_process/integrate.py txi272942 0_data gene_annotation.bed base_cov NA 0_data/data_integrated.pkl
Traceback (most recent call last): File "/lustre06/project/6007512/gerardoz/OpDetect/4_data_process/integrate.py", line 207, in <module> data = pd.concat(trains, axis=0).reset_index(drop=True) File "/home/gerardoz/OdPvenv/lib/python3.10/site-packages/pandas/core/reshape/concat.py", line 380, in concat op = _Concatenator( File "/home/gerardoz/OdPvenv/lib/python3.10/site-packages/pandas/core/reshape/concat.py", line 443, in __init__ objs, keys = self._clean_keys_and_objs(objs, keys) File "/home/gerardoz/OdPvenv/lib/python3.10/site-packages/pandas/core/reshape/concat.py", line 505, in _clean_keys_and_objs raise ValueError("No objects to concatenate") ValueError: No objects to concatenate
I installed all the prerequisites, with both python 3.10 and 3.12.
Same error.
Watch out --> im running within the parent directory "OpDetect" and using the dummy dataset
Separately, I'm confused about:
[Optional] Labels file listing genes in the same operon on the same line.
Is this not the point of the tool?
Where you get this if you have not run the tool?
Thank you!